Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46921 * 2 1 4 4 H 1.08991 * 109.47338 * 305.00019 * 3 2 1 5 5 C 1.50698 * 109.46967 * 184.99782 * 3 2 1 6 6 H 1.08004 * 120.00169 * 240.00668 * 5 3 2 7 7 C 1.37878 * 119.99983 * 60.00094 * 5 3 2 8 8 N 1.31513 * 120.00028 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99987 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46858 * 60.00543 * 9 7 5 11 11 H 1.48505 * 109.47172 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47328 * 300.00442 * 9 7 5 13 13 N 1.46900 * 109.47060 * 65.00274 * 3 2 1 14 14 C 1.47446 * 111.00255 * 69.87065 * 13 3 2 15 15 C 1.54316 * 107.23320 * 123.25926 * 14 13 3 16 16 C 1.55139 * 103.01810 * 22.28197 * 15 14 13 17 17 H 1.09002 * 110.99125 * 82.47994 * 16 15 14 18 18 C 1.50701 * 110.98859 * 206.25316 * 16 15 14 19 19 C 1.38243 * 119.97324 * 58.27566 * 18 16 15 20 20 C 1.38204 * 120.02394 * 179.76462 * 19 18 16 21 21 C 1.38463 * 119.97234 * 0.50790 * 20 19 18 22 22 F 1.35102 * 120.02205 * 179.76903 * 21 20 19 23 23 C 1.38460 * 119.95030 * 359.74537 * 21 20 19 24 24 C 1.38198 * 119.97364 * 359.97438 * 23 21 20 25 25 C 1.47843 * 110.99888 * 190.71516 * 13 3 2 26 26 H 1.08997 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47164 * 299.99936 * 1 2 3 28 28 H 1.09004 * 109.47124 * 59.99768 * 1 2 3 29 29 H 1.08995 * 109.47164 * 240.00064 * 2 1 3 30 30 H 1.08992 * 109.47244 * 119.99758 * 2 1 3 31 31 H 0.96997 * 119.99870 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.88511 * 242.66682 * 14 13 3 33 33 H 1.08995 * 109.88851 * 3.68984 * 14 13 3 34 34 H 1.08999 * 110.70589 * 140.66668 * 15 14 13 35 35 H 1.08996 * 110.70709 * 263.73004 * 15 14 13 36 36 H 1.07999 * 119.98816 * 0.02562 * 19 18 16 37 37 H 1.08001 * 120.00926 * 180.25430 * 20 19 18 38 38 H 1.07998 * 120.01081 * 179.97438 * 23 21 20 39 39 H 1.08000 * 119.98679 * 180.02562 * 24 23 21 40 40 H 1.08998 * 110.37465 * 332.46027 * 25 13 3 41 41 H 1.09003 * 110.37404 * 94.80784 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3979 0.2168 -2.6502 12 1 6.4995 2.2815 -1.3819 13 7 1.6514 2.0993 1.2553 14 6 2.4042 1.5463 2.3961 15 6 3.1299 2.7244 3.0792 16 6 2.2964 3.9544 2.6327 17 1 1.4148 4.0779 3.2617 18 6 3.1368 5.2053 2.6345 19 6 4.2807 5.2700 1.8609 20 6 5.0495 6.4185 1.8580 21 6 4.6794 7.5007 2.6384 22 9 5.4328 8.6221 2.6399 23 6 3.5364 7.4328 3.4169 24 6 2.7660 6.2854 3.4137 25 6 1.8982 3.5555 1.1898 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0609 -2.9498 32 1 1.7179 1.0752 3.0998 33 1 3.1309 0.8154 2.0415 34 1 3.1056 2.6155 4.1635 35 1 4.1574 2.8024 2.7240 36 1 4.5713 4.4243 1.2553 37 1 5.9409 6.4703 1.2504 38 1 3.2470 8.2761 4.0263 39 1 1.8741 6.2324 4.0205 40 1 2.7123 3.7717 0.4980 41 1 0.9923 4.0807 0.8873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -27.778463 kcal Electronic energy + Delta-G solvation = -21872.936009 eV Core-core repulsion = 18666.485892 eV Total energy + Delta-G solvation = -3206.450117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.84182 -39.62621 -37.86160 -34.36352 -31.94727 -31.09474 -30.89866 -29.00578 -27.50305 -26.04723 -23.34004 -22.96911 -22.14585 -21.05494 -19.79043 -18.75516 -17.63654 -16.66848 -16.23053 -15.78789 -15.53798 -14.90520 -14.61186 -14.23376 -13.72312 -13.46096 -13.27256 -12.98454 -12.70665 -12.62606 -12.48825 -12.35212 -11.79915 -11.48971 -11.20884 -11.02048 -10.93343 -10.79144 -10.68993 -10.56360 -10.44571 -10.09799 -10.00835 -9.62216 -9.49610 -9.06577 -9.00915 -8.40468 -8.35854 -7.16351 -6.02261 -4.15075 1.21333 1.30130 3.23599 3.29916 3.31722 3.64766 4.31522 4.35220 4.71697 4.83167 4.92801 5.21580 5.22985 5.25304 5.38824 5.45202 5.51684 5.67671 5.92954 6.04145 6.08020 6.15099 6.20559 6.29175 6.35337 6.38664 6.48672 6.50541 6.62656 6.68733 6.75738 6.82707 6.91233 6.97795 7.09821 7.17740 7.36374 7.59559 7.73198 7.97453 8.12292 8.27580 8.44634 8.95140 9.51718 10.97292 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.005663 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.008503 B = 4943.266674 C = 6121.998476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.208 3.792 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.047 3.953 15 C -0.127 4.127 16 C -0.062 4.062 17 H 0.084 0.916 18 C -0.069 4.069 19 C -0.081 4.081 20 C -0.151 4.151 21 C 0.083 3.917 22 F -0.147 7.147 23 C -0.156 4.156 24 C -0.092 4.092 25 C 0.057 3.943 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 8.827 9.638 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.251 5.251 14 C -0.081 4.081 15 C -0.166 4.166 16 C -0.081 4.081 17 H 0.102 0.898 18 C -0.069 4.069 19 C -0.099 4.099 20 C -0.169 4.169 21 C 0.064 3.936 22 F -0.125 7.125 23 C -0.174 4.174 24 C -0.110 4.110 25 C -0.071 4.071 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.345 8.657 9.497 12.921 hybrid contribution 2.158 0.361 -0.344 2.215 sum 0.814 9.018 9.153 12.875 Atomic orbital electron populations 1.21707 0.98936 0.98378 1.00521 1.21554 0.92220 0.99117 1.01782 1.19434 0.93051 0.91311 0.86092 0.94599 1.21723 0.92635 1.38302 1.05429 0.92444 1.24914 0.97606 0.95101 0.95740 1.69861 1.34843 1.38059 1.09383 0.86807 0.86401 0.78254 0.77462 1.20317 1.21239 1.20338 1.63898 1.54019 1.01647 1.05500 1.22695 0.95958 0.96630 0.92845 1.22865 0.99369 0.94654 0.99690 1.21346 0.96777 0.90952 0.99025 0.89794 1.19961 0.95428 0.95580 0.95959 1.21119 0.93625 0.97487 0.97680 1.21166 1.01949 0.93054 1.00777 1.17716 0.91993 0.83526 1.00413 1.91468 1.75371 1.50116 1.95575 1.21049 0.95146 0.99906 1.01347 1.20921 0.99369 0.92018 0.98730 1.22967 0.99904 0.90517 0.93700 0.95663 0.93350 0.94334 0.89075 0.95067 0.92816 0.92965 0.90608 0.92115 0.91452 0.84227 0.84982 0.85183 0.85220 0.92178 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.80 37.16 0.36 -2.41 16 2 C -0.11 -2.50 5.21 -26.73 -0.14 -2.64 16 3 C 0.21 4.89 1.62 -68.86 -0.11 4.78 16 4 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 5 C -0.54 -13.58 6.24 -34.44 -0.22 -13.79 16 6 H 0.06 1.41 6.22 -52.48 -0.33 1.09 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.48 16 9 Si 0.88 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.53 -10.55 4.58 -224.69 -1.03 -11.58 16 14 C 0.05 0.87 5.33 -2.84 -0.02 0.85 16 15 C -0.13 -2.00 6.13 -24.91 -0.15 -2.15 16 16 C -0.06 -0.92 3.25 -89.64 -0.29 -1.21 16 17 H 0.08 1.15 7.96 -51.93 -0.41 0.73 16 18 C -0.07 -0.96 5.00 -104.62 -0.52 -1.48 16 19 C -0.08 -1.20 8.28 -39.59 -0.33 -1.53 16 20 C -0.15 -2.08 10.03 -39.51 -0.40 -2.47 16 21 C 0.08 1.11 7.30 -39.42 -0.29 0.82 16 22 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 23 C -0.16 -1.86 10.03 -39.51 -0.40 -2.26 16 24 C -0.09 -1.11 9.68 -39.59 -0.38 -1.50 16 25 C 0.06 1.04 5.88 -2.30 -0.01 1.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 30 H 0.03 0.71 7.04 -51.93 -0.37 0.34 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.58 5.67 -51.93 -0.29 1.29 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.12 6.68 -51.93 -0.35 0.77 16 36 H 0.14 2.25 7.01 -52.49 -0.37 1.88 16 37 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.27 7.98 -52.49 -0.42 0.85 16 40 H 0.06 1.21 5.71 -51.93 -0.30 0.91 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -26.18 324.27 -9.54 -35.71 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.06 Total: 3.36 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.98 Total: -22.26 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.40 Total: -35.06 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.18 -9.54 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.934 kcal (2) G-P(sol) polarization free energy of solvation -26.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds