Wall clock time and date at job start Mon Mar 30 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 H 1.09003 * 109.46949 * 54.99687 * 3 2 1 5 5 C 1.50694 * 109.47174 * 175.00217 * 3 2 1 6 6 H 1.08000 * 120.00563 * 119.99919 * 5 3 2 7 7 C 1.37885 * 119.99902 * 300.00082 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46903 * 109.47120 * 295.00178 * 3 2 1 14 14 C 1.48560 * 110.99910 * 290.42253 * 13 3 2 15 15 C 1.54377 * 104.59229 * 200.96150 * 14 13 3 16 16 C 1.54264 * 105.06432 * 23.84817 * 15 14 13 17 17 C 1.48558 * 111.00011 * 174.99978 * 13 3 2 18 18 H 1.09002 * 110.41126 * 40.26126 * 17 13 3 19 19 C 1.50699 * 110.41055 * 277.93810 * 17 13 3 20 20 C 1.38250 * 119.97442 * 319.72192 * 19 17 13 21 21 C 1.38202 * 120.02306 * 179.77072 * 20 19 17 22 22 C 1.38454 * 119.97403 * 0.50661 * 21 20 19 23 23 F 1.35104 * 120.02714 * 179.76999 * 22 21 20 24 24 C 1.38458 * 119.95030 * 359.74596 * 22 21 20 25 25 C 1.38195 * 119.97490 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47792 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46826 * 300.00212 * 1 2 3 28 28 H 1.09001 * 109.47268 * 59.99832 * 1 2 3 29 29 H 1.08995 * 109.46533 * 239.99866 * 2 1 3 30 30 H 1.09002 * 109.46745 * 120.00186 * 2 1 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.40747 * 319.73334 * 14 13 3 33 33 H 1.08998 * 110.41551 * 82.17742 * 14 13 3 34 34 H 1.09000 * 110.32721 * 264.95249 * 15 14 13 35 35 H 1.09003 * 110.41317 * 142.78976 * 15 14 13 36 36 H 1.08994 * 110.32365 * 241.10961 * 16 15 14 37 37 H 1.08999 * 110.32318 * 118.89228 * 16 15 14 38 38 H 1.07993 * 119.98404 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.00867 * 180.25800 * 21 20 19 40 40 H 1.07997 * 120.01244 * 179.97438 * 24 22 21 41 41 H 1.08007 * 119.98771 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3810 10 1 6.5538 -0.3523 0.7597 11 1 6.5576 2.0717 0.6887 12 1 6.3835 0.9212 2.8164 13 7 1.6514 2.0993 -1.2552 14 6 2.4047 1.5372 -2.4057 15 6 2.3184 2.6261 -3.4965 16 6 2.0685 3.9418 -2.7308 17 6 2.0250 3.5371 -1.2417 18 1 3.0045 3.6710 -0.7825 19 6 0.9861 4.3431 -0.5055 20 6 -0.3562 4.0576 -0.6733 21 6 -1.3096 4.7931 0.0050 22 6 -0.9205 5.8230 0.8446 23 9 -1.8519 6.5457 1.5046 24 6 0.4238 6.1114 1.0078 25 6 1.3757 5.3715 0.3322 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0612 2.9499 32 1 3.4436 1.3582 -2.1287 33 1 1.9382 0.6147 -2.7514 34 1 1.4896 2.4189 -4.1736 35 1 3.2547 2.6832 -4.0517 36 1 1.1172 4.3802 -3.0319 37 1 2.8831 4.6438 -2.9086 38 1 -0.6595 3.2569 -1.3314 39 1 -2.3579 4.5672 -0.1230 40 1 0.7284 6.9148 1.6621 41 1 2.4244 5.5961 0.4597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:14 Heat of formation + Delta-G solvation = -23.810308 kcal Electronic energy + Delta-G solvation = -22353.779365 eV Core-core repulsion = 19147.501320 eV Total energy + Delta-G solvation = -3206.278045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.61254 -39.41960 -37.60251 -34.24061 -31.68061 -31.07552 -30.75464 -29.64247 -26.91137 -26.11964 -23.25436 -22.71888 -22.10038 -20.92916 -19.61550 -18.93956 -17.36545 -16.49193 -16.05741 -15.46651 -15.31381 -15.21311 -14.34748 -14.14375 -13.55384 -13.22234 -13.16087 -12.96660 -12.93408 -12.51602 -12.33458 -12.14577 -11.85722 -11.40675 -11.06832 -10.95496 -10.80915 -10.77060 -10.60615 -10.55749 -10.37178 -10.04577 -9.93410 -9.66582 -9.49194 -9.13331 -8.73238 -8.39001 -8.10830 -7.29947 -6.02923 -4.15629 1.51895 1.61801 3.23140 3.31265 3.32504 3.96029 4.35591 4.58292 4.89218 5.11925 5.16562 5.20455 5.26948 5.35248 5.57573 5.63017 5.74159 5.78206 6.06305 6.12387 6.25112 6.30396 6.32746 6.34291 6.44286 6.45447 6.50302 6.59442 6.64887 6.68488 6.73485 6.86924 7.01374 7.08361 7.16581 7.26210 7.31935 7.56349 7.71408 7.92601 8.10575 8.17426 8.40235 8.94153 9.51275 10.97078 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.006356 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.660764 B = 4404.503340 C = 4767.759921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.206 3.794 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.500 5.500 14 C 0.033 3.967 15 C -0.124 4.124 16 C -0.114 4.114 17 C 0.099 3.901 18 H 0.074 0.926 19 C -0.057 4.057 20 C -0.061 4.061 21 C -0.161 4.161 22 C 0.080 3.920 23 F -0.150 7.150 24 C -0.158 4.158 25 C -0.087 4.087 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 7.226 -6.761 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.099 3.901 4 H 0.057 0.943 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.224 5.224 14 C -0.095 4.095 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.010 4.010 18 H 0.092 0.908 19 C -0.057 4.057 20 C -0.079 4.079 21 C -0.180 4.180 22 C 0.061 3.939 23 F -0.129 7.129 24 C -0.177 4.177 25 C -0.105 4.105 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.594 7.061 -6.592 11.163 hybrid contribution 1.806 0.101 0.615 1.910 sum -3.788 7.163 -5.977 10.068 Atomic orbital electron populations 1.21709 0.98919 0.98387 1.00489 1.21536 0.92181 0.99089 1.01853 1.19359 0.93116 0.91303 0.86345 0.94288 1.21698 0.92784 1.38485 1.05496 0.92237 1.24899 0.97683 0.95035 0.95657 1.69879 1.34763 1.37980 1.09356 0.86717 0.86323 0.78392 0.77296 1.20686 1.20050 1.21218 1.65645 1.51417 0.99944 1.05401 1.23025 0.99310 0.96473 0.90717 1.22315 1.00513 0.95432 0.97999 1.22318 1.01059 0.97267 0.94528 1.21451 0.95679 0.90394 0.93494 0.90825 1.19900 0.94606 0.94896 0.96344 1.20929 0.91735 0.97456 0.97803 1.21116 1.00762 0.96766 0.99315 1.17694 0.86094 0.93808 0.96311 1.91446 1.65223 1.76736 1.79470 1.20991 0.91233 1.02551 1.02907 1.20935 0.99354 0.94859 0.95384 0.95659 0.94295 0.93423 0.95089 0.89074 0.92874 0.91643 0.91624 0.92166 0.92443 0.91804 0.92207 0.84378 0.85449 0.85448 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.39 16 2 C -0.11 -2.49 5.24 -26.73 -0.14 -2.63 16 3 C 0.21 4.80 1.70 -68.87 -0.12 4.68 16 4 H 0.04 1.05 7.86 -51.93 -0.41 0.64 16 5 C -0.55 -13.80 6.56 -34.44 -0.23 -14.03 16 6 H 0.06 1.50 5.65 -52.49 -0.30 1.20 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.23 11.30 55.43 0.63 -23.61 16 9 Si 0.88 20.49 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.50 -9.71 3.81 -216.97 -0.83 -10.54 16 14 C 0.03 0.60 5.47 -2.18 -0.01 0.58 16 15 C -0.12 -1.83 7.00 -25.35 -0.18 -2.01 16 16 C -0.11 -1.68 6.52 -25.35 -0.17 -1.84 16 17 C 0.10 1.76 2.28 -67.22 -0.15 1.60 16 18 H 0.07 1.48 6.51 -51.93 -0.34 1.15 16 19 C -0.06 -0.96 4.58 -104.62 -0.48 -1.44 16 20 C -0.06 -0.97 9.15 -39.59 -0.36 -1.34 16 21 C -0.16 -2.41 10.03 -39.52 -0.40 -2.81 16 22 C 0.08 1.24 7.30 -39.42 -0.29 0.95 16 23 F -0.15 -2.31 17.27 2.25 0.04 -2.27 16 24 C -0.16 -2.37 10.03 -39.52 -0.40 -2.77 16 25 C -0.09 -1.38 9.68 -39.59 -0.38 -1.76 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.05 0.90 7.75 -51.93 -0.40 0.49 16 29 H 0.03 0.70 7.04 -51.93 -0.37 0.33 16 30 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.07 1.33 5.53 -51.93 -0.29 1.05 16 33 H 0.07 1.17 7.63 -51.93 -0.40 0.78 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.14 2.17 7.76 -52.49 -0.41 1.77 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 1.88 8.04 -52.48 -0.42 1.46 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -26.40 326.43 -9.42 -35.81 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.13 Total: 3.66 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.03 Total: -23.44 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.20 Total: -34.15 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.40 -9.42 -35.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.003 kcal (2) G-P(sol) polarization free energy of solvation -26.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds