Wall clock time and date at job start Mon Mar 30 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.47442 * 110.99713 * 69.87809 * 13 3 2 15 15 C 1.54317 * 107.23663 * 123.25588 * 14 13 3 16 16 C 1.55143 * 103.01700 * 22.28412 * 15 14 13 17 17 C 1.47842 * 111.00181 * 190.71630 * 13 3 2 18 18 H 1.09009 * 110.37586 * 332.47208 * 17 13 3 19 19 C 1.50702 * 110.37304 * 94.80862 * 17 13 3 20 20 C 1.38219 * 120.01068 * 24.72797 * 19 17 13 21 21 C 1.38233 * 120.02390 * 179.72409 * 20 19 17 22 22 C 1.38266 * 120.04867 * 0.54946 * 21 20 19 23 23 C 1.38175 * 120.02464 * 359.72543 * 22 21 20 24 24 C 1.38436 * 120.01517 * 204.99981 * 19 17 13 25 25 F 1.35106 * 120.02249 * 359.97438 * 24 19 17 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.88727 * 242.66256 * 14 13 3 33 33 H 1.09000 * 109.89148 * 3.68482 * 14 13 3 34 34 H 1.09002 * 110.70455 * 140.65912 * 15 14 13 35 35 H 1.08990 * 110.70616 * 263.90389 * 15 14 13 36 36 H 1.09002 * 110.99388 * 82.43111 * 16 15 14 37 37 H 1.08996 * 110.99064 * 206.25530 * 16 15 14 38 38 H 1.08000 * 119.99097 * 359.97438 * 20 19 17 39 39 H 1.07993 * 119.97493 * 180.25371 * 21 20 19 40 40 H 1.07995 * 119.98440 * 179.75020 * 22 21 20 41 41 H 1.08006 * 120.01058 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.4043 1.5463 2.3960 15 6 3.1300 2.7245 3.0791 16 6 2.2965 3.9545 2.6327 17 6 1.8982 3.5555 1.1899 18 1 2.7122 3.7718 0.4978 19 6 0.6456 4.2816 0.7715 20 6 -0.5927 3.7114 0.9991 21 6 -1.7420 4.3798 0.6207 22 6 -1.6538 5.6142 0.0039 23 6 -0.4167 6.1835 -0.2296 24 6 0.7351 5.5175 0.1542 25 9 1.9453 6.0735 -0.0732 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8292 -0.0602 -2.9503 32 1 1.7181 1.0753 3.0998 33 1 3.1310 0.8154 2.0414 34 1 3.1057 2.6155 4.1634 35 1 4.1565 2.8043 2.7215 36 1 1.4145 4.0775 3.2612 37 1 2.9043 4.8592 2.6339 38 1 -0.6627 2.7451 1.4764 39 1 -2.7093 3.9354 0.8025 40 1 -2.5523 6.1336 -0.2949 41 1 -0.3481 7.1480 -0.7110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:47 Heat of formation + Delta-G solvation = -36.280192 kcal Electronic energy + Delta-G solvation = -22690.076081 eV Core-core repulsion = 19483.257302 eV Total energy + Delta-G solvation = -3206.818779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.81100 -40.71564 -39.09634 -35.98300 -33.62574 -32.74823 -31.30331 -31.11945 -28.56497 -28.11649 -24.91437 -24.00745 -23.22728 -22.52553 -21.20173 -20.45120 -18.71127 -18.19842 -17.60288 -17.01498 -16.59955 -16.51231 -16.17057 -15.57912 -14.94161 -14.82896 -14.71802 -14.37060 -14.28150 -14.03575 -13.54815 -13.37627 -13.24024 -13.06602 -12.79059 -12.70681 -12.50690 -12.35310 -12.20423 -12.02261 -11.90954 -11.60495 -11.53498 -11.47503 -11.26719 -10.92985 -10.44080 -9.71499 -9.44802 -8.98152 -8.05304 -6.25164 0.33045 0.45068 1.32054 1.35430 1.44334 2.37578 2.79215 3.13975 3.32099 3.49557 3.78266 3.94384 4.05389 4.16533 4.24993 4.29753 4.53101 4.54681 4.60896 4.68226 4.75711 4.79763 4.94340 4.94727 5.02096 5.13695 5.17119 5.17530 5.24937 5.30980 5.35264 5.41428 5.47930 5.54427 5.62694 5.63748 5.70810 5.82653 6.07894 6.13054 6.18853 6.40641 6.60636 6.96779 7.44448 8.90913 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.006810 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.676222 B = 4110.691297 C = 4313.318281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.009 1.009 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.286 1.286 13 N -0.508 5.508 14 C 0.045 3.955 15 C -0.130 4.130 16 C -0.106 4.106 17 C 0.110 3.890 18 H 0.030 0.970 19 C -0.109 4.109 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.095 4.095 23 C -0.161 4.161 24 C 0.062 3.938 25 F -0.158 7.158 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.139 0.861 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 7.811 8.448 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.009 0.991 5 C -0.586 4.586 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.212 1.212 13 N -0.231 5.231 14 C -0.083 4.083 15 C -0.168 4.168 16 C -0.144 4.144 17 C 0.001 3.999 18 H 0.048 0.952 19 C -0.111 4.111 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.113 4.113 23 C -0.180 4.180 24 C 0.042 3.958 25 F -0.137 7.137 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.182 0.818 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.033 7.623 8.334 15.108 hybrid contribution 2.702 0.050 -1.018 2.888 sum -7.331 7.674 7.316 12.890 Atomic orbital electron populations 1.21564 0.96122 0.99780 1.00647 1.21392 0.94687 0.97889 1.00206 1.19080 0.91535 0.91437 0.86306 0.99114 1.22092 0.94116 1.37119 1.05226 0.92917 1.25597 1.01508 0.95192 0.95684 1.70012 1.36012 1.39205 1.09765 0.85764 0.81927 0.77777 0.77740 1.19622 1.20308 1.21203 1.63677 1.53870 1.01047 1.04459 1.22730 0.96015 0.97092 0.92482 1.22718 0.98171 0.94584 1.01341 1.22629 1.00082 0.97802 0.93931 1.21139 0.92401 0.89426 0.96920 0.95208 1.19991 0.97139 0.93432 1.00518 1.21138 0.90396 0.99811 0.97730 1.21611 0.99142 0.95362 0.98814 1.21356 0.97156 0.95475 0.97265 1.21330 0.91304 1.01937 1.03424 1.18039 0.80748 0.94108 1.02855 1.91417 1.44056 1.85171 1.93062 0.93607 0.91844 0.95336 0.94891 0.92302 0.93078 0.90458 0.93356 0.88652 0.93405 0.89502 0.91409 0.84284 0.82675 0.81778 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.80 71.98 0.71 -4.13 16 2 C -0.10 -4.89 5.21 30.59 0.16 -4.73 16 3 C 0.22 11.17 1.62 44.17 0.07 11.24 16 4 H -0.01 -0.53 8.07 -2.39 -0.02 -0.55 16 5 C -0.55 -29.77 6.24 25.60 0.16 -29.61 16 6 H 0.05 2.88 6.22 -2.91 -0.02 2.86 16 7 C 0.02 1.11 5.29 84.65 0.45 1.55 16 8 N -0.91 -52.87 11.29 21.45 0.24 -52.63 16 9 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 N -0.51 -20.73 3.02 -844.28 -2.55 -23.28 16 14 C 0.04 1.66 5.33 86.65 0.46 2.12 16 15 C -0.13 -4.17 6.73 31.78 0.21 -3.96 16 16 C -0.11 -3.44 6.48 31.98 0.21 -3.23 16 17 C 0.11 4.39 2.17 44.64 0.10 4.48 16 18 H 0.03 1.46 6.73 -2.38 -0.02 1.44 16 19 C -0.11 -3.93 5.09 -19.82 -0.10 -4.03 16 20 C -0.07 -2.23 9.35 22.26 0.21 -2.02 16 21 C -0.13 -3.11 10.05 22.28 0.22 -2.88 16 22 C -0.09 -2.06 10.04 22.26 0.22 -1.84 16 23 C -0.16 -4.31 10.03 22.31 0.22 -4.09 16 24 C 0.06 2.15 7.25 22.37 0.16 2.31 16 25 F -0.16 -6.07 16.56 44.97 0.74 -5.32 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 2.25 7.48 -2.39 -0.02 2.24 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 1.51 7.04 -2.39 -0.02 1.49 16 30 H 0.06 3.19 5.95 -2.39 -0.01 3.18 16 31 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.05 2.08 5.67 -2.39 -0.01 2.06 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.69 7.73 -2.39 -0.02 1.67 16 36 H 0.09 2.48 8.05 -2.39 -0.02 2.46 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.14 4.32 7.02 -2.91 -0.02 4.30 16 39 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -62.65 325.55 4.94 -57.71 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.01 Total: 15.75 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 3.46 Total: -38.80 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -2.31 Total: -75.91 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.74 Total: -5.32 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -62.65 4.94 -57.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.432 kcal (2) G-P(sol) polarization free energy of solvation -62.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds