Wall clock time and date at job start Mon Mar 30 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 H 1.08999 * 109.47143 * 303.38727 * 3 2 1 5 5 C 1.50704 * 109.47014 * 183.39336 * 3 2 1 6 6 H 1.08007 * 119.99514 * 245.40410 * 5 3 2 7 7 C 1.37872 * 120.00166 * 65.40376 * 5 3 2 8 8 N 1.31515 * 119.99880 * 9.69474 * 7 5 3 9 9 Si 1.86802 * 120.00129 * 189.69984 * 7 5 3 10 10 H 1.48489 * 109.47412 * 84.98983 * 9 7 5 11 11 H 1.48498 * 109.47029 * 204.99796 * 9 7 5 12 12 H 1.48504 * 109.46579 * 324.98865 * 9 7 5 13 13 N 1.46895 * 109.46956 * 63.39215 * 3 2 1 14 14 C 1.47439 * 111.00388 * 69.15835 * 13 3 2 15 15 C 1.54320 * 107.23638 * 123.25474 * 14 13 3 16 16 C 1.55260 * 103.08418 * 22.20655 * 15 14 13 17 17 C 1.47849 * 110.99970 * 190.00020 * 13 3 2 18 18 H 1.09004 * 110.37308 * 332.57460 * 17 13 3 19 19 C 1.50697 * 110.37617 * 94.80230 * 17 13 3 20 20 C 1.38241 * 119.97877 * 218.44834 * 19 17 13 21 21 C 1.38193 * 120.02624 * 180.02562 * 20 19 17 22 22 C 1.38458 * 119.97617 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02557 * 179.97438 * 22 21 20 24 24 C 1.38456 * 119.94808 * 0.02562 * 22 21 20 25 25 C 1.38199 * 119.97546 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47481 * 59.99914 * 1 2 3 27 27 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47129 * 300.00293 * 1 2 3 29 29 H 1.08997 * 109.46777 * 240.00029 * 2 1 3 30 30 H 1.09002 * 109.46744 * 120.00044 * 2 1 3 31 31 H 0.97002 * 119.99866 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.89213 * 242.66499 * 14 13 3 33 33 H 1.08999 * 109.88785 * 3.68904 * 14 13 3 34 34 H 1.09000 * 110.70756 * 140.66813 * 15 14 13 35 35 H 1.08999 * 110.70590 * 263.72850 * 15 14 13 36 36 H 1.09005 * 111.08344 * 206.38839 * 16 15 14 37 37 H 1.08998 * 110.94416 * 82.53079 * 16 15 14 38 38 H 1.07998 * 119.98564 * 0.27629 * 20 19 17 39 39 H 1.08008 * 120.01318 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.01547 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98935 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6279 1.9735 -0.8581 5 6 3.5447 1.4432 -0.0841 6 1 4.1315 1.8160 0.7425 7 6 4.1721 0.9681 -1.2161 8 7 3.4676 0.6935 -2.2922 9 14 6.0228 0.7145 -1.2215 10 1 6.3410 -0.6216 -0.6569 11 1 6.5297 0.7967 -2.6149 12 1 6.6690 1.7670 -0.3969 13 7 1.6184 2.1108 1.2383 14 6 2.3282 1.5570 2.4058 15 6 3.0443 2.7316 3.1051 16 6 2.2406 3.9698 2.6240 17 6 1.8828 3.5640 1.1725 18 1 2.7197 3.7676 0.5044 19 6 0.6523 4.3008 0.7099 20 6 0.7740 5.3790 -0.1467 21 6 -0.3537 6.0557 -0.5711 22 6 -1.6058 5.6531 -0.1385 23 9 -2.7089 6.3143 -0.5524 24 6 -1.7265 4.5731 0.7193 25 6 -0.5974 3.8978 1.1425 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9090 0.3589 -3.0885 32 1 1.6148 1.0975 3.0899 33 1 3.0581 0.8163 2.0790 34 1 2.9841 2.6295 4.1887 35 1 4.0835 2.7964 2.7827 36 1 2.8584 4.8677 2.6374 37 1 1.3410 4.1075 3.2239 38 1 1.7504 5.6901 -0.4875 39 1 -0.2583 6.8984 -1.2400 40 1 -2.7027 4.2584 1.0577 41 1 -0.6913 3.0551 1.8113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:18 Heat of formation + Delta-G solvation = -27.365331 kcal Electronic energy + Delta-G solvation = -22300.100079 eV Core-core repulsion = 19093.667878 eV Total energy + Delta-G solvation = -3206.432202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.63197 -39.42136 -37.67507 -34.15013 -31.74927 -31.08061 -30.77180 -29.52244 -26.97261 -26.21774 -23.09568 -22.74370 -22.12466 -21.01389 -19.78224 -18.76591 -17.38243 -16.59230 -16.11361 -15.49217 -15.32590 -15.12018 -14.39915 -14.12719 -13.50923 -13.24444 -13.11667 -13.01617 -12.93835 -12.56101 -12.39717 -11.95186 -11.87963 -11.46487 -11.21331 -10.94117 -10.81327 -10.70448 -10.64658 -10.47056 -10.38918 -10.07966 -10.01601 -9.66671 -9.58509 -9.13684 -8.75315 -8.38377 -8.12082 -7.23879 -6.05631 -4.13342 1.50091 1.59976 3.24169 3.31872 3.33286 3.94096 4.36871 4.56422 4.87836 5.10468 5.14893 5.21692 5.22407 5.33697 5.58962 5.64046 5.73212 5.78146 6.05211 6.11600 6.23180 6.28274 6.30317 6.34388 6.40601 6.42617 6.47553 6.58432 6.60801 6.72539 6.75656 6.84045 7.03856 7.06859 7.13220 7.24765 7.30686 7.57094 7.66990 7.88559 8.09787 8.22422 8.40845 8.96852 9.52482 10.97559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.005771 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.055027 B = 4850.523843 C = 5022.080944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 C 0.209 3.791 4 H 0.044 0.956 5 C -0.547 4.547 6 H 0.059 0.941 7 C 0.072 3.928 8 N -0.881 5.881 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.519 5.519 14 C 0.047 3.953 15 C -0.138 4.138 16 C -0.117 4.117 17 C 0.111 3.889 18 H 0.077 0.923 19 C -0.058 4.058 20 C -0.089 4.089 21 C -0.158 4.158 22 C 0.079 3.921 23 F -0.150 7.150 24 C -0.161 4.161 25 C -0.059 4.059 26 H 0.039 0.961 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.572 6.575 7.287 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 C 0.102 3.898 4 H 0.062 0.938 5 C -0.586 4.586 6 H 0.077 0.923 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.709 3.291 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.081 4.081 15 C -0.176 4.176 16 C -0.155 4.155 17 C 0.002 3.998 18 H 0.095 0.905 19 C -0.059 4.059 20 C -0.107 4.107 21 C -0.177 4.177 22 C 0.060 3.940 23 F -0.129 7.129 24 C -0.180 4.180 25 C -0.078 4.078 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.135 6.420 7.113 11.378 hybrid contribution 1.771 -0.014 -0.481 1.835 sum -4.364 6.406 6.632 10.201 Atomic orbital electron populations 1.21699 0.98564 0.98439 1.00814 1.21470 0.92577 0.99203 1.00689 1.19420 0.92904 0.90810 0.86624 0.93801 1.21735 0.92459 1.42754 1.01629 0.92276 1.24912 0.97611 0.95360 0.95270 1.69963 1.35625 1.44109 1.02128 0.86790 0.86430 0.78717 0.77149 1.20583 1.21359 1.20120 1.63712 1.54947 1.00646 1.04971 1.22670 0.96308 0.96832 0.92300 1.22783 0.99675 0.95747 0.99392 1.22712 0.99538 0.97564 0.95701 1.21337 0.93159 0.89630 0.95679 0.90465 1.20012 0.95552 0.94550 0.95795 1.20934 0.98127 0.95191 0.96474 1.20992 0.91225 1.02406 1.03063 1.17698 0.82567 0.94371 0.99348 1.91446 1.52230 1.80028 1.89185 1.21125 1.00231 0.96464 1.00199 1.20920 0.90589 0.97919 0.98332 0.94178 0.95643 0.93092 0.91100 0.94713 0.92877 0.92920 0.90750 0.92229 0.91695 0.91845 0.91494 0.85378 0.85457 0.85483 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.79 37.16 0.36 -2.34 16 2 C -0.10 -2.27 5.23 -26.73 -0.14 -2.41 16 3 C 0.21 4.84 1.51 -68.87 -0.10 4.73 16 4 H 0.04 1.18 8.02 -51.93 -0.42 0.76 16 5 C -0.55 -13.73 6.26 -34.44 -0.22 -13.95 16 6 H 0.06 1.47 6.11 -52.48 -0.32 1.15 16 7 C 0.07 1.89 5.17 -17.82 -0.09 1.80 16 8 N -0.88 -24.30 12.17 55.43 0.67 -23.63 16 9 Si 0.88 20.45 29.55 -169.99 -5.02 15.42 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.52 -9.97 3.40 -218.22 -0.74 -10.72 16 14 C 0.05 0.84 5.34 -2.84 -0.02 0.83 16 15 C -0.14 -2.13 6.74 -24.84 -0.17 -2.30 16 16 C -0.12 -1.75 6.49 -24.53 -0.16 -1.91 16 17 C 0.11 1.96 2.38 -67.34 -0.16 1.80 16 18 H 0.08 1.58 6.96 -51.93 -0.36 1.22 16 19 C -0.06 -0.96 5.02 -104.62 -0.53 -1.49 16 20 C -0.09 -1.37 9.68 -39.60 -0.38 -1.76 16 21 C -0.16 -2.30 10.03 -39.52 -0.40 -2.70 16 22 C 0.08 1.20 7.30 -39.42 -0.29 0.91 16 23 F -0.15 -2.26 17.27 2.25 0.04 -2.22 16 24 C -0.16 -2.35 10.03 -39.52 -0.40 -2.74 16 25 C -0.06 -0.92 9.23 -39.59 -0.37 -1.29 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 29 H 0.07 1.80 6.84 -51.93 -0.36 1.44 16 30 H 0.03 0.76 7.02 -51.93 -0.36 0.39 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.51 5.58 -51.93 -0.29 1.22 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.07 7.74 -51.93 -0.40 0.67 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 38 H 0.13 1.83 8.05 -52.49 -0.42 1.41 16 39 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.14 2.10 7.70 -52.49 -0.40 1.70 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -26.33 328.71 -9.39 -35.71 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.24 Total: 3.27 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -3.04 Total: -22.80 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.07 Total: -34.34 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.33 -9.39 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.349 kcal (2) G-P(sol) polarization free energy of solvation -26.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds