Wall clock time and date at job start Mon Mar 30 2020 02:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46864 * 2 1 4 4 H 1.09004 * 109.47108 * 181.11822 * 3 2 1 5 5 C 1.50700 * 109.47045 * 301.11472 * 3 2 1 6 6 H 1.08004 * 119.99933 * 119.99623 * 5 3 2 7 7 C 1.37875 * 120.00327 * 300.00014 * 5 3 2 8 8 N 1.31517 * 119.99835 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00345 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46945 * 90.00020 * 9 7 5 11 11 H 1.48495 * 109.47074 * 210.00435 * 9 7 5 12 12 H 1.48501 * 109.46723 * 329.99975 * 9 7 5 13 13 N 1.46891 * 109.47099 * 61.11630 * 3 2 1 14 14 C 1.48536 * 111.00198 * 55.90751 * 13 3 2 15 15 C 1.54937 * 103.22685 * 159.71789 * 14 13 3 16 16 C 1.54595 * 102.92289 * 322.58942 * 15 14 13 17 17 C 1.47898 * 110.99994 * 173.30553 * 13 3 2 18 18 H 1.08998 * 110.08674 * 333.59903 * 17 13 3 19 19 C 1.50701 * 109.92089 * 94.80481 * 17 13 3 20 20 C 1.38219 * 120.01212 * 24.06502 * 19 17 13 21 21 C 1.38219 * 120.02847 * 179.97438 * 20 19 17 22 22 C 1.38268 * 120.04899 * 359.97438 * 21 20 19 23 23 C 1.38176 * 120.02794 * 0.02562 * 22 21 20 24 24 C 1.38439 * 120.01559 * 204.04507 * 19 17 13 25 25 F 1.35097 * 120.02306 * 0.04219 * 24 19 17 26 26 H 1.09000 * 109.47832 * 305.22701 * 1 2 3 27 27 H 1.09002 * 109.47592 * 65.23108 * 1 2 3 28 28 H 1.09009 * 109.46912 * 185.23226 * 1 2 3 29 29 H 1.08997 * 109.47384 * 239.99961 * 2 1 3 30 30 H 1.08998 * 109.47107 * 119.99690 * 2 1 3 31 31 H 0.96999 * 119.99950 * 180.02562 * 8 7 5 32 32 H 1.09004 * 110.66381 * 41.28602 * 14 13 3 33 33 H 1.08992 * 110.81221 * 278.22209 * 14 13 3 34 34 H 1.08996 * 110.72563 * 204.22665 * 15 14 13 35 35 H 1.09000 * 110.87416 * 81.01545 * 15 14 13 36 36 H 1.09005 * 110.30913 * 263.03751 * 16 15 14 37 37 H 1.09000 * 110.38994 * 140.91919 * 16 15 14 38 38 H 1.08008 * 119.98408 * 359.97438 * 20 19 17 39 39 H 1.08003 * 119.98003 * 180.27178 * 21 20 19 40 40 H 1.08001 * 119.98533 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.01451 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4427 -0.0201 5 6 1.5151 2.1609 -1.2164 6 1 0.8960 3.0382 -1.1002 7 6 1.8251 1.6980 -2.4776 8 7 2.5784 0.6293 -2.6191 9 14 1.1739 2.5880 -3.9854 10 1 2.1440 3.6327 -4.4009 11 1 0.9888 1.6158 -5.0925 12 1 -0.1288 3.2229 -3.6613 13 7 1.5724 2.1272 1.2126 14 6 1.9887 1.3909 2.4337 15 6 1.8972 2.4668 3.5448 16 6 2.3866 3.7463 2.8283 17 6 2.1756 3.4726 1.3277 18 1 3.1330 3.4993 0.8072 19 6 1.2452 4.5042 0.7437 20 6 -0.1110 4.2482 0.6683 21 6 -0.9648 5.1944 0.1332 22 6 -0.4635 6.3980 -0.3268 23 6 0.8919 6.6562 -0.2526 24 6 1.7483 5.7088 0.2827 25 9 3.0737 5.9598 0.3554 26 1 -0.3635 0.5927 0.8394 27 1 -0.3634 0.4305 -0.9331 28 1 -0.3633 -1.0235 0.0937 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7968 0.3039 -3.5064 32 1 3.0114 1.0272 2.3336 33 1 1.3069 0.5660 2.6398 34 1 2.5531 2.2168 4.3787 35 1 0.8691 2.5856 3.8867 36 1 3.4429 3.9163 3.0371 37 1 1.7963 4.6070 3.1427 38 1 -0.5038 3.3085 1.0278 39 1 -2.0250 4.9953 0.0788 40 1 -1.1315 7.1364 -0.7451 41 1 1.2833 7.5963 -0.6124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:52 Heat of formation + Delta-G solvation = -17.482271 kcal Electronic energy + Delta-G solvation = -23005.320594 eV Core-core repulsion = 19799.316953 eV Total energy + Delta-G solvation = -3206.003640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.34874 -39.31447 -37.58289 -34.40417 -31.71685 -31.22163 -29.97789 -29.43681 -27.27732 -25.96311 -23.38906 -22.66706 -21.88081 -20.95358 -19.64497 -18.81856 -17.13150 -16.20641 -15.80714 -15.61168 -15.34771 -14.87715 -14.54952 -14.12023 -13.59539 -13.36436 -13.19849 -12.76567 -12.63183 -12.29655 -12.18052 -11.97260 -11.65800 -11.49351 -11.26119 -11.02866 -10.91294 -10.71687 -10.60305 -10.43581 -10.30479 -10.11141 -9.84623 -9.68327 -9.41420 -8.88032 -8.40791 -8.24296 -8.00775 -7.34214 -5.96207 -3.97815 1.70360 1.79913 3.33115 3.39785 3.44231 4.13337 4.44944 4.75028 4.88014 5.09458 5.21829 5.29936 5.36362 5.40416 5.49841 5.55352 5.74445 5.88778 5.98674 6.04446 6.19922 6.23398 6.35580 6.41660 6.43778 6.53433 6.56393 6.59027 6.65370 6.66517 6.75927 6.95292 7.00435 7.11543 7.23981 7.39592 7.45625 7.61492 7.69969 7.90583 8.09467 8.33768 8.56725 9.08375 9.66338 11.10804 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.010286 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.463025 B = 2721.530326 C = 3921.581825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.209 3.791 4 H -0.002 1.002 5 C -0.493 4.493 6 H 0.071 0.929 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.500 5.500 14 C 0.036 3.964 15 C -0.121 4.121 16 C -0.122 4.122 17 C 0.115 3.885 18 H 0.062 0.938 19 C -0.067 4.067 20 C -0.048 4.048 21 C -0.142 4.142 22 C -0.108 4.108 23 C -0.165 4.165 24 C 0.091 3.909 25 F -0.145 7.145 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.091 0.909 30 H 0.013 0.987 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 6.648 8.941 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.103 3.897 4 H 0.016 0.984 5 C -0.532 4.532 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.225 5.225 14 C -0.092 4.092 15 C -0.160 4.160 16 C -0.161 4.161 17 C 0.006 3.994 18 H 0.080 0.920 19 C -0.069 4.069 20 C -0.066 4.066 21 C -0.160 4.160 22 C -0.126 4.126 23 C -0.184 4.184 24 C 0.072 3.928 25 F -0.124 7.124 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.162 0.838 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.398 6.552 8.737 11.773 hybrid contribution 0.932 0.407 -1.181 1.558 sum -3.467 6.959 7.556 10.842 Atomic orbital electron populations 1.21462 0.97274 0.97217 1.01773 1.21549 0.95233 0.98025 1.00063 1.19476 0.93035 0.91084 0.86084 0.98403 1.21224 1.30784 1.11889 0.89274 0.91122 1.24860 0.95343 0.95015 0.98750 1.69878 1.37761 1.23183 1.22609 0.86691 0.79573 0.79487 0.82994 1.20942 1.21401 1.19695 1.64675 1.54875 1.00236 1.02705 1.23113 0.98701 0.96577 0.90815 1.22474 1.01054 0.95077 0.97347 1.22450 1.00707 0.98321 0.94576 1.20919 0.94903 0.89943 0.93625 0.91984 1.19749 0.95493 0.92546 0.99081 1.20998 0.91617 0.98600 0.95393 1.21186 0.99951 0.94162 1.00680 1.20823 0.94196 0.97525 1.00045 1.20914 0.93980 0.99587 1.03941 1.17586 0.77342 0.95447 1.02464 1.91434 1.32005 1.94432 1.94484 0.93671 0.92557 0.96705 0.89097 0.96858 0.93190 0.94678 0.90599 0.92021 0.91251 0.91910 0.91635 0.83825 0.86183 0.86144 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.47 37.15 0.35 -2.19 16 2 C -0.11 -2.55 5.13 -26.73 -0.14 -2.69 16 3 C 0.21 5.02 1.50 -68.87 -0.10 4.92 16 4 H 0.00 -0.04 7.91 -51.93 -0.41 -0.45 16 5 C -0.49 -12.88 6.85 -34.44 -0.24 -13.12 16 6 H 0.07 1.85 4.71 -52.48 -0.25 1.60 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -25.24 11.33 55.43 0.63 -24.61 16 9 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.50 -9.98 2.70 -217.42 -0.59 -10.57 16 14 C 0.04 0.62 5.23 -1.90 -0.01 0.61 16 15 C -0.12 -1.72 7.06 -24.87 -0.18 -1.90 16 16 C -0.12 -1.90 6.56 -25.37 -0.17 -2.07 16 17 C 0.12 2.21 2.17 -67.80 -0.15 2.07 16 18 H 0.06 1.37 7.30 -51.93 -0.38 0.99 16 19 C -0.07 -1.27 3.38 -104.55 -0.35 -1.62 16 20 C -0.05 -0.86 7.79 -39.60 -0.31 -1.16 16 21 C -0.14 -2.22 10.04 -39.58 -0.40 -2.62 16 22 C -0.11 -1.61 10.04 -39.59 -0.40 -2.00 16 23 C -0.17 -2.67 10.03 -39.52 -0.40 -3.07 16 24 C 0.09 1.69 7.24 -39.42 -0.29 1.41 16 25 F -0.14 -2.77 16.57 2.25 0.04 -2.73 16 26 H 0.04 0.90 7.48 -51.93 -0.39 0.51 16 27 H 0.06 1.30 7.38 -51.93 -0.38 0.92 16 28 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.09 2.38 6.10 -51.93 -0.32 2.07 16 30 H 0.01 0.28 6.79 -51.93 -0.35 -0.08 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 33 H 0.08 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 38 H 0.14 2.62 7.26 -52.48 -0.38 2.24 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -27.81 322.57 -9.10 -36.92 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.17 Total: 1.36 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -2.86 Total: -21.88 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.04 Total: -35.18 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.81 -9.10 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.435 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds