Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.47148 * 111.00041 * 189.20673 * 13 3 2 15 15 C 1.52983 * 108.57773 * 165.43155 * 14 13 3 16 16 C 1.50419 * 109.83859 * 50.07782 * 15 14 13 17 17 C 1.37602 * 121.95224 * 343.25096 * 16 15 14 18 18 N 1.32870 * 118.96224 * 180.42188 * 17 16 15 19 19 C 1.31681 * 121.05108 * 359.88573 * 18 17 16 20 20 N 1.31770 * 121.84716 * 359.97438 * 19 18 17 21 21 C 1.32798 * 120.57514 * 0.08362 * 20 19 18 22 22 O 1.35523 * 120.52066 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99737 * 359.97438 * 22 21 20 24 24 C 1.46704 * 110.99901 * 66.04690 * 13 3 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.62383 * 285.16056 * 14 13 3 32 32 H 1.09003 * 109.61684 * 45.70604 * 14 13 3 33 33 H 1.09002 * 109.41246 * 289.96792 * 15 14 13 34 34 H 1.08998 * 109.35446 * 170.15015 * 15 14 13 35 35 H 1.08006 * 119.08102 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47388 * 59.99867 * 23 22 21 37 37 H 1.08996 * 109.46784 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.46796 * 299.99998 * 23 22 21 39 39 H 1.08997 * 109.31745 * 296.23320 * 24 13 3 40 40 H 1.09003 * 109.31799 * 55.67286 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6515 2.0992 1.2553 14 6 1.9305 3.5431 1.2034 15 6 1.1894 4.2245 2.3552 16 6 1.4763 3.5040 3.6441 17 6 2.0024 2.2327 3.6661 18 7 2.2247 1.6486 4.8387 19 6 1.9518 2.2676 5.9684 20 7 1.4499 3.4858 5.9901 21 6 1.1996 4.1335 4.8582 22 8 0.6840 5.3866 4.8818 23 6 0.4296 5.9593 6.1661 24 6 2.3333 1.4879 2.4015 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 3.0022 3.7127 1.3065 32 1 1.5828 3.9490 0.2534 33 1 0.1173 4.2031 2.1593 34 1 1.5221 5.2592 2.4370 35 1 2.1446 1.7627 6.9035 36 1 1.3607 6.0151 6.7299 37 1 0.0189 6.9613 6.0421 38 1 -0.2853 5.3382 6.7057 39 1 2.0137 0.4505 2.4998 40 1 3.4105 1.5165 2.2374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = 13.252751 kcal Electronic energy + Delta-G solvation = -22215.712931 eV Core-core repulsion = 19030.962023 eV Total energy + Delta-G solvation = -3184.750908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24808 -38.61747 -37.69087 -34.41525 -33.04048 -32.03610 -30.91598 -29.55791 -27.84505 -26.69066 -24.99337 -24.07282 -22.67708 -22.48551 -20.19997 -19.19245 -18.20028 -17.70082 -16.46860 -16.24784 -15.21964 -15.07806 -14.79707 -14.51910 -14.15177 -14.11283 -13.61056 -13.26992 -12.89529 -12.59825 -12.42508 -12.10564 -11.79511 -11.59267 -11.51088 -11.29993 -11.18271 -10.97394 -10.86221 -10.67491 -10.25293 -10.00137 -9.76607 -9.67308 -9.51039 -9.19826 -9.05061 -8.60603 -8.40953 -7.28359 -6.04652 -4.18607 1.16508 1.32195 2.93015 3.25965 3.31409 3.34264 3.93840 4.17089 4.23877 4.35874 4.89737 4.94193 5.12445 5.15501 5.18823 5.24662 5.27595 5.44205 5.60852 5.93404 5.97138 6.19197 6.21095 6.33514 6.36056 6.45051 6.46767 6.56665 6.65268 6.66912 7.02506 7.07072 7.15025 7.21691 7.28497 7.53898 7.70322 7.85283 8.06198 8.16680 8.28690 8.37370 8.89434 9.49568 10.94925 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.005065 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.146448 B = 5526.726935 C = 5733.354856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.045 0.955 5 C -0.550 4.550 6 H 0.056 0.944 7 C 0.073 3.927 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.528 5.528 14 C 0.059 3.941 15 C -0.059 4.059 16 C -0.185 4.185 17 C 0.214 3.786 18 N -0.540 5.540 19 C 0.320 3.680 20 N -0.586 5.586 21 C 0.352 3.648 22 O -0.299 6.299 23 C 0.039 3.961 24 C 0.101 3.899 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.263 0.737 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.195 0.805 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 7.079 12.114 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.063 0.937 5 C -0.589 4.589 6 H 0.074 0.926 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.253 5.253 14 C -0.070 4.070 15 C -0.097 4.097 16 C -0.190 4.190 17 C 0.073 3.927 18 N -0.259 5.259 19 C 0.031 3.969 20 N -0.317 5.317 21 C 0.165 3.835 22 O -0.203 6.203 23 C -0.056 4.056 24 C -0.027 4.027 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.211 0.789 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.414 6.689 12.581 15.242 hybrid contribution 1.787 0.514 -0.484 1.921 sum -3.627 7.203 12.097 14.539 Atomic orbital electron populations 1.21714 0.98778 0.98545 1.00582 1.21612 0.92335 0.98969 1.02147 1.19351 0.93272 0.91394 0.85032 0.93723 1.21653 0.92649 1.38840 1.05757 0.92551 1.24873 0.97844 0.94774 0.95566 1.69857 1.34977 1.37840 1.09333 0.86743 0.86090 0.78257 0.77464 1.20224 1.21180 1.20371 1.62812 1.56050 1.01909 1.04498 1.21974 0.97901 0.89880 0.97258 1.20332 1.01620 0.97649 0.90123 1.20335 1.06753 0.96848 0.95062 1.21605 0.87320 0.89287 0.94470 1.68320 1.21114 1.38072 0.98345 1.24488 0.89491 0.86211 0.96707 1.68039 1.21190 1.12635 1.29865 1.20035 0.88740 0.85040 0.89677 1.86235 1.76537 1.25142 1.32431 1.22886 1.01579 0.97943 0.83187 1.20830 0.99349 0.97833 0.84718 0.94147 0.93441 0.95516 0.94816 0.88760 0.92709 0.94284 0.90352 0.90131 0.90778 0.78891 0.92286 0.88531 0.92246 0.88220 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.39 16 2 C -0.11 -2.55 5.16 -26.74 -0.14 -2.69 16 3 C 0.22 5.01 1.71 -68.86 -0.12 4.89 16 4 H 0.04 1.15 7.90 -51.93 -0.41 0.74 16 5 C -0.55 -13.95 7.22 -34.44 -0.25 -14.20 16 6 H 0.06 1.44 5.82 -52.49 -0.31 1.13 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -23.84 11.30 55.43 0.63 -23.22 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.53 -10.67 4.09 -229.59 -0.94 -11.61 16 14 C 0.06 1.08 5.14 -3.70 -0.02 1.06 16 15 C -0.06 -0.93 5.62 -28.03 -0.16 -1.09 16 16 C -0.18 -3.14 5.78 -104.51 -0.60 -3.74 16 17 C 0.21 3.89 6.69 -82.50 -0.55 3.33 16 18 N -0.54 -9.21 10.34 -11.03 -0.11 -9.33 16 19 C 0.32 4.62 12.28 -92.27 -1.13 3.49 16 20 N -0.59 -8.77 9.39 -14.63 -0.14 -8.91 16 21 C 0.35 5.53 7.50 -16.65 -0.12 5.41 16 22 O -0.30 -4.12 9.79 -18.26 -0.18 -4.30 16 23 C 0.04 0.39 10.41 101.05 1.05 1.44 16 24 C 0.10 1.99 4.88 -5.21 -0.03 1.97 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.92 7.75 -51.93 -0.40 0.51 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.75 6.41 -51.93 -0.33 0.42 16 29 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.04 0.76 7.47 -51.93 -0.39 0.38 16 32 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.07 7.94 -51.93 -0.41 0.65 16 35 H 0.19 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.10 2.01 6.53 -51.93 -0.34 1.67 16 40 H 0.08 1.70 5.95 -51.93 -0.31 1.39 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -27.68 318.01 -8.48 -36.16 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.71 Total: 1.64 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.80 Total: -0.72 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.56 Total: -53.06 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.18 Total: -4.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.68 -8.48 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.410 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds