Wall clock time and date at job start Mon Mar 30 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 H 1.09003 * 109.46949 * 54.99687 * 3 2 1 5 5 C 1.50694 * 109.47174 * 175.00217 * 3 2 1 6 6 H 1.08000 * 120.00563 * 119.99919 * 5 3 2 7 7 C 1.37885 * 119.99902 * 300.00082 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46903 * 109.47120 * 295.00178 * 3 2 1 14 14 C 1.48560 * 110.99910 * 290.42253 * 13 3 2 15 15 C 1.54377 * 104.59229 * 200.96150 * 14 13 3 16 16 C 1.54264 * 105.06432 * 23.84817 * 15 14 13 17 17 C 1.48558 * 111.00011 * 174.99978 * 13 3 2 18 18 H 1.09002 * 110.41126 * 40.26126 * 17 13 3 19 19 C 1.50699 * 110.41055 * 277.93810 * 17 13 3 20 20 C 1.38250 * 119.97442 * 319.72192 * 19 17 13 21 21 C 1.38202 * 120.02306 * 179.77072 * 20 19 17 22 22 C 1.38454 * 119.97403 * 0.50661 * 21 20 19 23 23 F 1.35104 * 120.02714 * 179.76999 * 22 21 20 24 24 C 1.38458 * 119.95030 * 359.74596 * 22 21 20 25 25 C 1.38195 * 119.97490 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47792 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46826 * 300.00212 * 1 2 3 28 28 H 1.09001 * 109.47268 * 59.99832 * 1 2 3 29 29 H 1.08995 * 109.46533 * 239.99866 * 2 1 3 30 30 H 1.09002 * 109.46745 * 120.00186 * 2 1 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.40747 * 319.73334 * 14 13 3 33 33 H 1.08998 * 110.41551 * 82.17742 * 14 13 3 34 34 H 1.09000 * 110.32721 * 264.95249 * 15 14 13 35 35 H 1.09003 * 110.41317 * 142.78976 * 15 14 13 36 36 H 1.08994 * 110.32365 * 241.10961 * 16 15 14 37 37 H 1.08999 * 110.32318 * 118.89228 * 16 15 14 38 38 H 1.07993 * 119.98404 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.00867 * 180.25800 * 21 20 19 40 40 H 1.07997 * 120.01244 * 179.97438 * 24 22 21 41 41 H 1.08007 * 119.98771 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3810 10 1 6.5538 -0.3523 0.7597 11 1 6.5576 2.0717 0.6887 12 1 6.3835 0.9212 2.8164 13 7 1.6514 2.0993 -1.2552 14 6 2.4047 1.5372 -2.4057 15 6 2.3184 2.6261 -3.4965 16 6 2.0685 3.9418 -2.7308 17 6 2.0250 3.5371 -1.2417 18 1 3.0045 3.6710 -0.7825 19 6 0.9861 4.3431 -0.5055 20 6 -0.3562 4.0576 -0.6733 21 6 -1.3096 4.7931 0.0050 22 6 -0.9205 5.8230 0.8446 23 9 -1.8519 6.5457 1.5046 24 6 0.4238 6.1114 1.0078 25 6 1.3757 5.3715 0.3322 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0612 2.9499 32 1 3.4436 1.3582 -2.1287 33 1 1.9382 0.6147 -2.7514 34 1 1.4896 2.4189 -4.1736 35 1 3.2547 2.6832 -4.0517 36 1 1.1172 4.3802 -3.0319 37 1 2.8831 4.6438 -2.9086 38 1 -0.6595 3.2569 -1.3314 39 1 -2.3579 4.5672 -0.1230 40 1 0.7284 6.9148 1.6621 41 1 2.4244 5.5961 0.4597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:14 Heat of formation + Delta-G solvation = -35.704070 kcal Electronic energy + Delta-G solvation = -22354.295117 eV Core-core repulsion = 19147.501320 eV Total energy + Delta-G solvation = -3206.793797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.82448 -40.78965 -38.98490 -35.96089 -33.58826 -32.35454 -31.96600 -31.20017 -28.23274 -27.97026 -24.98879 -23.99558 -23.43542 -22.40854 -20.94276 -20.68535 -18.62577 -18.25603 -17.42826 -17.04647 -16.65613 -16.51169 -16.02441 -15.46106 -15.02259 -14.80986 -14.51250 -14.46597 -14.29442 -13.91054 -13.83173 -13.51263 -13.45633 -13.12397 -12.78325 -12.57211 -12.40087 -12.27032 -12.03625 -11.90336 -11.78674 -11.68859 -11.57234 -11.33765 -11.13917 -10.96943 -10.40168 -9.93932 -9.36790 -8.99308 -8.01817 -6.22002 0.27385 0.40596 1.36947 1.39762 1.46954 2.40876 2.71818 3.18350 3.37148 3.48836 3.89513 3.95141 4.01129 4.07328 4.30459 4.39037 4.51701 4.51986 4.61654 4.74368 4.76592 4.89051 4.94132 5.04588 5.10163 5.10448 5.15878 5.20437 5.24499 5.30260 5.35412 5.41338 5.44898 5.48186 5.56862 5.65854 5.75014 5.84840 6.04570 6.10375 6.21076 6.41042 6.56293 7.00577 7.47952 8.94392 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.006356 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.660764 B = 4404.503340 C = 4767.759921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.270 1.270 12 H -0.288 1.288 13 N -0.495 5.495 14 C 0.030 3.970 15 C -0.114 4.114 16 C -0.106 4.106 17 C 0.098 3.902 18 H 0.044 0.956 19 C -0.073 4.073 20 C -0.066 4.066 21 C -0.158 4.158 22 C 0.071 3.929 23 F -0.149 7.149 24 C -0.157 4.157 25 C -0.099 4.099 26 H 0.042 0.958 27 H 0.027 0.973 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 8.064 -8.286 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.214 1.214 13 N -0.218 5.218 14 C -0.099 4.099 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.011 4.011 18 H 0.062 0.938 19 C -0.074 4.074 20 C -0.085 4.085 21 C -0.176 4.176 22 C 0.052 3.948 23 F -0.128 7.128 24 C -0.175 4.175 25 C -0.117 4.117 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.056 7.910 -8.137 12.862 hybrid contribution 1.929 -0.133 1.094 2.222 sum -4.127 7.777 -7.042 11.274 Atomic orbital electron populations 1.21561 0.96427 0.99621 1.00579 1.21392 0.94385 0.98431 1.00104 1.19017 0.91702 0.91268 0.86977 0.98278 1.21993 0.94093 1.37383 1.05084 0.92412 1.25584 1.01379 0.95174 0.95673 1.70018 1.36116 1.39106 1.09817 0.85819 0.81971 0.78459 0.76965 1.20379 1.19461 1.21421 1.65574 1.51278 1.00891 1.04024 1.23047 0.97432 0.98014 0.91367 1.22275 1.02270 0.93622 0.97031 1.22303 1.02453 0.97686 0.91974 1.21446 0.94501 0.89454 0.95722 0.93822 1.19958 0.94933 0.95393 0.97067 1.20955 0.91467 0.97766 0.98268 1.21334 1.01764 0.96070 0.98451 1.17850 0.86324 0.94099 0.96559 1.91448 1.65168 1.76724 1.79468 1.21209 0.90991 1.02703 1.02617 1.21067 0.99972 0.95095 0.95595 0.93850 0.95362 0.92018 0.95141 0.92363 0.93178 0.94286 0.91426 0.90132 0.90852 0.90378 0.90802 0.84105 0.83244 0.83419 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.80 71.98 0.71 -4.19 16 2 C -0.10 -4.88 5.24 30.59 0.16 -4.72 16 3 C 0.22 10.40 1.70 44.17 0.08 10.48 16 4 H 0.00 -0.04 7.86 -2.39 -0.02 -0.06 16 5 C -0.55 -28.26 6.56 25.60 0.17 -28.09 16 6 H 0.06 2.96 5.65 -2.91 -0.02 2.94 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -51.58 11.30 21.45 0.24 -51.34 16 9 Si 0.94 42.67 29.54 68.60 2.03 44.70 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.49 -19.05 3.81 -840.38 -3.20 -22.26 16 14 C 0.03 1.04 5.47 86.45 0.47 1.52 16 15 C -0.11 -3.04 7.00 31.49 0.22 -2.82 16 16 C -0.11 -2.90 6.52 31.49 0.21 -2.69 16 17 C 0.10 3.43 2.28 44.32 0.10 3.53 16 18 H 0.04 1.79 6.51 -2.39 -0.02 1.78 16 19 C -0.07 -2.42 4.58 -19.86 -0.09 -2.51 16 20 C -0.07 -2.04 9.15 22.26 0.20 -1.83 16 21 C -0.16 -4.46 10.03 22.31 0.22 -4.24 16 22 C 0.07 2.09 7.30 22.37 0.16 2.25 16 23 F -0.15 -4.35 17.27 44.97 0.78 -3.57 16 24 C -0.16 -4.51 10.03 22.31 0.22 -4.29 16 25 C -0.10 -3.10 9.68 22.26 0.22 -2.88 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 29 H 0.03 1.38 7.04 -2.39 -0.02 1.36 16 30 H 0.06 3.12 5.95 -2.39 -0.01 3.11 16 31 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.04 1.59 5.53 -2.39 -0.01 1.57 16 33 H 0.07 2.33 7.63 -2.39 -0.02 2.32 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.94 7.71 -2.39 -0.02 1.92 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.14 4.20 7.76 -2.91 -0.02 4.17 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.13 3.91 8.04 -2.91 -0.02 3.89 16 Total: -1.00 -57.38 326.43 4.35 -53.03 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.01 Total: 18.32 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 3.50 Total: -38.88 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -2.96 Total: -73.60 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.57 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -57.38 4.35 -53.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -57.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds