Wall clock time and date at job start Mon Mar 30 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 H 1.09004 * 109.47102 * 303.52058 * 3 2 1 5 5 C 1.50697 * 109.47177 * 183.52144 * 3 2 1 6 6 H 1.08005 * 120.00109 * 239.99961 * 5 3 2 7 7 C 1.37879 * 120.00288 * 59.99899 * 5 3 2 8 8 N 1.31520 * 119.99489 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00421 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47394 * 59.99419 * 9 7 5 11 11 H 1.48498 * 109.47466 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99921 * 9 7 5 13 13 N 1.46900 * 109.46946 * 63.52058 * 3 2 1 14 14 C 1.47453 * 110.99665 * 183.45047 * 13 3 2 15 15 C 1.54313 * 107.36916 * 236.66116 * 14 13 3 16 16 C 1.55398 * 102.90094 * 337.89546 * 15 14 13 17 17 H 1.08995 * 110.87248 * 277.39247 * 16 15 14 18 18 C 1.50703 * 111.05887 * 153.65018 * 16 15 14 19 19 C 1.38245 * 119.97423 * 307.31813 * 18 16 15 20 20 C 1.38196 * 120.02520 * 179.72742 * 19 18 16 21 21 C 1.38462 * 119.97333 * 0.56470 * 20 19 18 22 22 F 1.35104 * 120.02782 * 179.68632 * 21 20 19 23 23 C 1.38466 * 119.94781 * 359.70110 * 21 20 19 24 24 C 1.38195 * 119.97525 * 0.02562 * 23 21 20 25 25 C 1.47843 * 111.00292 * 62.61142 * 13 3 2 26 26 H 1.09010 * 109.47430 * 294.76754 * 1 2 3 27 27 H 1.09001 * 109.47361 * 54.76552 * 1 2 3 28 28 H 1.08999 * 109.47445 * 174.76522 * 1 2 3 29 29 H 1.08994 * 109.47010 * 239.99609 * 2 1 3 30 30 H 1.09006 * 109.46765 * 119.99736 * 2 1 3 31 31 H 0.96998 * 119.99439 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.88781 * 356.15123 * 14 13 3 33 33 H 1.09003 * 109.88808 * 117.17498 * 14 13 3 34 34 H 1.09000 * 110.70792 * 96.17791 * 15 14 13 35 35 H 1.09004 * 110.70875 * 219.41452 * 15 14 13 36 36 H 1.07997 * 119.98736 * 359.97085 * 19 18 16 37 37 H 1.07994 * 120.01352 * 180.28915 * 20 19 18 38 38 H 1.07998 * 120.01091 * 180.02562 * 23 21 20 39 39 H 1.07993 * 119.98607 * 179.97438 * 24 23 21 40 40 H 1.08998 * 110.37118 * 265.19317 * 25 13 3 41 41 H 1.08996 * 110.37131 * 27.41615 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6260 1.9742 -0.8568 5 6 3.5444 1.4434 -0.0873 6 1 4.1308 1.8947 0.6995 7 6 4.1725 0.8680 -1.1715 8 7 3.4585 0.3180 -2.1294 9 14 6.0373 0.8685 -1.2794 10 1 6.6009 0.1438 -0.1122 11 1 6.4609 0.1933 -2.5323 12 1 6.5327 2.2684 -1.2791 13 7 1.6210 2.1100 1.2397 14 6 2.0248 3.5281 1.2387 15 6 2.8887 3.7620 2.4958 16 6 2.4580 2.6004 3.4338 17 1 1.5410 2.8513 3.9669 18 6 3.5603 2.2463 4.3985 19 6 4.8292 1.9683 3.9256 20 6 5.8422 1.6491 4.8098 21 6 5.5829 1.5963 6.1689 22 9 6.5709 1.2781 7.0338 23 6 4.3103 1.8695 6.6410 24 6 3.3002 2.1941 5.7554 25 6 2.2155 1.4521 2.4227 26 1 -0.3634 0.4306 0.9332 27 1 -0.3634 0.5929 -0.8394 28 1 -0.3634 -1.0233 -0.0938 29 1 1.8932 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.9003 -0.0864 -2.8923 32 1 2.6061 3.7475 0.3431 33 1 1.1410 4.1653 1.2722 34 1 3.9490 3.6885 2.2539 35 1 2.6610 4.7285 2.9455 36 1 5.0299 2.0045 2.8651 37 1 6.8345 1.4365 4.4405 38 1 4.1070 1.8291 7.7009 39 1 2.3075 2.4069 6.1233 40 1 1.5226 0.7205 2.8383 41 1 3.1577 0.9730 2.1569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:32 Heat of formation + Delta-G solvation = -28.153219 kcal Electronic energy + Delta-G solvation = -22003.420700 eV Core-core repulsion = 18796.954333 eV Total energy + Delta-G solvation = -3206.466367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.83006 -39.62194 -37.84873 -34.32205 -31.93844 -31.14105 -31.02523 -28.73330 -27.56503 -26.10156 -23.30874 -22.99884 -22.34130 -20.69076 -19.86101 -18.92959 -17.63738 -16.50167 -16.27049 -15.79254 -15.52651 -14.84704 -14.74427 -14.21065 -13.48928 -13.46421 -13.23875 -13.16118 -12.88602 -12.53576 -12.48489 -12.28561 -11.86371 -11.43377 -11.17982 -10.99598 -10.94091 -10.77211 -10.70525 -10.61189 -10.49042 -10.08516 -10.02177 -9.65682 -9.47168 -9.05071 -9.00224 -8.40540 -8.35124 -7.16175 -6.02043 -4.15208 1.22682 1.31327 3.23541 3.29606 3.31428 3.66049 4.32627 4.35167 4.72898 4.84240 4.93848 5.18887 5.22904 5.28947 5.39513 5.46771 5.51421 5.67287 5.93661 6.04250 6.07548 6.15904 6.20797 6.29506 6.35500 6.39310 6.45729 6.53559 6.63806 6.68607 6.73238 6.79077 6.93049 6.98852 7.07453 7.18207 7.32256 7.59756 7.73091 7.96218 8.13784 8.27209 8.43120 8.94763 9.51613 10.97222 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.006055 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.413910 B = 4623.257103 C = 5643.745748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.208 3.792 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.049 3.951 15 C -0.127 4.127 16 C -0.064 4.064 17 H 0.083 0.917 18 C -0.068 4.068 19 C -0.081 4.081 20 C -0.151 4.151 21 C 0.083 3.917 22 F -0.147 7.147 23 C -0.155 4.155 24 C -0.092 4.092 25 C 0.058 3.942 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 3.800 12.587 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.102 3.898 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.710 3.290 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.251 5.251 14 C -0.079 4.079 15 C -0.165 4.165 16 C -0.083 4.083 17 H 0.101 0.899 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.170 4.170 21 C 0.063 3.937 22 F -0.125 7.125 23 C -0.174 4.174 24 C -0.110 4.110 25 C -0.070 4.070 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.767 3.645 12.425 12.971 hybrid contribution 2.248 -0.119 -0.031 2.251 sum 1.481 3.526 12.394 12.970 Atomic orbital electron populations 1.21698 0.98865 0.98338 1.00516 1.21581 0.92220 0.99207 1.01932 1.19468 0.92785 0.91115 0.86471 0.94383 1.21694 0.92590 1.37801 1.05951 0.92578 1.24907 0.97680 0.95073 0.95675 1.69861 1.34966 1.37691 1.09650 0.86820 0.86439 0.78236 0.77536 1.20258 1.21218 1.20323 1.63936 1.56178 1.01011 1.03944 1.22606 0.96733 0.91493 0.97084 1.22895 1.00605 0.97008 0.96019 1.21424 0.95156 0.97195 0.94574 0.89894 1.19956 0.94901 0.98126 0.93841 1.21094 0.91808 0.96533 1.00456 1.21157 1.01042 1.03375 0.91388 1.17710 0.85638 1.02901 0.87401 1.91468 1.60929 1.90620 1.69516 1.21049 0.91834 1.03795 1.00740 1.20919 0.98779 0.99009 0.92326 1.23006 0.99555 0.94881 0.89596 0.93607 0.94159 0.95656 0.89042 0.95042 0.92815 0.91722 0.92687 0.91384 0.92013 0.84386 0.85015 0.85178 0.85208 0.92147 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.72 37.16 0.36 -2.38 16 2 C -0.11 -2.56 5.12 -26.73 -0.14 -2.70 16 3 C 0.21 4.91 1.61 -68.87 -0.11 4.80 16 4 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.54 -13.59 6.34 -34.44 -0.22 -13.80 16 6 H 0.06 1.38 6.31 -52.48 -0.33 1.05 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 8 N -0.88 -24.14 11.30 55.43 0.63 -23.52 16 9 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.53 -10.56 4.67 -224.68 -1.05 -11.61 16 14 C 0.05 0.90 6.26 -2.83 -0.02 0.88 16 15 C -0.13 -1.97 6.25 -24.77 -0.15 -2.13 16 16 C -0.06 -0.97 3.25 -89.49 -0.29 -1.26 16 17 H 0.08 1.14 7.96 -51.93 -0.41 0.73 16 18 C -0.07 -0.96 5.00 -104.61 -0.52 -1.48 16 19 C -0.08 -1.21 8.30 -39.59 -0.33 -1.54 16 20 C -0.15 -2.12 10.03 -39.51 -0.40 -2.51 16 21 C 0.08 1.13 7.30 -39.41 -0.29 0.84 16 22 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 23 C -0.16 -1.89 10.03 -39.51 -0.40 -2.28 16 24 C -0.09 -1.13 9.68 -39.59 -0.38 -1.52 16 25 C 0.06 1.06 4.46 -2.30 -0.01 1.05 16 26 H 0.04 0.88 7.86 -51.92 -0.41 0.47 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 2.37 5.98 -51.93 -0.31 2.06 16 30 H 0.03 0.72 7.12 -51.93 -0.37 0.35 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.06 1.32 6.99 -51.93 -0.36 0.95 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.12 6.64 -51.93 -0.34 0.77 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.14 2.24 6.82 -52.49 -0.36 1.89 16 37 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.30 7.99 -52.49 -0.42 0.88 16 40 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 41 H 0.07 1.42 5.08 -51.93 -0.26 1.16 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -26.24 324.75 -9.60 -35.83 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.10 Total: 3.39 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.99 Total: -22.33 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.42 Total: -35.13 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.24 -9.60 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.678 kcal (2) G-P(sol) polarization free energy of solvation -26.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds