Wall clock time and date at job start Mon Mar 30 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47413 * 2 1 4 4 H 1.09006 * 109.47039 * 302.88037 * 3 2 1 5 5 C 1.50702 * 109.47336 * 182.88416 * 3 2 1 6 6 H 1.07999 * 119.99607 * 240.00209 * 5 3 2 7 7 C 1.37870 * 120.00269 * 59.99548 * 5 3 2 8 8 N 1.31516 * 119.99999 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46920 * 90.00353 * 9 7 5 11 11 H 1.48500 * 109.47091 * 209.99752 * 9 7 5 12 12 H 1.48497 * 109.47092 * 330.00503 * 9 7 5 13 13 N 1.46900 * 109.47318 * 62.87995 * 3 2 1 14 14 C 1.47902 * 110.99978 * 60.30322 * 13 3 2 15 15 C 1.53989 * 107.05674 * 145.84416 * 14 13 3 16 16 C 1.54598 * 105.14205 * 358.77713 * 15 14 13 17 17 H 1.09001 * 110.72053 * 96.57547 * 16 15 14 18 18 C 1.50700 * 110.72584 * 219.68040 * 16 15 14 19 19 C 1.38273 * 119.98281 * 56.12638 * 18 16 15 20 20 C 1.38223 * 120.04592 * 179.97438 * 19 18 16 21 21 C 1.38216 * 120.02818 * 0.02562 * 20 19 18 22 22 C 1.38433 * 119.97329 * 359.74776 * 21 20 19 23 23 F 1.35104 * 120.02682 * 180.27309 * 22 21 20 24 24 C 1.38168 * 119.98904 * 236.14938 * 18 16 15 25 25 C 1.48730 * 111.04740 * 177.88436 * 13 3 2 26 26 H 1.08999 * 109.47530 * 174.64268 * 1 2 3 27 27 H 1.09004 * 109.46926 * 294.64694 * 1 2 3 28 28 H 1.09005 * 109.47015 * 54.63945 * 1 2 3 29 29 H 1.09001 * 109.47034 * 239.99704 * 2 1 3 30 30 H 1.08996 * 109.47116 * 119.99921 * 2 1 3 31 31 H 0.96995 * 120.00222 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.91371 * 26.49639 * 14 13 3 33 33 H 1.08992 * 109.92091 * 265.20043 * 14 13 3 34 34 H 1.09004 * 110.30936 * 239.85848 * 15 14 13 35 35 H 1.09004 * 110.39453 * 117.73633 * 15 14 13 36 36 H 1.08000 * 119.97539 * 0.02562 * 19 18 16 37 37 H 1.08009 * 119.98273 * 180.02562 * 20 19 18 38 38 H 1.08008 * 120.01195 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.01334 * 359.97438 * 24 18 16 40 40 H 1.08999 * 110.83736 * 81.96173 * 25 13 3 41 41 H 1.09000 * 110.58259 * 318.77122 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6352 1.9710 -0.8631 5 6 3.5454 1.4431 -0.0715 6 1 4.1233 1.8972 0.7198 7 6 4.1847 0.8637 -1.1469 8 7 3.4809 0.3109 -2.1106 9 14 6.0506 0.8638 -1.2351 10 1 6.5772 -0.3604 -0.5798 11 1 6.4789 0.8875 -2.6567 12 1 6.5790 2.0642 -0.5387 13 7 1.6081 2.1147 1.2327 14 6 2.1457 1.4279 2.4272 15 6 2.4283 2.5127 3.4829 16 6 2.0487 3.8477 2.8019 17 1 1.0372 4.1468 3.0766 18 6 3.0374 4.9279 3.1577 19 6 4.3842 4.7424 2.9054 20 6 5.2921 5.7325 3.2308 21 6 4.8546 6.9092 3.8091 22 6 3.5060 7.0979 4.0578 23 9 3.0765 8.2499 4.6180 24 6 2.5978 6.1031 3.7362 25 6 2.1287 3.5065 1.2927 26 1 -0.3634 -1.0231 -0.0959 27 1 -0.3633 0.4286 0.9341 28 1 -0.3633 0.5948 -0.8381 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9306 -0.0963 -2.8673 32 1 3.0693 0.9082 2.1724 33 1 1.4113 0.7194 2.8102 34 1 3.4845 2.5123 3.7524 35 1 1.8128 2.3511 4.3679 36 1 4.7269 3.8234 2.4532 37 1 6.3439 5.5867 3.0329 38 1 5.5642 7.6829 4.0628 39 1 1.5458 6.2478 3.9331 40 1 1.4997 4.1812 0.7119 41 1 3.1607 3.5450 0.9438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:23 Heat of formation + Delta-G solvation = -39.672956 kcal Electronic energy + Delta-G solvation = -21842.428152 eV Core-core repulsion = 18635.462252 eV Total energy + Delta-G solvation = -3206.965901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.87984 -40.85264 -39.22165 -36.09854 -33.83871 -32.61403 -31.50307 -30.65611 -28.96381 -27.90519 -25.07594 -23.81029 -23.53497 -22.73938 -21.16186 -20.42136 -18.46368 -18.20223 -17.40631 -17.07079 -16.98915 -16.57074 -16.11508 -15.98125 -15.00092 -14.89068 -14.68617 -14.30156 -14.14350 -14.01864 -13.73979 -13.59516 -13.24900 -13.02695 -12.88931 -12.71255 -12.46381 -12.31097 -12.20019 -12.06335 -11.88038 -11.75136 -11.56273 -11.44159 -11.22163 -10.94151 -10.41050 -9.87687 -9.58412 -8.94371 -8.01253 -6.22039 0.19202 0.27225 1.37962 1.40444 1.47879 2.41328 2.61441 3.17619 3.19901 3.50227 3.79903 3.85125 4.01808 4.05839 4.20474 4.28743 4.34717 4.44843 4.59194 4.64316 4.74369 4.78800 4.91811 4.95660 4.96867 5.07696 5.13120 5.15283 5.18804 5.24976 5.26934 5.38608 5.40735 5.47285 5.49395 5.63874 5.68873 5.81038 5.95971 6.06671 6.21015 6.40144 6.56047 6.98695 7.47672 8.94779 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.005414 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.194578 B = 5170.559212 C = 6275.606700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.211 3.789 4 H 0.000 1.000 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.516 5.516 14 C 0.041 3.959 15 C -0.111 4.111 16 C -0.045 4.045 17 H 0.098 0.902 18 C -0.042 4.042 19 C -0.134 4.134 20 C -0.089 4.089 21 C -0.159 4.159 22 C 0.083 3.917 23 F -0.147 7.147 24 C -0.153 4.153 25 C 0.048 3.952 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.062 0.938 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 9.021 12.399 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.103 3.897 4 H 0.018 0.982 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.149 4.149 16 C -0.064 4.064 17 H 0.117 0.883 18 C -0.042 4.042 19 C -0.152 4.152 20 C -0.107 4.107 21 C -0.177 4.177 22 C 0.064 3.936 23 F -0.126 7.126 24 C -0.172 4.172 25 C -0.080 4.080 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.080 0.920 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.079 8.951 12.231 15.157 hybrid contribution 1.813 -0.093 -0.677 1.937 sum 1.734 8.857 11.554 14.662 Atomic orbital electron populations 1.21568 0.96364 0.99564 1.00771 1.21427 0.94393 0.98183 1.00382 1.19161 0.91873 0.91332 0.87318 0.98203 1.21925 0.93624 1.36702 1.05893 0.92503 1.25599 1.01687 0.95096 0.95509 1.70008 1.36351 1.38602 1.10275 0.85807 0.81768 0.78564 0.77068 1.20392 1.21384 1.19146 1.65043 1.54334 1.01752 1.02815 1.22717 0.98406 0.96896 0.90762 1.22472 1.01653 0.92702 0.98112 1.21042 0.97953 0.92768 0.94682 0.88333 1.19663 0.94205 0.94280 0.96086 1.21259 0.93236 1.00167 1.00518 1.21236 1.00938 0.92075 0.96411 1.21348 0.93981 0.99940 1.02451 1.17833 0.93584 0.82883 0.99299 1.91472 1.90662 1.47401 1.83029 1.21153 1.00706 0.93009 1.02322 1.23185 0.98906 0.91055 0.94887 0.93705 0.92467 0.94921 0.92102 0.94979 0.93095 0.94560 0.91401 0.91564 0.89440 0.86431 0.83066 0.82793 0.83542 0.91989 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.71 71.98 0.70 -4.27 16 2 C -0.11 -4.95 5.07 30.59 0.16 -4.79 16 3 C 0.21 10.29 1.88 44.17 0.08 10.37 16 4 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 5 C -0.54 -28.09 6.34 25.60 0.16 -27.93 16 6 H 0.06 2.89 6.05 -2.91 -0.02 2.88 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -51.48 11.30 21.45 0.24 -51.24 16 9 Si 0.94 42.28 29.54 68.60 2.03 44.30 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.52 -20.90 4.78 -861.72 -4.12 -25.02 16 14 C 0.04 1.46 5.00 86.44 0.43 1.89 16 15 C -0.11 -3.17 6.39 31.47 0.20 -2.97 16 16 C -0.05 -1.30 3.27 -10.34 -0.03 -1.34 16 17 H 0.10 2.55 7.95 -2.39 -0.02 2.53 16 18 C -0.04 -1.11 4.94 -19.87 -0.10 -1.21 16 19 C -0.13 -3.61 8.12 22.27 0.18 -3.43 16 20 C -0.09 -1.99 10.04 22.26 0.22 -1.76 16 21 C -0.16 -3.37 10.03 22.31 0.22 -3.14 16 22 C 0.08 1.98 7.30 22.37 0.16 2.14 16 23 F -0.15 -3.56 17.27 44.97 0.78 -2.78 16 24 C -0.15 -3.70 9.66 22.31 0.22 -3.49 16 25 C 0.05 1.77 5.75 86.61 0.50 2.27 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 2.11 7.85 -2.38 -0.02 2.10 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 3.25 6.00 -2.39 -0.01 3.24 16 30 H 0.03 1.47 6.97 -2.39 -0.02 1.45 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.04 1.50 6.08 -2.39 -0.01 1.49 16 33 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 34 H 0.07 1.86 6.89 -2.39 -0.02 1.84 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.12 3.54 7.28 -2.91 -0.02 3.52 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.15 3.04 7.98 -2.91 -0.02 3.02 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.04 1.79 4.96 -2.39 -0.01 1.78 16 Total: -1.00 -57.29 324.28 3.50 -53.79 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.01 Total: 17.06 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.56 Total: -36.10 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -3.87 Total: -76.26 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -57.29 3.50 -53.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.114 kcal (2) G-P(sol) polarization free energy of solvation -57.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds