Wall clock time and date at job start Mon Mar 30 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47006 * 2 1 4 4 H 1.09000 * 109.47595 * 305.84294 * 3 2 1 5 5 C 1.50708 * 109.46854 * 185.84642 * 3 2 1 6 6 H 1.08006 * 119.99667 * 240.00311 * 5 3 2 7 7 C 1.37873 * 120.00121 * 60.00430 * 5 3 2 8 8 N 1.31511 * 120.00198 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00020 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47146 * 89.99622 * 9 7 5 11 11 H 1.48493 * 109.46828 * 209.99906 * 9 7 5 12 12 H 1.48499 * 109.46633 * 329.99788 * 9 7 5 13 13 N 1.46898 * 109.47175 * 65.84752 * 3 2 1 14 14 C 1.47440 * 111.00135 * 187.92274 * 13 3 2 15 15 C 1.54329 * 107.36889 * 236.65932 * 14 13 3 16 16 C 1.55392 * 102.89837 * 337.89725 * 15 14 13 17 17 C 1.47845 * 110.99754 * 67.07655 * 13 3 2 18 18 H 1.08997 * 110.38088 * 27.53826 * 17 13 3 19 19 C 1.50699 * 110.37256 * 265.30418 * 17 13 3 20 20 C 1.38265 * 119.98327 * 140.00546 * 19 17 13 21 21 C 1.38230 * 120.05071 * 180.02562 * 20 19 17 22 22 C 1.38218 * 120.02514 * 359.97438 * 21 20 19 23 23 C 1.38436 * 119.97168 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.02404 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.99022 * 319.72694 * 19 17 13 26 26 H 1.09000 * 109.46971 * 305.94625 * 1 2 3 27 27 H 1.08996 * 109.47364 * 65.95444 * 1 2 3 28 28 H 1.09003 * 109.47068 * 185.95271 * 1 2 3 29 29 H 1.09007 * 109.47066 * 240.00390 * 2 1 3 30 30 H 1.08998 * 109.47309 * 120.00386 * 2 1 3 31 31 H 0.96994 * 120.00283 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.88984 * 356.14514 * 14 13 3 33 33 H 1.08994 * 109.88930 * 117.17177 * 14 13 3 34 34 H 1.08999 * 110.70111 * 96.18197 * 15 14 13 35 35 H 1.08997 * 110.70314 * 219.41599 * 15 14 13 36 36 H 1.09005 * 110.87137 * 277.38827 * 16 15 14 37 37 H 1.08997 * 111.02458 * 153.63816 * 16 15 14 38 38 H 1.08004 * 119.97927 * 359.97438 * 20 19 17 39 39 H 1.07999 * 119.98429 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.01507 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.01328 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5401 1.4449 -0.1447 6 1 4.1561 1.8856 0.6252 7 6 4.1260 0.8845 -1.2599 8 7 3.3759 0.3475 -2.1971 9 14 5.9854 0.8869 -1.4389 10 1 6.5428 -0.3481 -0.8314 11 1 6.3439 0.9355 -2.8791 12 1 6.5475 2.0754 -0.7485 13 7 1.6689 2.0930 1.2637 14 6 1.9759 3.5346 1.2260 15 6 2.9117 3.8376 2.4152 16 6 2.6290 2.6593 3.3880 17 6 2.3906 1.4876 2.4032 18 1 3.3418 1.0709 2.0718 19 6 1.5477 0.4188 3.0499 20 6 2.1341 -0.7564 3.4821 21 6 1.3621 -1.7379 4.0750 22 6 0.0031 -1.5452 4.2369 23 6 -0.5850 -0.3690 3.8045 24 9 -1.9133 -0.1793 3.9627 25 6 0.1902 0.6160 3.2159 26 1 -0.3633 0.6033 0.8320 27 1 -0.3634 0.4187 -0.9384 28 1 -0.3633 -1.0221 0.1066 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.7880 -0.0464 -2.9818 32 1 2.4745 3.7832 0.2892 33 1 1.0565 4.1122 1.3211 34 1 3.9540 3.8321 2.0965 35 1 2.6534 4.7912 2.8756 36 1 1.7386 2.8543 3.9858 37 1 3.4907 2.4638 4.0262 38 1 3.1959 -0.9080 3.3557 39 1 1.8213 -2.6552 4.4126 40 1 -0.6000 -2.3123 4.6998 41 1 -0.2669 1.5357 2.8819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:26 Heat of formation + Delta-G solvation = -22.667023 kcal Electronic energy + Delta-G solvation = -22799.810313 eV Core-core repulsion = 19593.581845 eV Total energy + Delta-G solvation = -3206.228468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.53494 -39.52484 -37.57113 -34.12518 -31.76130 -31.39783 -30.13820 -29.47846 -27.29333 -26.18837 -23.10929 -22.73285 -21.96471 -20.45308 -20.24517 -18.91936 -17.22004 -16.12952 -15.92367 -15.68955 -15.26884 -15.17378 -14.76085 -14.22641 -13.66448 -13.31089 -13.06192 -12.87719 -12.60613 -12.41692 -12.26011 -11.91541 -11.55433 -11.45043 -11.22889 -11.05937 -10.94845 -10.66697 -10.62329 -10.56236 -10.29922 -10.22148 -10.00197 -9.60259 -9.49309 -9.04092 -8.45864 -8.40690 -8.12325 -7.23906 -6.02165 -4.15413 1.56168 1.64903 3.22734 3.31037 3.32365 3.98225 4.35461 4.61449 4.89644 5.07720 5.21893 5.27979 5.28496 5.37207 5.55061 5.60373 5.76140 5.83131 6.05181 6.09849 6.27192 6.28295 6.37469 6.41270 6.42594 6.49122 6.54131 6.64264 6.66132 6.74634 6.77475 6.79907 7.07253 7.13633 7.21739 7.31565 7.37059 7.61770 7.75149 7.95921 8.13022 8.25720 8.43873 8.94901 9.51695 10.97264 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.006706 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.202477 B = 4174.369799 C = 4513.345105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.210 3.790 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.521 5.521 14 C 0.051 3.949 15 C -0.136 4.136 16 C -0.120 4.120 17 C 0.104 3.896 18 H 0.091 0.909 19 C -0.011 4.011 20 C -0.128 4.128 21 C -0.097 4.097 22 C -0.170 4.170 23 C 0.085 3.915 24 F -0.149 7.149 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.022 0.978 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 0.128 11.057 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C 0.104 3.896 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.245 5.245 14 C -0.078 4.078 15 C -0.174 4.174 16 C -0.158 4.158 17 C -0.005 4.005 18 H 0.108 0.892 19 C -0.012 4.012 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.189 4.189 23 C 0.066 3.934 24 F -0.128 7.128 25 C -0.140 4.140 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.700 -0.014 10.904 11.515 hybrid contribution 1.671 -0.053 -0.442 1.730 sum -2.029 -0.067 10.462 10.657 Atomic orbital electron populations 1.21779 0.99076 0.98552 1.00428 1.21581 0.92173 0.99067 1.01983 1.19445 0.93165 0.91469 0.85531 0.94440 1.21729 0.92740 1.38551 1.05217 0.92397 1.24907 0.97599 0.95040 0.95774 1.69876 1.34665 1.38212 1.09240 0.86724 0.86365 0.78360 0.77337 1.20707 1.21219 1.20051 1.63746 1.54548 1.01405 1.04764 1.22575 0.96852 0.90458 0.97866 1.22779 1.00431 0.97541 0.96683 1.22770 1.00856 0.94953 0.97215 1.21539 0.95991 0.92292 0.90672 0.89167 1.19730 0.93092 0.94569 0.93798 1.21121 1.00412 0.93519 0.99608 1.20838 0.92806 0.98945 0.98950 1.20952 0.96056 0.97022 1.04824 1.17764 0.77346 0.96120 1.02127 1.91449 1.31779 1.95619 1.93905 1.20963 0.94017 0.99488 0.99497 0.92863 0.94574 0.95886 0.89242 0.94483 0.92879 0.91904 0.92606 0.91600 0.92069 0.91535 0.91792 0.85773 0.85781 0.85780 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.81 37.16 0.36 -2.60 16 2 C -0.11 -2.55 4.89 -26.73 -0.13 -2.68 16 3 C 0.21 4.95 1.51 -68.86 -0.10 4.84 16 4 H 0.04 1.00 8.09 -51.93 -0.42 0.58 16 5 C -0.54 -13.69 6.54 -34.44 -0.23 -13.92 16 6 H 0.06 1.45 6.52 -52.48 -0.34 1.11 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.55 16 9 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.52 -10.30 3.53 -218.21 -0.77 -11.07 16 14 C 0.05 0.92 6.39 -2.83 -0.02 0.90 16 15 C -0.14 -2.12 6.97 -24.77 -0.17 -2.29 16 16 C -0.12 -1.83 6.48 -24.45 -0.16 -1.99 16 17 C 0.10 1.87 1.79 -67.34 -0.12 1.75 16 18 H 0.09 1.86 5.63 -51.93 -0.29 1.57 16 19 C -0.01 -0.19 3.22 -104.64 -0.34 -0.52 16 20 C -0.13 -1.99 9.09 -39.57 -0.36 -2.35 16 21 C -0.10 -1.34 10.04 -39.59 -0.40 -1.74 16 22 C -0.17 -2.41 10.03 -39.52 -0.40 -2.80 16 23 C 0.09 1.36 7.30 -39.42 -0.29 1.08 16 24 F -0.15 -2.40 17.27 2.25 0.04 -2.36 16 25 C -0.12 -2.02 7.25 -39.52 -0.29 -2.30 16 26 H 0.05 1.07 5.52 -51.93 -0.29 0.79 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.36 5.93 -51.93 -0.31 2.05 16 30 H 0.04 0.85 5.48 -51.93 -0.28 0.56 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.27 7.16 -51.93 -0.37 0.90 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.12 1.82 8.04 -52.48 -0.42 1.40 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.14 2.36 7.64 -52.49 -0.40 1.96 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -26.41 320.73 -9.07 -35.48 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.06 Total: 4.17 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -2.72 Total: -22.89 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.14 Total: -34.62 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.41 -9.07 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.813 kcal (2) G-P(sol) polarization free energy of solvation -26.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds