Wall clock time and date at job start Mon Mar 30 2020 02:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46681 * 2 1 4 4 H 1.09003 * 109.46433 * 179.25689 * 3 2 1 5 5 C 1.50703 * 109.47122 * 299.24969 * 3 2 1 6 6 H 1.08000 * 120.00107 * 120.00072 * 5 3 2 7 7 C 1.37876 * 120.00002 * 300.00231 * 5 3 2 8 8 N 1.31516 * 120.00203 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99890 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46887 * 90.00232 * 9 7 5 11 11 H 1.48498 * 109.47357 * 210.00156 * 9 7 5 12 12 H 1.48496 * 109.47343 * 330.00009 * 9 7 5 13 13 N 1.46893 * 109.47129 * 59.25408 * 3 2 1 14 14 C 1.47443 * 111.00185 * 57.95977 * 13 3 2 15 15 C 1.54317 * 107.22942 * 123.25797 * 14 13 3 16 16 C 1.55138 * 103.02345 * 22.28262 * 15 14 13 17 17 C 1.47842 * 110.99870 * 178.80639 * 13 3 2 18 18 H 1.09001 * 110.37532 * 332.46369 * 17 13 3 19 19 C 1.50700 * 110.37759 * 94.80562 * 17 13 3 20 20 C 1.38248 * 119.97422 * 39.72066 * 19 17 13 21 21 C 1.38201 * 120.02448 * 179.76878 * 20 19 17 22 22 C 1.38462 * 119.97461 * 0.51078 * 21 20 19 23 23 F 1.35094 * 120.02636 * 179.76558 * 22 21 20 24 24 C 1.38461 * 119.94825 * 359.74856 * 22 21 20 25 25 C 1.38203 * 119.97602 * 359.97438 * 24 22 21 26 26 H 1.08999 * 109.47692 * 65.17023 * 1 2 3 27 27 H 1.08996 * 109.46860 * 185.16724 * 1 2 3 28 28 H 1.08999 * 109.47096 * 305.17088 * 1 2 3 29 29 H 1.09003 * 109.46994 * 240.00341 * 2 1 3 30 30 H 1.08994 * 109.47409 * 119.99471 * 2 1 3 31 31 H 0.97003 * 119.99650 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.88585 * 242.65803 * 14 13 3 33 33 H 1.08993 * 109.88704 * 3.85165 * 14 13 3 34 34 H 1.08995 * 110.70438 * 140.67065 * 15 14 13 35 35 H 1.09001 * 110.70589 * 263.72362 * 15 14 13 36 36 H 1.09001 * 110.99361 * 206.25440 * 16 15 14 37 37 H 1.09001 * 110.98993 * 82.43501 * 16 15 14 38 38 H 1.07997 * 119.98214 * 0.02562 * 20 19 17 39 39 H 1.07995 * 120.01109 * 180.25837 * 21 20 19 40 40 H 1.07997 * 120.01330 * 180.02562 * 24 22 21 41 41 H 1.07990 * 119.98916 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0133 5 6 1.5528 2.1476 -1.2397 6 1 0.9307 3.0261 -1.1521 7 6 1.9013 1.6711 -2.4857 8 7 2.6584 0.6011 -2.5924 9 14 1.2968 2.5446 -4.0223 10 1 2.2795 3.5849 -4.4192 11 1 1.1456 1.5605 -5.1240 12 1 -0.0151 3.1828 -3.7453 13 7 1.5356 2.1402 1.1903 14 6 1.9528 1.4493 2.4242 15 6 2.7230 2.4739 3.2835 16 6 2.2097 3.8361 2.7474 17 6 2.0322 3.5319 1.2389 18 1 2.9878 3.6121 0.7207 19 6 1.0232 4.4708 0.6295 20 6 -0.3260 4.2822 0.8649 21 6 -1.2519 5.1455 0.3104 22 6 -0.8285 6.1932 -0.4897 23 9 -1.7331 7.0348 -1.0361 24 6 0.5227 6.3778 -0.7291 25 6 1.4472 5.5167 -0.1690 26 1 -0.3634 0.4315 -0.9326 27 1 -0.3633 -1.0235 0.0926 28 1 -0.3633 0.5919 0.8400 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.9033 0.2657 -3.4690 32 1 1.0756 1.0959 2.9660 33 1 2.6023 0.6096 2.1773 34 1 2.4746 2.3564 4.3383 35 1 3.7976 2.3761 3.1290 36 1 2.9498 4.6210 2.9031 37 1 1.2576 4.1027 3.2065 38 1 -0.6561 3.4625 1.4857 39 1 -2.3055 5.0005 0.4979 40 1 0.8541 7.1949 -1.3527 41 1 2.5011 5.6608 -0.3552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:21 Heat of formation + Delta-G solvation = -19.695984 kcal Electronic energy + Delta-G solvation = -22670.978761 eV Core-core repulsion = 19464.879127 eV Total energy + Delta-G solvation = -3206.099634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.48654 -39.43564 -37.56080 -34.35247 -31.61966 -31.00565 -30.61813 -29.34363 -27.09008 -25.95779 -23.35630 -22.65352 -22.10118 -20.99975 -19.81617 -18.60371 -17.23084 -16.50860 -15.70797 -15.66362 -15.20550 -15.06264 -14.34811 -14.08761 -13.62753 -13.29342 -13.10516 -12.94423 -12.83137 -12.50165 -12.31721 -12.06554 -11.75330 -11.46994 -11.18876 -10.94067 -10.80522 -10.65553 -10.58103 -10.43758 -10.36798 -10.22131 -9.90259 -9.63028 -9.39001 -8.86789 -8.58030 -8.39639 -7.86242 -7.23579 -5.97665 -3.99514 1.67381 1.77347 3.31624 3.39243 3.45675 4.08662 4.44447 4.72613 4.86388 5.07201 5.19735 5.25248 5.30843 5.34328 5.45208 5.61825 5.84252 5.84838 5.93637 5.99346 6.12935 6.21064 6.32780 6.37044 6.45256 6.51607 6.54686 6.60824 6.62754 6.64710 6.75269 6.82131 7.11652 7.14180 7.26173 7.40175 7.42367 7.62971 7.73060 7.90117 8.13091 8.34968 8.58658 9.07797 9.65169 11.09061 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.009707 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.339987 B = 2883.788216 C = 4378.494073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 C 0.214 3.786 4 H -0.003 1.003 5 C -0.492 4.492 6 H 0.070 0.930 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.515 5.515 14 C 0.042 3.958 15 C -0.141 4.141 16 C -0.122 4.122 17 C 0.122 3.878 18 H 0.063 0.937 19 C -0.038 4.038 20 C -0.057 4.057 21 C -0.160 4.160 22 C 0.076 3.924 23 F -0.152 7.152 24 C -0.159 4.159 25 C -0.087 4.087 26 H 0.054 0.946 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.013 0.987 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 6.408 9.145 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.015 0.985 5 C -0.531 4.531 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.240 5.240 14 C -0.087 4.087 15 C -0.180 4.180 16 C -0.160 4.160 17 C 0.014 3.986 18 H 0.081 0.919 19 C -0.039 4.039 20 C -0.075 4.075 21 C -0.179 4.179 22 C 0.057 3.943 23 F -0.131 7.131 24 C -0.178 4.178 25 C -0.105 4.105 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.444 6.292 8.930 11.195 hybrid contribution 0.443 0.422 -1.258 1.399 sum -2.000 6.715 7.672 10.390 Atomic orbital electron populations 1.21447 0.97320 0.97163 1.01748 1.21595 0.95192 0.98152 1.00039 1.19449 0.92490 0.90900 0.86397 0.98527 1.21217 1.30681 1.11894 0.89287 0.91171 1.24847 0.95312 0.95010 0.98744 1.69876 1.37182 1.22856 1.23545 0.86713 0.79500 0.79415 0.83250 1.20876 1.21429 1.19761 1.63536 1.57977 0.99998 1.02449 1.22769 0.97783 0.96365 0.91752 1.22789 0.99923 0.95729 0.99533 1.22775 1.01028 0.96848 0.95359 1.21198 0.94751 0.89352 0.93338 0.91902 1.19688 0.94461 0.93920 0.95802 1.20815 0.91922 0.96735 0.98027 1.21072 1.00636 0.95830 1.00391 1.17672 0.86580 0.91474 0.98537 1.91430 1.67114 1.70094 1.84433 1.20947 0.91395 1.02140 1.03302 1.20828 0.99343 0.94273 0.96076 0.92739 0.96778 0.93587 0.89048 0.96837 0.93189 0.91852 0.92891 0.91692 0.92002 0.91621 0.91030 0.84655 0.85660 0.85687 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.49 37.16 0.35 -2.20 16 2 C -0.11 -2.56 5.18 -26.73 -0.14 -2.70 16 3 C 0.21 4.98 1.38 -68.86 -0.09 4.89 16 4 H 0.00 -0.07 8.06 -51.93 -0.42 -0.49 16 5 C -0.49 -12.56 6.92 -34.44 -0.24 -12.80 16 6 H 0.07 1.81 5.20 -52.49 -0.27 1.54 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -24.85 11.31 55.43 0.63 -24.22 16 9 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.51 -9.89 3.10 -218.22 -0.68 -10.56 16 14 C 0.04 0.69 6.15 -2.84 -0.02 0.67 16 15 C -0.14 -1.94 6.94 -24.91 -0.17 -2.11 16 16 C -0.12 -1.71 6.47 -24.60 -0.16 -1.86 16 17 C 0.12 2.14 2.23 -67.34 -0.15 1.99 16 18 H 0.06 1.22 7.64 -51.93 -0.40 0.82 16 19 C -0.04 -0.66 2.84 -104.61 -0.30 -0.96 16 20 C -0.06 -0.96 8.94 -39.59 -0.35 -1.32 16 21 C -0.16 -2.63 10.03 -39.51 -0.40 -3.03 16 22 C 0.08 1.30 7.30 -39.42 -0.29 1.01 16 23 F -0.15 -2.56 17.27 2.25 0.04 -2.52 16 24 C -0.16 -2.61 10.03 -39.51 -0.40 -3.00 16 25 C -0.09 -1.46 9.53 -39.59 -0.38 -1.84 16 26 H 0.05 1.28 7.43 -51.93 -0.39 0.89 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.93 7.42 -51.93 -0.39 0.54 16 29 H 0.09 2.38 6.05 -51.93 -0.31 2.07 16 30 H 0.01 0.28 6.40 -51.93 -0.33 -0.05 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.94 6.20 -51.93 -0.32 0.61 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 38 H 0.14 2.25 7.74 -52.49 -0.41 1.84 16 39 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 1.93 8.04 -52.49 -0.42 1.50 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -27.18 324.51 -9.13 -36.31 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.16 Total: 1.35 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.82 Total: -21.69 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.05 Total: -34.78 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.18 -9.13 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.610 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds