Wall clock time and date at job start Mon Mar 30 2020 02:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 H 1.08999 * 109.47143 * 303.38727 * 3 2 1 5 5 C 1.50704 * 109.47014 * 183.39336 * 3 2 1 6 6 H 1.08007 * 119.99514 * 245.40410 * 5 3 2 7 7 C 1.37872 * 120.00166 * 65.40376 * 5 3 2 8 8 N 1.31515 * 119.99880 * 9.69474 * 7 5 3 9 9 Si 1.86802 * 120.00129 * 189.69984 * 7 5 3 10 10 H 1.48489 * 109.47412 * 84.98983 * 9 7 5 11 11 H 1.48498 * 109.47029 * 204.99796 * 9 7 5 12 12 H 1.48504 * 109.46579 * 324.98865 * 9 7 5 13 13 N 1.46895 * 109.46956 * 63.39215 * 3 2 1 14 14 C 1.47439 * 111.00388 * 69.15835 * 13 3 2 15 15 C 1.54320 * 107.23638 * 123.25474 * 14 13 3 16 16 C 1.55260 * 103.08418 * 22.20655 * 15 14 13 17 17 C 1.47849 * 110.99970 * 190.00020 * 13 3 2 18 18 H 1.09004 * 110.37308 * 332.57460 * 17 13 3 19 19 C 1.50697 * 110.37617 * 94.80230 * 17 13 3 20 20 C 1.38241 * 119.97877 * 218.44834 * 19 17 13 21 21 C 1.38193 * 120.02624 * 180.02562 * 20 19 17 22 22 C 1.38458 * 119.97617 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02557 * 179.97438 * 22 21 20 24 24 C 1.38456 * 119.94808 * 0.02562 * 22 21 20 25 25 C 1.38199 * 119.97546 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47481 * 59.99914 * 1 2 3 27 27 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47129 * 300.00293 * 1 2 3 29 29 H 1.08997 * 109.46777 * 240.00029 * 2 1 3 30 30 H 1.09002 * 109.46744 * 120.00044 * 2 1 3 31 31 H 0.97002 * 119.99866 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.89213 * 242.66499 * 14 13 3 33 33 H 1.08999 * 109.88785 * 3.68904 * 14 13 3 34 34 H 1.09000 * 110.70756 * 140.66813 * 15 14 13 35 35 H 1.08999 * 110.70590 * 263.72850 * 15 14 13 36 36 H 1.09005 * 111.08344 * 206.38839 * 16 15 14 37 37 H 1.08998 * 110.94416 * 82.53079 * 16 15 14 38 38 H 1.07998 * 119.98564 * 0.27629 * 20 19 17 39 39 H 1.08008 * 120.01318 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.01547 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98935 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6279 1.9735 -0.8581 5 6 3.5447 1.4432 -0.0841 6 1 4.1315 1.8160 0.7425 7 6 4.1721 0.9681 -1.2161 8 7 3.4676 0.6935 -2.2922 9 14 6.0228 0.7145 -1.2215 10 1 6.3410 -0.6216 -0.6569 11 1 6.5297 0.7967 -2.6149 12 1 6.6690 1.7670 -0.3969 13 7 1.6184 2.1108 1.2383 14 6 2.3282 1.5570 2.4058 15 6 3.0443 2.7316 3.1051 16 6 2.2406 3.9698 2.6240 17 6 1.8828 3.5640 1.1725 18 1 2.7197 3.7676 0.5044 19 6 0.6523 4.3008 0.7099 20 6 0.7740 5.3790 -0.1467 21 6 -0.3537 6.0557 -0.5711 22 6 -1.6058 5.6531 -0.1385 23 9 -2.7089 6.3143 -0.5524 24 6 -1.7265 4.5731 0.7193 25 6 -0.5974 3.8978 1.1425 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9090 0.3589 -3.0885 32 1 1.6148 1.0975 3.0899 33 1 3.0581 0.8163 2.0790 34 1 2.9841 2.6295 4.1887 35 1 4.0835 2.7964 2.7827 36 1 2.8584 4.8677 2.6374 37 1 1.3410 4.1075 3.2239 38 1 1.7504 5.6901 -0.4875 39 1 -0.2583 6.8984 -1.2400 40 1 -2.7027 4.2584 1.0577 41 1 -0.6913 3.0551 1.8113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:17 Heat of formation + Delta-G solvation = -38.985182 kcal Electronic energy + Delta-G solvation = -22300.603954 eV Core-core repulsion = 19093.667878 eV Total energy + Delta-G solvation = -3206.936076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.80918 -40.78136 -39.03586 -35.86452 -33.66005 -32.34879 -31.94936 -31.06556 -28.28158 -28.07396 -24.85083 -23.95624 -23.45175 -22.47893 -21.14799 -20.44510 -18.63685 -18.33260 -17.52327 -16.99858 -16.50315 -16.49158 -16.13107 -15.46400 -14.93168 -14.75296 -14.58340 -14.45749 -14.29699 -13.94150 -13.70202 -13.46185 -13.40507 -13.19832 -12.81773 -12.64722 -12.45481 -12.24984 -11.96506 -11.90920 -11.80330 -11.69611 -11.47613 -11.44764 -11.27454 -10.95989 -10.40514 -9.92324 -9.35120 -8.90513 -8.04490 -6.19727 0.28879 0.42414 1.37201 1.40223 1.46516 2.41618 2.73069 3.18272 3.38782 3.46517 3.88020 3.96105 4.02877 4.07775 4.28900 4.35659 4.53103 4.54152 4.59718 4.72947 4.74737 4.86227 4.91650 5.03782 5.06795 5.12919 5.20484 5.22032 5.25516 5.26864 5.34608 5.41106 5.44708 5.50945 5.57915 5.68173 5.77241 5.82903 5.98969 6.07196 6.24059 6.44967 6.67304 7.02998 7.49218 8.94872 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.005771 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.055027 B = 4850.523843 C = 5022.080944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C 0.221 3.779 4 H 0.001 0.999 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.023 3.977 8 N -0.914 5.914 9 Si 0.937 3.063 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.513 5.513 14 C 0.044 3.956 15 C -0.131 4.131 16 C -0.106 4.106 17 C 0.109 3.891 18 H 0.042 0.958 19 C -0.073 4.073 20 C -0.100 4.100 21 C -0.156 4.156 22 C 0.071 3.929 23 F -0.150 7.150 24 C -0.157 4.157 25 C -0.063 4.063 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.259 0.741 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 7.190 9.133 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.135 4.135 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.553 5.553 9 Si 0.764 3.236 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.236 5.236 14 C -0.084 4.084 15 C -0.170 4.170 16 C -0.144 4.144 17 C 0.001 3.999 18 H 0.060 0.940 19 C -0.074 4.074 20 C -0.119 4.119 21 C -0.175 4.175 22 C 0.051 3.949 23 F -0.128 7.128 24 C -0.176 4.176 25 C -0.081 4.081 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.746 7.044 8.981 13.258 hybrid contribution 1.930 -0.169 -1.049 2.203 sum -4.816 6.875 7.932 11.549 Atomic orbital electron populations 1.21558 0.96082 0.99756 1.00823 1.21326 0.94750 0.98303 0.99086 1.19084 0.91534 0.90977 0.87043 0.98130 1.22029 0.93790 1.41393 1.01132 0.92376 1.25585 1.01264 0.95656 0.95187 1.70089 1.37016 1.45573 1.02616 0.85892 0.82141 0.78677 0.76872 1.20262 1.21611 1.19491 1.63686 1.54727 1.01445 1.03710 1.22724 0.96331 0.97252 0.92125 1.22740 0.98511 0.94711 1.00993 1.22688 1.00368 0.97797 0.93590 1.21309 0.92777 0.88811 0.97034 0.93999 1.20010 0.95527 0.95105 0.96785 1.21047 0.98802 0.95392 0.96624 1.21195 0.90773 1.02673 1.02850 1.17856 0.82707 0.94679 0.99609 1.91448 1.52159 1.80033 1.89201 1.21341 1.00961 0.95814 0.99440 1.20948 0.90383 0.98175 0.98641 0.95470 0.93663 0.91632 0.94540 0.94333 0.93206 0.90892 0.93504 0.89119 0.93102 0.90453 0.89751 0.85047 0.83486 0.83208 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.79 71.98 0.70 -4.10 16 2 C -0.10 -4.38 5.23 30.59 0.16 -4.22 16 3 C 0.22 10.49 1.51 44.17 0.07 10.56 16 4 H 0.00 0.04 8.02 -2.39 -0.02 0.02 16 5 C -0.54 -27.99 6.26 25.60 0.16 -27.83 16 6 H 0.06 2.94 6.11 -2.91 -0.02 2.93 16 7 C 0.02 1.24 5.17 84.65 0.44 1.68 16 8 N -0.91 -52.19 12.17 21.45 0.26 -51.93 16 9 Si 0.94 42.68 29.55 68.60 2.03 44.71 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.51 -19.50 3.40 -844.32 -2.87 -22.38 16 14 C 0.04 1.50 5.34 86.65 0.46 1.96 16 15 C -0.13 -3.77 6.74 31.82 0.21 -3.56 16 16 C -0.11 -2.95 6.49 32.02 0.21 -2.74 16 17 C 0.11 3.85 2.38 44.64 0.11 3.95 16 18 H 0.04 1.76 6.96 -2.38 -0.02 1.75 16 19 C -0.07 -2.38 5.02 -19.86 -0.10 -2.48 16 20 C -0.10 -3.05 9.68 22.26 0.22 -2.84 16 21 C -0.16 -4.35 10.03 22.31 0.22 -4.13 16 22 C 0.07 2.00 7.30 22.37 0.16 2.17 16 23 F -0.15 -4.21 17.27 44.97 0.78 -3.44 16 24 C -0.16 -4.24 10.03 22.31 0.22 -4.02 16 25 C -0.06 -1.86 9.23 22.26 0.21 -1.66 16 26 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 29 H 0.04 1.90 6.84 -2.39 -0.02 1.88 16 30 H 0.04 1.69 7.02 -2.39 -0.02 1.67 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.88 5.58 -2.39 -0.01 1.86 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.60 7.74 -2.39 -0.02 1.58 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 37 H 0.08 2.08 7.96 -2.39 -0.02 2.06 16 38 H 0.13 3.80 8.05 -2.91 -0.02 3.78 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.14 4.02 7.70 -2.91 -0.02 4.00 16 Total: -1.00 -57.62 328.71 4.65 -52.98 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.00 Total: 17.31 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.45 Total: -37.25 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.61 Total: -74.31 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -57.62 4.65 -52.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.992 kcal (2) G-P(sol) polarization free energy of solvation -57.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds