Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47020 * 2 1 4 4 H 1.09006 * 109.46843 * 55.90269 * 3 2 1 5 5 C 1.50701 * 109.47401 * 175.89903 * 3 2 1 6 6 H 1.08001 * 120.00002 * 116.59548 * 5 3 2 7 7 C 1.37877 * 120.00116 * 296.59965 * 5 3 2 8 8 N 1.31515 * 120.00007 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99912 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46746 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47012 * 299.99819 * 9 7 5 12 12 H 1.48501 * 109.47027 * 59.99946 * 9 7 5 13 13 N 1.46896 * 109.47372 * 295.90459 * 3 2 1 14 14 C 1.47898 * 110.99938 * 301.29156 * 13 3 2 15 15 C 1.53994 * 107.05858 * 214.15466 * 14 13 3 16 16 C 1.54589 * 105.14047 * 1.22598 * 15 14 13 17 17 H 1.09001 * 110.72309 * 263.59664 * 16 15 14 18 18 C 1.50697 * 110.72778 * 140.49160 * 16 15 14 19 19 C 1.38246 * 119.97341 * 301.18323 * 18 16 15 20 20 C 1.38199 * 120.02566 * 179.72100 * 19 18 16 21 21 C 1.38466 * 119.97497 * 0.57044 * 20 19 18 22 22 F 1.35093 * 120.02743 * 179.68204 * 21 20 19 23 23 C 1.38458 * 119.94579 * 359.70123 * 21 20 19 24 24 C 1.38197 * 119.97758 * 0.02562 * 23 21 20 25 25 C 1.48534 * 111.00059 * 183.89514 * 13 3 2 26 26 H 1.09005 * 109.46786 * 175.22318 * 1 2 3 27 27 H 1.09002 * 109.46963 * 295.22054 * 1 2 3 28 28 H 1.08998 * 109.47638 * 55.22574 * 1 2 3 29 29 H 1.09002 * 109.47462 * 240.00410 * 2 1 3 30 30 H 1.09001 * 109.47366 * 119.99988 * 2 1 3 31 31 H 0.96998 * 119.99769 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.91831 * 333.51033 * 14 13 3 33 33 H 1.08996 * 109.91961 * 94.60286 * 14 13 3 34 34 H 1.09002 * 110.30852 * 120.14177 * 15 14 13 35 35 H 1.09003 * 110.31206 * 242.20556 * 15 14 13 36 36 H 1.08001 * 119.98760 * 359.97438 * 19 18 16 37 37 H 1.07997 * 120.01979 * 180.29448 * 20 19 18 38 38 H 1.08002 * 120.01463 * 180.02562 * 23 21 20 39 39 H 1.07999 * 119.99289 * 180.02562 * 24 23 21 40 40 H 1.09003 * 110.66670 * 278.15006 * 25 13 3 41 41 H 1.09001 * 110.66663 * 41.28656 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6178 1.9771 0.8511 5 6 3.5435 1.4438 0.1016 6 1 4.1390 1.8430 -0.7062 7 6 4.1590 0.9354 1.2258 8 7 3.4339 0.4497 2.2096 9 14 6.0228 0.9364 1.3513 10 1 6.4317 0.3406 2.6486 11 1 6.5944 0.1380 0.2373 12 1 6.5237 2.3319 1.2682 13 7 1.6327 2.1059 -1.2458 14 6 2.1626 1.3888 -2.4258 15 6 2.4782 2.4507 -3.4955 16 6 2.1253 3.8042 -2.8374 17 1 1.1219 4.1213 -3.1216 18 6 3.1392 4.8566 -3.2052 19 6 4.4730 4.6696 -2.8933 20 6 5.4046 5.6314 -3.2353 21 6 5.0000 6.7881 -3.8800 22 9 5.9088 7.7319 -4.2090 23 6 3.6631 6.9768 -4.1868 24 6 2.7341 6.0111 -3.8489 25 6 2.1898 3.4806 -1.3235 26 1 -0.3633 -1.0242 -0.0856 27 1 -0.3633 0.4379 0.9297 28 1 -0.3634 0.5861 -0.8441 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8669 0.0924 3.0006 32 1 3.0719 0.8515 -2.1564 33 1 1.4158 0.6894 -2.8016 34 1 3.5360 2.4215 -3.7570 35 1 1.8654 2.2882 -4.3822 36 1 4.7876 3.7696 -2.3859 37 1 6.4472 5.4830 -2.9959 38 1 3.3463 7.8784 -4.6900 39 1 1.6913 6.1579 -4.0885 40 1 1.5745 4.1777 -0.7546 41 1 3.2207 3.4985 -0.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -27.466678 kcal Electronic energy + Delta-G solvation = -21822.434840 eV Core-core repulsion = 18615.998244 eV Total energy + Delta-G solvation = -3206.436597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.85349 -39.63613 -37.85487 -34.41309 -31.98193 -31.11137 -30.88100 -29.16671 -27.34616 -26.05275 -23.41747 -22.97826 -22.11691 -21.15226 -19.77238 -18.73078 -17.63935 -16.63352 -16.27338 -15.76875 -15.54748 -14.95406 -14.64779 -14.24300 -13.68732 -13.47245 -13.37935 -12.94609 -12.91982 -12.52405 -12.42767 -12.34263 -11.90239 -11.48371 -11.17107 -11.03239 -10.94402 -10.83946 -10.65224 -10.56936 -10.46473 -10.05497 -9.99516 -9.69680 -9.52113 -9.12625 -9.04738 -8.40830 -8.36640 -7.21296 -6.03479 -4.15465 1.20442 1.28722 3.24134 3.30138 3.31900 3.63736 4.30462 4.35546 4.70670 4.82358 4.91518 5.20507 5.21411 5.30442 5.37108 5.45169 5.51085 5.63809 5.90079 6.04195 6.07697 6.14506 6.19486 6.27294 6.31050 6.36699 6.44390 6.51261 6.61861 6.65693 6.72336 6.83424 6.89182 6.96080 7.03788 7.16467 7.26336 7.57550 7.69811 7.91939 8.09999 8.20356 8.39254 8.94272 9.51127 10.97390 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.005594 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.724886 B = 5003.995806 C = 6265.835771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.204 3.796 4 H 0.042 0.958 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.883 3.117 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.515 5.515 14 C 0.039 3.961 15 C -0.120 4.120 16 C -0.058 4.058 17 H 0.083 0.917 18 C -0.069 4.069 19 C -0.082 4.082 20 C -0.151 4.151 21 C 0.083 3.917 22 F -0.146 7.146 23 C -0.155 4.155 24 C -0.092 4.092 25 C 0.049 3.951 26 H 0.025 0.975 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 7.818 -11.042 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.097 3.903 4 H 0.060 0.940 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.711 3.289 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.158 4.158 16 C -0.077 4.077 17 H 0.101 0.899 18 C -0.069 4.069 19 C -0.100 4.100 20 C -0.170 4.170 21 C 0.063 3.937 22 F -0.125 7.125 23 C -0.174 4.174 24 C -0.110 4.110 25 C -0.080 4.080 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.083 0.917 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.575 7.749 -10.840 13.417 hybrid contribution 2.227 0.113 0.183 2.237 sum 0.652 7.862 -10.657 13.259 Atomic orbital electron populations 1.21735 0.98777 0.98552 1.00719 1.21557 0.92350 0.99166 1.01588 1.19397 0.92981 0.91096 0.86799 0.94035 1.21626 0.92626 1.41016 1.02949 0.92549 1.24901 0.97689 0.94991 0.95702 1.69886 1.35007 1.40226 1.07005 0.86804 0.86379 0.78346 0.77394 1.21213 1.20316 1.20281 1.65127 1.53958 1.01193 1.03595 1.22720 0.99415 0.95970 0.90857 1.22512 1.00783 0.94108 0.98393 1.21145 0.96454 0.92564 0.97529 0.89869 1.20020 0.94479 0.95390 0.97058 1.21055 0.92242 0.98994 0.97676 1.21153 1.01126 0.93575 1.01107 1.17707 0.86778 0.87800 1.01367 1.91466 1.66635 1.63562 1.90853 1.21059 0.91491 1.01150 1.03684 1.20933 0.99389 0.92780 0.97884 1.23198 1.00426 0.92213 0.92125 0.95597 0.94187 0.93107 0.94877 0.89686 0.92798 0.92123 0.92243 0.91999 0.92052 0.84516 0.85004 0.85162 0.85168 0.91669 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.42 16 2 C -0.11 -2.48 5.10 -26.73 -0.14 -2.61 16 3 C 0.20 4.83 1.83 -68.87 -0.13 4.70 16 4 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 5 C -0.54 -13.75 6.30 -34.44 -0.22 -13.97 16 6 H 0.06 1.41 6.04 -52.49 -0.32 1.09 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.28 11.56 55.43 0.64 -23.64 16 9 Si 0.88 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.51 -10.33 4.67 -223.88 -1.05 -11.37 16 14 C 0.04 0.71 4.96 -2.76 -0.01 0.69 16 15 C -0.12 -1.80 6.42 -25.38 -0.16 -1.96 16 16 C -0.06 -0.85 3.27 -89.91 -0.29 -1.15 16 17 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 18 C -0.07 -0.95 4.94 -104.61 -0.52 -1.46 16 19 C -0.08 -1.17 8.16 -39.59 -0.32 -1.50 16 20 C -0.15 -2.03 10.03 -39.51 -0.40 -2.43 16 21 C 0.08 1.09 7.30 -39.42 -0.29 0.81 16 22 F -0.15 -1.98 17.27 2.25 0.04 -1.94 16 23 C -0.16 -1.83 10.03 -39.52 -0.40 -2.23 16 24 C -0.09 -1.10 9.68 -39.59 -0.38 -1.48 16 25 C 0.05 0.89 5.71 -1.90 -0.01 0.88 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.97 7.59 -51.93 -0.39 0.58 16 29 H 0.03 0.74 6.83 -51.93 -0.35 0.38 16 30 H 0.08 2.19 6.26 -51.93 -0.33 1.86 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.06 1.25 6.07 -51.93 -0.32 0.93 16 33 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.06 0.91 7.07 -51.93 -0.37 0.55 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.14 2.09 7.28 -52.49 -0.38 1.71 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.27 7.98 -52.49 -0.42 0.85 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.34 4.72 -51.93 -0.25 1.09 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -26.46 324.25 -9.54 -36.00 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.05 Total: 3.00 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.99 Total: -22.38 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.40 Total: -35.01 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.46 -9.54 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.532 kcal (2) G-P(sol) polarization free energy of solvation -26.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds