Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.47148 * 111.00041 * 189.20673 * 13 3 2 15 15 C 1.52983 * 108.57773 * 165.43155 * 14 13 3 16 16 C 1.50419 * 109.83859 * 50.07782 * 15 14 13 17 17 C 1.37602 * 121.95224 * 343.25096 * 16 15 14 18 18 N 1.32870 * 118.96224 * 180.42188 * 17 16 15 19 19 C 1.31681 * 121.05108 * 359.88573 * 18 17 16 20 20 N 1.31770 * 121.84716 * 359.97438 * 19 18 17 21 21 C 1.32798 * 120.57514 * 0.08362 * 20 19 18 22 22 O 1.35523 * 120.52066 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99737 * 359.97438 * 22 21 20 24 24 C 1.46704 * 110.99901 * 66.04690 * 13 3 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.62383 * 285.16056 * 14 13 3 32 32 H 1.09003 * 109.61684 * 45.70604 * 14 13 3 33 33 H 1.09002 * 109.41246 * 289.96792 * 15 14 13 34 34 H 1.08998 * 109.35446 * 170.15015 * 15 14 13 35 35 H 1.08006 * 119.08102 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47388 * 59.99867 * 23 22 21 37 37 H 1.08996 * 109.46784 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.46796 * 299.99998 * 23 22 21 39 39 H 1.08997 * 109.31745 * 296.23320 * 24 13 3 40 40 H 1.09003 * 109.31799 * 55.67286 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6515 2.0992 1.2553 14 6 1.9305 3.5431 1.2034 15 6 1.1894 4.2245 2.3552 16 6 1.4763 3.5040 3.6441 17 6 2.0024 2.2327 3.6661 18 7 2.2247 1.6486 4.8387 19 6 1.9518 2.2676 5.9684 20 7 1.4499 3.4858 5.9901 21 6 1.1996 4.1335 4.8582 22 8 0.6840 5.3866 4.8818 23 6 0.4296 5.9593 6.1661 24 6 2.3333 1.4879 2.4015 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 3.0022 3.7127 1.3065 32 1 1.5828 3.9490 0.2534 33 1 0.1173 4.2031 2.1593 34 1 1.5221 5.2592 2.4370 35 1 2.1446 1.7627 6.9035 36 1 1.3607 6.0151 6.7299 37 1 0.0189 6.9613 6.0421 38 1 -0.2853 5.3382 6.7057 39 1 2.0137 0.4505 2.4998 40 1 3.4105 1.5165 2.2374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = -4.347082 kcal Electronic energy + Delta-G solvation = -22216.476117 eV Core-core repulsion = 19030.962023 eV Total energy + Delta-G solvation = -3185.514094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47896 -39.86421 -39.11873 -36.03633 -34.27655 -33.86401 -32.50881 -30.94114 -29.11906 -28.13262 -26.53343 -25.47473 -24.34445 -23.77332 -21.72019 -20.86011 -19.45232 -18.97018 -18.28487 -17.34895 -16.91071 -16.40756 -16.21204 -15.96480 -15.43271 -15.26777 -15.16908 -14.86110 -14.53874 -14.08127 -13.94953 -13.28713 -13.23522 -13.10332 -12.97839 -12.78518 -12.65296 -12.55609 -12.52071 -12.40753 -11.94520 -11.57402 -11.42999 -11.32298 -11.03961 -10.93380 -10.42011 -10.35236 -9.83781 -9.02949 -8.03166 -6.24328 -0.07715 0.07039 1.39769 1.41768 1.47784 1.87900 2.41584 2.70564 2.88335 3.10711 3.16944 3.48783 3.66819 3.85731 3.97616 4.31017 4.41624 4.42809 4.54751 4.55085 4.64915 4.72460 4.72910 4.76188 4.82844 4.92787 4.97241 5.00694 5.16037 5.23581 5.29153 5.45132 5.48152 5.64072 5.78875 5.84582 6.01925 6.10898 6.14818 6.35327 6.53624 6.93302 7.06949 7.46293 8.92893 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.005065 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.146448 B = 5526.726935 C = 5733.354856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.222 3.778 4 H 0.018 0.982 5 C -0.555 4.555 6 H 0.050 0.950 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.524 5.524 14 C 0.060 3.940 15 C -0.046 4.046 16 C -0.200 4.200 17 C 0.199 3.801 18 N -0.559 5.559 19 C 0.324 3.676 20 N -0.582 5.582 21 C 0.356 3.644 22 O -0.304 6.304 23 C 0.033 3.967 24 C 0.112 3.888 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 8.185 14.053 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.115 3.885 4 H 0.036 0.964 5 C -0.594 4.594 6 H 0.068 0.932 7 C -0.171 4.171 8 N -0.545 5.545 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.248 5.248 14 C -0.069 4.069 15 C -0.084 4.084 16 C -0.205 4.205 17 C 0.058 3.942 18 N -0.278 5.278 19 C 0.036 3.964 20 N -0.313 5.313 21 C 0.168 3.832 22 O -0.208 6.208 23 C -0.061 4.061 24 C -0.016 4.016 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.251 0.749 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.920 7.817 14.537 17.535 hybrid contribution 1.907 0.246 -0.970 2.154 sum -4.013 8.063 13.567 16.284 Atomic orbital electron populations 1.21571 0.96362 0.99790 1.00652 1.21460 0.94450 0.98150 1.00516 1.19117 0.92005 0.91679 0.85656 0.96411 1.21888 0.93905 1.38229 1.05411 0.93200 1.25503 1.01344 0.94784 0.95511 1.69973 1.36225 1.38598 1.09688 0.85885 0.81919 0.78145 0.77317 1.20159 1.20860 1.20145 1.62745 1.55779 1.02822 1.03441 1.22005 0.97366 0.88914 0.98616 1.20226 1.01565 0.98058 0.88555 1.20378 1.07398 0.96682 0.96082 1.21292 0.88832 0.89916 0.94156 1.68304 1.22032 1.38810 0.98672 1.25299 0.87823 0.86030 0.97201 1.68176 1.21079 1.12713 1.29321 1.20087 0.88026 0.85729 0.89310 1.86236 1.75844 1.24010 1.34723 1.23211 1.01961 0.99274 0.81681 1.20573 0.97732 0.97732 0.85610 0.94436 0.92861 0.93691 0.95139 0.91541 0.92830 0.95914 0.90442 0.89402 0.88931 0.74929 0.92050 0.85351 0.91968 0.89257 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.80 71.98 0.71 -4.27 16 2 C -0.11 -4.98 5.16 30.59 0.16 -4.83 16 3 C 0.22 10.64 1.71 44.16 0.08 10.72 16 4 H 0.02 0.95 7.90 -2.39 -0.02 0.93 16 5 C -0.56 -28.95 7.22 25.60 0.18 -28.76 16 6 H 0.05 2.62 5.82 -2.91 -0.02 2.61 16 7 C 0.03 1.56 5.29 84.65 0.45 2.00 16 8 N -0.91 -50.09 11.30 21.45 0.24 -49.85 16 9 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.52 -21.52 4.09 -880.29 -3.60 -25.12 16 14 C 0.06 2.20 5.14 86.25 0.44 2.64 16 15 C -0.05 -1.39 5.62 29.75 0.17 -1.23 16 16 C -0.20 -6.54 5.78 -19.79 -0.11 -6.66 16 17 C 0.20 7.12 6.69 42.17 0.28 7.40 16 18 N -0.56 -18.43 10.34 -188.83 -1.95 -20.38 16 19 C 0.32 8.56 12.28 180.93 2.22 10.78 16 20 N -0.58 -15.85 9.39 -312.86 -2.94 -18.79 16 21 C 0.36 10.40 7.50 84.86 0.64 11.03 16 22 O -0.30 -7.51 9.79 -88.26 -0.86 -8.37 16 23 C 0.03 0.54 10.41 113.37 1.18 1.72 16 24 C 0.11 4.51 4.88 85.51 0.42 4.93 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 2.02 7.75 -2.39 -0.02 2.00 16 27 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.03 1.40 6.41 -2.39 -0.02 1.38 16 29 H 0.07 3.48 5.95 -2.39 -0.01 3.47 16 30 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.02 0.90 7.47 -2.39 -0.02 0.89 16 32 H 0.08 2.84 7.87 -2.39 -0.02 2.82 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.48 7.94 -2.39 -0.02 2.46 16 35 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 39 H 0.09 3.70 6.53 -2.39 -0.02 3.68 16 40 H 0.06 2.44 5.95 -2.39 -0.01 2.43 16 Total: -1.00 -59.75 318.01 0.76 -58.99 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.04 Total: 13.32 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.80 Total: 5.50 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -8.25 Total: -114.14 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.86 Total: -8.37 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -59.75 0.76 -58.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.644 kcal (2) G-P(sol) polarization free energy of solvation -59.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds