Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 H 1.09004 * 109.47102 * 303.52058 * 3 2 1 5 5 C 1.50697 * 109.47177 * 183.52144 * 3 2 1 6 6 H 1.08005 * 120.00109 * 239.99961 * 5 3 2 7 7 C 1.37879 * 120.00288 * 59.99899 * 5 3 2 8 8 N 1.31520 * 119.99489 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00421 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47394 * 59.99419 * 9 7 5 11 11 H 1.48498 * 109.47466 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99921 * 9 7 5 13 13 N 1.46900 * 109.46946 * 63.52058 * 3 2 1 14 14 C 1.47453 * 110.99665 * 183.45047 * 13 3 2 15 15 C 1.54313 * 107.36916 * 236.66116 * 14 13 3 16 16 C 1.55398 * 102.90094 * 337.89546 * 15 14 13 17 17 H 1.08995 * 110.87248 * 277.39247 * 16 15 14 18 18 C 1.50703 * 111.05887 * 153.65018 * 16 15 14 19 19 C 1.38245 * 119.97423 * 307.31813 * 18 16 15 20 20 C 1.38196 * 120.02520 * 179.72742 * 19 18 16 21 21 C 1.38462 * 119.97333 * 0.56470 * 20 19 18 22 22 F 1.35104 * 120.02782 * 179.68632 * 21 20 19 23 23 C 1.38466 * 119.94781 * 359.70110 * 21 20 19 24 24 C 1.38195 * 119.97525 * 0.02562 * 23 21 20 25 25 C 1.47843 * 111.00292 * 62.61142 * 13 3 2 26 26 H 1.09010 * 109.47430 * 294.76754 * 1 2 3 27 27 H 1.09001 * 109.47361 * 54.76552 * 1 2 3 28 28 H 1.08999 * 109.47445 * 174.76522 * 1 2 3 29 29 H 1.08994 * 109.47010 * 239.99609 * 2 1 3 30 30 H 1.09006 * 109.46765 * 119.99736 * 2 1 3 31 31 H 0.96998 * 119.99439 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.88781 * 356.15123 * 14 13 3 33 33 H 1.09003 * 109.88808 * 117.17498 * 14 13 3 34 34 H 1.09000 * 110.70792 * 96.17791 * 15 14 13 35 35 H 1.09004 * 110.70875 * 219.41452 * 15 14 13 36 36 H 1.07997 * 119.98736 * 359.97085 * 19 18 16 37 37 H 1.07994 * 120.01352 * 180.28915 * 20 19 18 38 38 H 1.07998 * 120.01091 * 180.02562 * 23 21 20 39 39 H 1.07993 * 119.98607 * 179.97438 * 24 23 21 40 40 H 1.08998 * 110.37118 * 265.19317 * 25 13 3 41 41 H 1.08996 * 110.37131 * 27.41615 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6260 1.9742 -0.8568 5 6 3.5444 1.4434 -0.0873 6 1 4.1308 1.8947 0.6995 7 6 4.1725 0.8680 -1.1715 8 7 3.4585 0.3180 -2.1294 9 14 6.0373 0.8685 -1.2794 10 1 6.6009 0.1438 -0.1122 11 1 6.4609 0.1933 -2.5323 12 1 6.5327 2.2684 -1.2791 13 7 1.6210 2.1100 1.2397 14 6 2.0248 3.5281 1.2387 15 6 2.8887 3.7620 2.4958 16 6 2.4580 2.6004 3.4338 17 1 1.5410 2.8513 3.9669 18 6 3.5603 2.2463 4.3985 19 6 4.8292 1.9683 3.9256 20 6 5.8422 1.6491 4.8098 21 6 5.5829 1.5963 6.1689 22 9 6.5709 1.2781 7.0338 23 6 4.3103 1.8695 6.6410 24 6 3.3002 2.1941 5.7554 25 6 2.2155 1.4521 2.4227 26 1 -0.3634 0.4306 0.9332 27 1 -0.3634 0.5929 -0.8394 28 1 -0.3634 -1.0233 -0.0938 29 1 1.8932 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.9003 -0.0864 -2.8923 32 1 2.6061 3.7475 0.3431 33 1 1.1410 4.1653 1.2722 34 1 3.9490 3.6885 2.2539 35 1 2.6610 4.7285 2.9455 36 1 5.0299 2.0045 2.8651 37 1 6.8345 1.4365 4.4405 38 1 4.1070 1.8291 7.7009 39 1 2.3075 2.4069 6.1233 40 1 1.5226 0.7205 2.8383 41 1 3.1577 0.9730 2.1569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -40.655525 kcal Electronic energy + Delta-G solvation = -22003.962841 eV Core-core repulsion = 18796.954333 eV Total energy + Delta-G solvation = -3207.008508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.88549 -40.86137 -39.21720 -35.98784 -33.74609 -32.56311 -32.07986 -30.20118 -28.98336 -27.86084 -24.92369 -24.24150 -23.55579 -22.22681 -21.10674 -20.68591 -18.71093 -18.33477 -17.45715 -17.22817 -16.58089 -16.44049 -16.12109 -15.58224 -15.07565 -14.71306 -14.62020 -14.43750 -14.36008 -14.01061 -13.84223 -13.57575 -13.40554 -13.06721 -12.88421 -12.75937 -12.48621 -12.24205 -12.09788 -11.97969 -11.96347 -11.78140 -11.51141 -11.43632 -11.22029 -10.84924 -10.41267 -10.04282 -9.46566 -8.86964 -8.00757 -6.21622 0.16521 0.29810 1.36222 1.38072 1.43432 2.39623 2.60858 3.17704 3.29244 3.46401 3.75995 3.88564 3.98547 4.05444 4.11852 4.34578 4.38874 4.45406 4.60521 4.70022 4.74497 4.80842 4.93594 4.96452 5.05947 5.06241 5.13191 5.16153 5.17915 5.26458 5.28902 5.32605 5.41538 5.48535 5.54350 5.66000 5.72444 5.81942 5.95813 6.08480 6.23308 6.44929 6.65290 6.99992 7.47971 8.94100 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.006055 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.413910 B = 4623.257103 C = 5643.745748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.046 3.954 15 C -0.120 4.120 16 C -0.049 4.049 17 H 0.109 0.891 18 C -0.077 4.077 19 C -0.096 4.096 20 C -0.161 4.161 21 C 0.073 3.927 22 F -0.149 7.149 23 C -0.147 4.147 24 C -0.081 4.081 25 C 0.057 3.943 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.065 0.935 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 4.502 15.389 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.762 3.238 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.250 5.250 14 C -0.082 4.082 15 C -0.158 4.158 16 C -0.068 4.068 17 H 0.127 0.873 18 C -0.078 4.078 19 C -0.115 4.115 20 C -0.180 4.180 21 C 0.054 3.946 22 F -0.128 7.128 23 C -0.165 4.165 24 C -0.099 4.099 25 C -0.071 4.071 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.083 0.917 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.429 4.357 15.241 15.916 hybrid contribution 2.447 -0.321 -0.865 2.615 sum 1.018 4.036 14.377 14.967 Atomic orbital electron populations 1.21559 0.96292 0.99518 1.00824 1.21423 0.94481 0.98378 1.00156 1.19203 0.91705 0.91280 0.87004 0.98114 1.21967 0.93729 1.36668 1.05518 0.92583 1.25567 1.01270 0.95265 0.95707 1.69996 1.36213 1.38826 1.10135 0.85957 0.82251 0.78228 0.77346 1.19842 1.21301 1.19931 1.63884 1.56162 1.01872 1.03064 1.22663 0.97671 0.90628 0.97250 1.22835 0.99122 0.98916 0.94950 1.21318 0.96548 0.95001 0.93909 0.87291 1.19922 0.94027 0.99033 0.94772 1.20965 0.92926 0.98075 0.99496 1.21215 1.01139 1.03748 0.91895 1.17890 0.86381 1.03192 0.87105 1.91462 1.61230 1.90689 1.69437 1.21386 0.90789 1.02061 1.02305 1.21220 1.00222 0.97370 0.91089 1.22974 0.98057 0.96155 0.89875 0.92365 0.94849 0.93835 0.92174 0.95313 0.93122 0.94825 0.90731 0.92902 0.89007 0.86725 0.84708 0.82247 0.81947 0.91667 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.72 71.98 0.70 -4.23 16 2 C -0.11 -4.99 5.12 30.59 0.16 -4.83 16 3 C 0.22 10.47 1.61 44.17 0.07 10.54 16 4 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 5 C -0.54 -27.99 6.34 25.60 0.16 -27.83 16 6 H 0.06 2.85 6.31 -2.91 -0.02 2.84 16 7 C 0.02 1.16 5.30 84.65 0.45 1.61 16 8 N -0.91 -51.67 11.30 21.45 0.24 -51.43 16 9 Si 0.94 42.87 29.54 68.60 2.03 44.90 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.53 -21.00 4.67 -864.74 -4.04 -25.03 16 14 C 0.05 1.65 6.26 86.64 0.54 2.20 16 15 C -0.12 -3.53 6.25 31.86 0.20 -3.33 16 16 C -0.05 -1.35 3.25 -10.06 -0.03 -1.38 16 17 H 0.11 2.49 7.96 -2.39 -0.02 2.48 16 18 C -0.08 -2.00 5.00 -19.86 -0.10 -2.10 16 19 C -0.10 -2.85 8.30 22.26 0.18 -2.66 16 20 C -0.16 -4.40 10.03 22.31 0.22 -4.18 16 21 C 0.07 1.84 7.30 22.38 0.16 2.01 16 22 F -0.15 -3.86 17.27 44.97 0.78 -3.08 16 23 C -0.15 -3.01 10.03 22.31 0.22 -2.79 16 24 C -0.08 -1.66 9.68 22.26 0.22 -1.44 16 25 C 0.06 2.05 4.46 86.77 0.39 2.44 16 26 H 0.06 2.14 7.86 -2.38 -0.02 2.12 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 3.23 5.98 -2.39 -0.01 3.21 16 30 H 0.03 1.33 7.12 -2.38 -0.02 1.31 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.03 1.40 6.99 -2.38 -0.02 1.38 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.72 6.64 -2.39 -0.02 1.70 16 35 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.11 3.87 6.82 -2.91 -0.02 3.85 16 37 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.16 2.28 7.99 -2.91 -0.02 2.26 16 40 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 41 H 0.04 1.69 5.08 -2.39 -0.01 1.67 16 Total: -1.00 -58.15 324.75 3.57 -54.58 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.01 Total: 16.04 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.55 Total: -35.98 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.79 Total: -76.46 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -58.15 3.57 -54.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.929 kcal (2) G-P(sol) polarization free energy of solvation -58.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds