Wall clock time and date at job start Mon Mar 30 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47066 * 2 1 4 4 H 1.09001 * 109.47022 * 179.24272 * 3 2 1 5 5 C 1.50705 * 109.46936 * 59.24957 * 3 2 1 6 6 H 1.07995 * 120.00101 * 239.99389 * 5 3 2 7 7 C 1.37881 * 119.99920 * 59.99944 * 5 3 2 8 8 N 1.31511 * 120.00128 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47038 * 60.00170 * 9 7 5 11 11 H 1.48500 * 109.46958 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47397 * 300.00162 * 9 7 5 13 13 N 1.46894 * 109.47485 * 299.24943 * 3 2 1 14 14 C 1.48674 * 111.10671 * 307.46026 * 13 3 2 15 15 C 1.54385 * 104.67172 * 201.09484 * 14 13 3 16 16 C 1.54259 * 105.05819 * 23.77245 * 15 14 13 17 17 C 1.48560 * 111.00407 * 192.04145 * 13 3 2 18 18 H 1.09001 * 110.40618 * 40.14365 * 17 13 3 19 19 C 1.50701 * 110.41145 * 277.82231 * 17 13 3 20 20 C 1.38247 * 119.97272 * 321.36467 * 19 17 13 21 21 C 1.38194 * 120.02463 * 179.77040 * 20 19 17 22 22 C 1.38460 * 119.97578 * 0.51131 * 21 20 19 23 23 F 1.35095 * 120.02698 * 179.76775 * 22 21 20 24 24 C 1.38455 * 119.94510 * 359.74545 * 22 21 20 25 25 C 1.38202 * 119.97863 * 0.02562 * 24 22 21 26 26 H 1.08992 * 109.47243 * 304.11394 * 1 2 3 27 27 H 1.09004 * 109.46782 * 64.11648 * 1 2 3 28 28 H 1.09003 * 109.47165 * 184.10767 * 1 2 3 29 29 H 1.08999 * 109.47458 * 239.99853 * 2 1 3 30 30 H 1.09000 * 109.46640 * 119.99990 * 2 1 3 31 31 H 0.96998 * 119.99882 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.44266 * 82.25959 * 14 13 3 33 33 H 1.08999 * 110.40601 * 319.91645 * 14 13 3 34 34 H 1.08997 * 110.32323 * 264.87792 * 15 14 13 35 35 H 1.08996 * 110.32045 * 142.67112 * 15 14 13 36 36 H 1.08998 * 110.31997 * 241.10015 * 16 15 14 37 37 H 1.08997 * 110.32312 * 118.89636 * 16 15 14 38 38 H 1.08011 * 119.98471 * 0.02945 * 20 19 17 39 39 H 1.08000 * 120.01265 * 180.26014 * 21 20 19 40 40 H 1.08002 * 120.01238 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.99086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5225 2.1582 1.2211 6 1 0.9030 3.0359 1.1106 7 6 1.8401 1.6926 2.4795 8 7 2.5942 0.6236 2.6141 9 14 1.1992 2.5802 3.9930 10 1 -0.2857 2.5807 3.9748 11 1 1.6796 1.8857 5.2145 12 1 1.6947 3.9801 3.9928 13 7 1.5653 2.1298 -1.2083 14 6 1.9032 1.3560 -2.4321 15 6 1.8557 2.3923 -3.5755 16 6 2.0942 3.7545 -2.8920 17 6 2.2657 3.4267 -1.3932 18 1 3.3223 3.3269 -1.1443 19 6 1.6258 4.4953 -0.5448 20 6 0.2515 4.5300 -0.3984 21 6 -0.3361 5.5066 0.3832 22 6 0.4512 6.4568 1.0111 23 9 -0.1225 7.4147 1.7716 24 6 1.8270 6.4242 0.8594 25 6 2.4129 5.4438 0.0812 26 1 -0.3633 0.5763 0.8508 27 1 -0.3633 0.4486 -0.9246 28 1 -0.3633 -1.0250 0.0736 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8179 0.2963 3.4994 32 1 1.1673 0.5698 -2.6008 33 1 2.9024 0.9286 -2.3476 34 1 0.8792 2.3774 -4.0595 35 1 2.6425 2.1904 -4.3022 36 1 1.2348 4.4082 -3.0406 37 1 2.9981 4.2213 -3.2833 38 1 -0.3627 3.7911 -0.8916 39 1 -1.4094 5.5310 0.5008 40 1 2.4422 7.1651 1.3484 41 1 3.4861 5.4179 -0.0370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:10 Heat of formation + Delta-G solvation = -31.278264 kcal Electronic energy + Delta-G solvation = -22767.365581 eV Core-core repulsion = 19560.763702 eV Total energy + Delta-G solvation = -3206.601879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.80429 -40.83475 -38.88601 -36.13753 -33.46215 -32.37881 -31.93109 -30.94440 -28.36229 -27.79719 -25.17418 -24.01638 -23.44565 -22.39121 -20.98872 -20.42127 -18.55865 -18.14892 -17.24086 -17.17744 -16.78591 -16.47096 -15.92101 -15.48106 -15.17657 -14.96138 -14.45872 -14.41043 -14.23986 -13.96035 -13.77254 -13.56298 -13.28469 -13.12447 -12.83872 -12.65362 -12.49684 -12.25095 -12.02205 -11.90405 -11.72462 -11.61661 -11.49832 -11.27814 -11.18432 -10.76323 -10.41527 -9.82906 -9.20842 -9.00724 -8.02282 -6.05608 0.35572 0.48355 1.37527 1.39543 1.45194 2.44342 2.78045 3.27478 3.42714 3.45372 3.89077 3.95696 3.97184 4.09218 4.28330 4.35235 4.46593 4.56687 4.66104 4.67924 4.74699 4.85598 4.90678 4.95712 5.08688 5.10713 5.13392 5.25331 5.26390 5.30610 5.32952 5.38642 5.45704 5.50028 5.55860 5.77785 5.84772 5.85985 5.92575 6.11908 6.37940 6.45863 6.73033 7.07846 7.60581 9.03916 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.010315 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.277465 B = 2713.790035 C = 4337.920934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.217 3.783 4 H -0.042 1.042 5 C -0.482 4.482 6 H 0.076 0.924 7 C 0.019 3.981 8 N -0.922 5.922 9 Si 0.923 3.077 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.495 5.495 14 C 0.028 3.972 15 C -0.112 4.112 16 C -0.108 4.108 17 C 0.105 3.895 18 H 0.034 0.966 19 C -0.048 4.048 20 C -0.057 4.057 21 C -0.166 4.166 22 C 0.061 3.939 23 F -0.153 7.153 24 C -0.160 4.160 25 C -0.099 4.099 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 7.070 -10.796 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.110 3.890 4 H -0.025 1.025 5 C -0.521 4.521 6 H 0.094 0.906 7 C -0.178 4.178 8 N -0.564 5.564 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.219 5.219 14 C -0.100 4.100 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.004 4.004 18 H 0.052 0.948 19 C -0.048 4.048 20 C -0.075 4.075 21 C -0.184 4.184 22 C 0.042 3.958 23 F -0.132 7.132 24 C -0.179 4.179 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.603 7.045 -10.547 12.948 hybrid contribution 0.826 0.085 1.753 1.940 sum -1.777 7.130 -8.794 11.460 Atomic orbital electron populations 1.21337 0.95714 0.98420 1.01067 1.21456 0.96456 0.97642 0.99190 1.19187 0.90410 0.91597 0.87808 1.02480 1.21555 1.29278 1.11535 0.89738 0.90572 1.25383 0.96037 0.95645 1.00748 1.69990 1.39190 1.24399 1.22774 0.86142 0.79053 0.78977 0.80758 1.20012 1.21691 1.20491 1.65355 1.52532 1.02174 1.01845 1.23115 0.98531 0.97390 0.91012 1.22273 1.03023 0.93147 0.96565 1.22346 1.02732 0.98019 0.91498 1.21419 0.94526 0.89581 0.94897 0.94766 1.19711 0.93779 0.94447 0.96884 1.20830 0.94737 0.95549 0.96370 1.21286 1.01012 0.95932 1.00204 1.17874 0.92174 0.89684 0.96023 1.91420 1.85317 1.62315 1.74168 1.21168 0.92863 1.01745 1.02092 1.20990 1.00461 0.94057 0.96232 0.94544 0.92613 0.94967 0.95326 0.92405 0.93652 0.90368 0.95994 0.90002 0.90039 0.90483 0.90079 0.84413 0.83952 0.83792 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.52 71.98 0.69 -3.79 16 2 C -0.11 -4.99 5.03 30.59 0.15 -4.84 16 3 C 0.22 10.24 1.61 44.17 0.07 10.31 16 4 H -0.04 -2.31 7.83 -2.39 -0.02 -2.33 16 5 C -0.48 -24.71 6.44 25.60 0.16 -24.55 16 6 H 0.08 3.83 4.36 -2.91 -0.01 3.82 16 7 C 0.02 1.06 5.30 84.66 0.45 1.50 16 8 N -0.92 -52.65 11.33 21.45 0.24 -52.40 16 9 Si 0.92 44.68 29.54 68.60 2.03 46.70 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 13 N -0.49 -18.59 3.55 -840.05 -2.98 -21.57 16 14 C 0.03 0.86 4.95 86.43 0.43 1.29 16 15 C -0.11 -2.62 7.00 31.49 0.22 -2.40 16 16 C -0.11 -2.70 6.53 31.49 0.21 -2.49 16 17 C 0.10 3.54 2.42 44.32 0.11 3.65 16 18 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 19 C -0.05 -1.64 3.14 -19.86 -0.06 -1.70 16 20 C -0.06 -1.93 7.19 22.26 0.16 -1.77 16 21 C -0.17 -5.47 10.03 22.31 0.22 -5.25 16 22 C 0.06 2.09 7.30 22.37 0.16 2.26 16 23 F -0.15 -5.18 17.27 44.97 0.78 -4.41 16 24 C -0.16 -5.17 10.03 22.31 0.22 -4.95 16 25 C -0.10 -3.27 9.68 22.26 0.22 -3.05 16 26 H 0.04 1.67 7.05 -2.39 -0.02 1.65 16 27 H 0.05 2.09 7.19 -2.38 -0.02 2.07 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 30 H 0.06 3.07 6.09 -2.39 -0.01 3.05 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.08 2.39 7.21 -2.39 -0.02 2.37 16 33 H 0.02 0.74 7.95 -2.39 -0.02 0.72 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.83 7.75 -2.39 -0.02 1.81 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.14 4.64 7.71 -2.91 -0.02 4.62 16 39 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.14 4.01 8.05 -2.91 -0.02 3.98 16 Total: -1.00 -58.73 321.78 4.48 -54.25 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.01 Total: 13.19 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 3.41 Total: -35.76 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -2.74 Total: -73.97 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -58.73 4.48 -54.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.968 kcal (2) G-P(sol) polarization free energy of solvation -58.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds