Wall clock time and date at job start Mon Mar 30 2020 02:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47413 * 2 1 4 4 H 1.09006 * 109.47039 * 302.88037 * 3 2 1 5 5 C 1.50702 * 109.47336 * 182.88416 * 3 2 1 6 6 H 1.07999 * 119.99607 * 240.00209 * 5 3 2 7 7 C 1.37870 * 120.00269 * 59.99548 * 5 3 2 8 8 N 1.31516 * 119.99999 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46920 * 90.00353 * 9 7 5 11 11 H 1.48500 * 109.47091 * 209.99752 * 9 7 5 12 12 H 1.48497 * 109.47092 * 330.00503 * 9 7 5 13 13 N 1.46900 * 109.47318 * 62.87995 * 3 2 1 14 14 C 1.47902 * 110.99978 * 60.30322 * 13 3 2 15 15 C 1.53989 * 107.05674 * 145.84416 * 14 13 3 16 16 C 1.54598 * 105.14205 * 358.77713 * 15 14 13 17 17 H 1.09001 * 110.72053 * 96.57547 * 16 15 14 18 18 C 1.50700 * 110.72584 * 219.68040 * 16 15 14 19 19 C 1.38273 * 119.98281 * 56.12638 * 18 16 15 20 20 C 1.38223 * 120.04592 * 179.97438 * 19 18 16 21 21 C 1.38216 * 120.02818 * 0.02562 * 20 19 18 22 22 C 1.38433 * 119.97329 * 359.74776 * 21 20 19 23 23 F 1.35104 * 120.02682 * 180.27309 * 22 21 20 24 24 C 1.38168 * 119.98904 * 236.14938 * 18 16 15 25 25 C 1.48730 * 111.04740 * 177.88436 * 13 3 2 26 26 H 1.08999 * 109.47530 * 174.64268 * 1 2 3 27 27 H 1.09004 * 109.46926 * 294.64694 * 1 2 3 28 28 H 1.09005 * 109.47015 * 54.63945 * 1 2 3 29 29 H 1.09001 * 109.47034 * 239.99704 * 2 1 3 30 30 H 1.08996 * 109.47116 * 119.99921 * 2 1 3 31 31 H 0.96995 * 120.00222 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.91371 * 26.49639 * 14 13 3 33 33 H 1.08992 * 109.92091 * 265.20043 * 14 13 3 34 34 H 1.09004 * 110.30936 * 239.85848 * 15 14 13 35 35 H 1.09004 * 110.39453 * 117.73633 * 15 14 13 36 36 H 1.08000 * 119.97539 * 0.02562 * 19 18 16 37 37 H 1.08009 * 119.98273 * 180.02562 * 20 19 18 38 38 H 1.08008 * 120.01195 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.01334 * 359.97438 * 24 18 16 40 40 H 1.08999 * 110.83736 * 81.96173 * 25 13 3 41 41 H 1.09000 * 110.58259 * 318.77122 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6352 1.9710 -0.8631 5 6 3.5454 1.4431 -0.0715 6 1 4.1233 1.8972 0.7198 7 6 4.1847 0.8637 -1.1469 8 7 3.4809 0.3109 -2.1106 9 14 6.0506 0.8638 -1.2351 10 1 6.5772 -0.3604 -0.5798 11 1 6.4789 0.8875 -2.6567 12 1 6.5790 2.0642 -0.5387 13 7 1.6081 2.1147 1.2327 14 6 2.1457 1.4279 2.4272 15 6 2.4283 2.5127 3.4829 16 6 2.0487 3.8477 2.8019 17 1 1.0372 4.1468 3.0766 18 6 3.0374 4.9279 3.1577 19 6 4.3842 4.7424 2.9054 20 6 5.2921 5.7325 3.2308 21 6 4.8546 6.9092 3.8091 22 6 3.5060 7.0979 4.0578 23 9 3.0765 8.2499 4.6180 24 6 2.5978 6.1031 3.7362 25 6 2.1287 3.5065 1.2927 26 1 -0.3634 -1.0231 -0.0959 27 1 -0.3633 0.4286 0.9341 28 1 -0.3633 0.5948 -0.8381 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9306 -0.0963 -2.8673 32 1 3.0693 0.9082 2.1724 33 1 1.4113 0.7194 2.8102 34 1 3.4845 2.5123 3.7524 35 1 1.8128 2.3511 4.3679 36 1 4.7269 3.8234 2.4532 37 1 6.3439 5.5867 3.0329 38 1 5.5642 7.6829 4.0628 39 1 1.5458 6.2478 3.9331 40 1 1.4997 4.1812 0.7119 41 1 3.1607 3.5450 0.9438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:24 Heat of formation + Delta-G solvation = -27.172094 kcal Electronic energy + Delta-G solvation = -21841.886074 eV Core-core repulsion = 18635.462252 eV Total energy + Delta-G solvation = -3206.423823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.87067 -39.62853 -37.84769 -34.47495 -32.08644 -31.18022 -30.41474 -29.21506 -27.58017 -26.11258 -23.39841 -22.72846 -22.32088 -21.12459 -19.82227 -18.77766 -17.11999 -16.62576 -16.25168 -16.02643 -15.56121 -15.30684 -14.76758 -14.25528 -13.80620 -13.42510 -13.14065 -12.93842 -12.80611 -12.49530 -12.39834 -12.23774 -11.83108 -11.50763 -11.33861 -11.08879 -10.93376 -10.88266 -10.63059 -10.59852 -10.44245 -10.05618 -10.01403 -9.68737 -9.52654 -9.10272 -8.85849 -8.52138 -8.39578 -7.21169 -6.02923 -4.15867 1.22521 1.26682 3.22513 3.30674 3.31407 3.64149 4.23981 4.34992 4.67492 4.84394 5.04375 5.20089 5.20904 5.30647 5.33954 5.42831 5.47964 5.61325 5.93899 5.95147 6.06992 6.13583 6.22331 6.27093 6.33545 6.41868 6.44636 6.49622 6.61716 6.66945 6.71526 6.83370 6.88110 6.96582 7.05314 7.17144 7.27485 7.58167 7.71116 7.94002 8.11367 8.20390 8.40376 8.93807 9.50907 10.96715 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.005414 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.194578 B = 5170.559212 C = 6275.606700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.204 3.796 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.515 5.515 14 C 0.040 3.960 15 C -0.120 4.120 16 C -0.060 4.060 17 H 0.083 0.917 18 C -0.031 4.031 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.165 4.165 22 C 0.093 3.907 23 F -0.146 7.146 24 C -0.154 4.154 25 C 0.050 3.950 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 7.948 10.463 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.098 3.902 4 H 0.057 0.943 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.239 5.239 14 C -0.089 4.089 15 C -0.158 4.158 16 C -0.079 4.079 17 H 0.102 0.898 18 C -0.032 4.032 19 C -0.138 4.138 20 C -0.108 4.108 21 C -0.184 4.184 22 C 0.074 3.926 23 F -0.124 7.124 24 C -0.173 4.173 25 C -0.078 4.078 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.084 0.916 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.479 7.868 10.276 12.951 hybrid contribution 1.943 0.193 -0.087 1.954 sum 1.463 8.061 10.189 13.074 Atomic orbital electron populations 1.21705 0.98844 0.98365 1.00552 1.21586 0.92213 0.99092 1.02019 1.19413 0.92794 0.91093 0.86947 0.94297 1.21677 0.92587 1.37626 1.06222 0.92461 1.24901 0.97810 0.95037 0.95579 1.69870 1.34958 1.37566 1.09757 0.86721 0.86342 0.78377 0.77336 1.20708 1.21190 1.19994 1.65134 1.54308 1.00956 1.03528 1.22721 0.99579 0.95924 0.90665 1.22524 1.00840 0.94031 0.98394 1.21188 0.96713 0.92328 0.97671 0.89817 1.19800 0.94482 0.94052 0.94831 1.21254 0.92657 1.00042 0.99865 1.21009 1.00106 0.92570 0.97074 1.21062 0.93905 0.99681 1.03783 1.17678 0.93034 0.82894 0.99016 1.91473 1.90586 1.47382 1.82984 1.21043 0.99806 0.93529 1.02891 1.23206 1.00537 0.92041 0.92059 0.95619 0.93613 0.94125 0.89033 0.94939 0.92860 0.91911 0.92237 0.91871 0.92014 0.84828 0.85201 0.85244 0.84966 0.91604 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.71 37.16 0.36 -2.39 16 2 C -0.11 -2.55 5.07 -26.73 -0.14 -2.69 16 3 C 0.20 4.84 1.88 -68.86 -0.13 4.71 16 4 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.54 -13.69 6.34 -34.44 -0.22 -13.91 16 6 H 0.06 1.43 6.05 -52.49 -0.32 1.11 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.16 11.30 55.43 0.63 -23.54 16 9 Si 0.88 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.52 -10.40 4.78 -223.72 -1.07 -11.47 16 14 C 0.04 0.73 5.00 -2.76 -0.01 0.71 16 15 C -0.12 -1.82 6.39 -25.38 -0.16 -1.98 16 16 C -0.06 -0.91 3.27 -89.91 -0.29 -1.20 16 17 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 18 C -0.03 -0.44 4.94 -104.63 -0.52 -0.96 16 19 C -0.12 -1.70 8.12 -39.57 -0.32 -2.02 16 20 C -0.09 -1.10 10.04 -39.60 -0.40 -1.50 16 21 C -0.17 -1.99 10.03 -39.52 -0.40 -2.39 16 22 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 23 F -0.15 -1.94 17.27 2.25 0.04 -1.90 16 24 C -0.15 -2.04 9.66 -39.52 -0.38 -2.42 16 25 C 0.05 0.92 5.75 -1.79 -0.01 0.91 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.87 7.85 -51.93 -0.41 0.47 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 2.37 6.00 -51.93 -0.31 2.06 16 30 H 0.03 0.73 6.97 -51.93 -0.36 0.37 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.06 1.29 6.08 -51.93 -0.32 0.98 16 33 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.06 0.93 6.89 -51.93 -0.36 0.58 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 2.02 7.28 -52.49 -0.38 1.64 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 39 H 0.13 1.55 7.98 -52.49 -0.42 1.13 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.33 4.96 -51.93 -0.26 1.07 16 LS Contribution 324.28 15.07 4.89 4.89 Total: -1.00 -26.33 324.28 -9.60 -35.92 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.06 Total: 3.25 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -3.00 Total: -22.46 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.44 Total: -35.01 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.33 -9.60 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.750 kcal (2) G-P(sol) polarization free energy of solvation -26.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds