Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47360 * 2 1 4 4 H 1.09000 * 109.46497 * 55.00376 * 3 2 1 5 5 C 1.50706 * 109.46925 * 175.00112 * 3 2 1 6 6 H 1.07999 * 119.99515 * 120.00667 * 5 3 2 7 7 C 1.37870 * 120.00176 * 300.00134 * 5 3 2 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 N 1.46893 * 109.47050 * 295.00013 * 3 2 1 14 14 C 1.47841 * 111.00560 * 295.84253 * 13 3 2 15 15 C 1.54907 * 104.79971 * 213.63831 * 14 13 3 16 16 C 1.55138 * 101.65221 * 37.06744 * 15 14 13 17 17 H 1.09003 * 110.85675 * 82.80119 * 16 15 14 18 18 O 1.42901 * 110.70644 * 205.96475 * 16 15 14 19 19 C 1.35458 * 117.00125 * 263.60038 * 18 16 15 20 20 N 1.32321 * 119.19446 * 359.72292 * 19 18 16 21 21 C 1.32300 * 120.75762 * 179.75958 * 20 19 18 22 22 C 1.38587 * 119.17603 * 0.50922 * 21 20 19 23 23 C 1.38599 * 118.51955 * 359.75026 * 22 21 20 24 24 N 1.32298 * 119.17838 * 359.97438 * 23 22 21 25 25 C 1.47451 * 110.99945 * 174.99953 * 13 3 2 26 26 H 1.09002 * 109.47020 * 59.99914 * 1 2 3 27 27 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46910 * 300.00078 * 1 2 3 29 29 H 1.09009 * 109.46795 * 240.00190 * 2 1 3 30 30 H 1.08998 * 109.47691 * 120.00345 * 2 1 3 31 31 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 32 32 H 1.09004 * 110.37151 * 332.46582 * 14 13 3 33 33 H 1.08999 * 110.37603 * 94.80592 * 14 13 3 34 34 H 1.08995 * 110.99137 * 278.98021 * 15 14 13 35 35 H 1.09002 * 111.02695 * 155.17162 * 15 14 13 36 36 H 1.08000 * 120.41101 * 180.28319 * 21 20 19 37 37 H 1.08001 * 120.74381 * 179.72983 * 22 21 20 38 38 H 1.08007 * 120.41030 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.88691 * 242.66493 * 25 13 3 40 40 H 1.09002 * 109.88696 * 3.85177 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2278 8 7 5.4540 0.8802 1.3361 9 14 3.0964 0.1099 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7942 0.2358 3.8754 12 1 1.7882 0.8093 2.6395 13 7 1.6514 2.0992 -1.2552 14 6 2.3036 1.4544 -2.4147 15 6 2.5565 2.6071 -3.4181 16 6 2.9272 3.7750 -2.4666 17 1 3.9791 3.7270 -2.1848 18 8 2.6250 5.0343 -3.0707 19 6 3.6411 5.6765 -3.6952 20 7 4.8422 5.1217 -3.7113 21 6 5.8556 5.7196 -4.3163 22 6 5.6489 6.9457 -4.9283 23 6 4.3792 7.5000 -4.8874 24 7 3.4093 6.8457 -4.2699 25 6 2.0223 3.5263 -1.2417 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8770 0.4823 2.1131 32 1 3.2473 0.9989 -2.1144 33 1 1.6433 0.7068 -2.8542 34 1 1.6541 2.8366 -3.9846 35 1 3.3846 2.3697 -4.0860 36 1 6.8326 5.2595 -4.3300 37 1 6.4592 7.4581 -5.4256 38 1 4.1839 8.4540 -5.3547 39 1 1.1262 4.1429 -1.3114 40 1 2.5653 3.7596 -0.3259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = 34.473388 kcal Electronic energy + Delta-G solvation = -21953.159342 eV Core-core repulsion = 18769.328630 eV Total energy + Delta-G solvation = -3183.830712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14895 -39.14014 -37.38778 -34.00271 -33.76109 -31.99255 -31.28155 -29.58326 -27.99265 -26.70526 -24.71099 -23.82777 -22.68306 -21.46315 -20.74436 -19.21497 -18.73929 -17.58999 -16.73445 -16.07607 -15.77154 -15.49873 -15.05842 -14.60022 -14.15987 -13.91913 -13.51322 -13.38711 -12.94642 -12.75235 -12.52403 -12.31280 -11.96080 -11.60040 -11.41779 -11.13237 -11.01233 -10.97407 -10.85582 -10.58299 -10.49270 -10.24433 -10.06518 -9.71015 -9.54449 -9.25338 -9.12178 -8.91256 -8.60101 -7.29675 -6.15779 -4.16989 0.98982 1.03218 2.69234 3.23794 3.35447 3.37362 3.77421 4.05664 4.34468 4.50882 4.66081 4.87740 5.02970 5.03818 5.07878 5.17128 5.28598 5.61617 5.71698 5.81495 5.97597 6.02044 6.05653 6.08107 6.21031 6.22564 6.44207 6.48120 6.53004 6.67094 6.71203 6.76265 6.86701 6.90045 7.06946 7.20061 7.36121 7.50499 7.93999 8.03787 8.12550 8.38916 8.85167 9.47236 10.96520 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.004817 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.472395 B = 5811.319908 C = 6506.052920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.172 3.828 4 H 0.041 0.959 5 C -0.548 4.548 6 H 0.078 0.922 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.263 1.263 13 N -0.510 5.510 14 C 0.044 3.956 15 C -0.141 4.141 16 C 0.075 3.925 17 H 0.106 0.894 18 O -0.279 6.279 19 C 0.508 3.492 20 N -0.561 5.561 21 C 0.189 3.811 22 C -0.281 4.281 23 C 0.184 3.816 24 N -0.532 5.532 25 C 0.057 3.943 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.072 0.928 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 8.392 -11.361 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.064 3.936 4 H 0.058 0.942 5 C -0.586 4.586 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.188 1.188 13 N -0.235 5.235 14 C -0.083 4.083 15 C -0.180 4.180 16 C 0.017 3.983 17 H 0.124 0.876 18 O -0.178 6.178 19 C 0.206 3.794 20 N -0.290 5.290 21 C 0.023 3.977 22 C -0.304 4.304 23 C 0.018 3.982 24 N -0.258 5.258 25 C -0.072 4.072 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.188 0.812 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.091 0.909 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.891 7.799 -10.704 13.555 hybrid contribution 1.485 -0.107 0.473 1.562 sum -1.406 7.692 -10.231 12.877 Atomic orbital electron populations 1.21745 0.97332 0.99401 1.01712 1.21870 0.94083 0.99034 1.00699 1.19969 0.94716 0.90813 0.88098 0.94156 1.21624 0.90353 1.39350 1.07269 0.90390 1.24972 0.94719 0.95216 0.97831 1.69913 1.08835 1.44790 1.29693 0.86861 0.80751 0.79865 0.80837 1.20488 1.22609 1.18812 1.63971 1.54995 1.00428 1.04066 1.22935 0.99758 0.95539 0.90093 1.23099 1.01398 0.95392 0.98080 1.24060 1.02489 0.78229 0.93489 0.87628 1.86134 1.31052 1.35413 1.65250 1.20852 0.84869 0.86404 0.87280 1.68149 1.00545 1.37466 1.22865 1.23038 0.97121 0.90511 0.87017 1.22687 1.00170 0.99817 1.07718 1.23064 0.87593 0.97658 0.89896 1.67625 1.36584 1.07815 1.13753 1.22683 0.97404 0.91520 0.95556 0.91923 0.94761 0.93911 0.92321 0.93458 0.92620 0.90433 0.91347 0.90839 0.91197 0.81248 0.83445 0.81006 0.90936 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.80 37.15 0.36 -2.26 16 2 C -0.12 -2.54 4.84 -26.73 -0.13 -2.66 16 3 C 0.17 3.93 1.15 -68.86 -0.08 3.85 16 4 H 0.04 0.97 7.19 -51.93 -0.37 0.60 16 5 C -0.55 -14.48 6.99 -34.44 -0.24 -14.72 16 6 H 0.08 2.23 6.82 -52.49 -0.36 1.88 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.89 21.54 24.41 -169.99 -4.15 17.39 16 10 H -0.28 -6.61 6.83 56.52 0.39 -6.23 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 13 N -0.51 -10.35 4.62 -224.68 -1.04 -11.38 16 14 C 0.04 0.84 5.08 -2.30 -0.01 0.83 16 15 C -0.14 -2.44 6.80 -24.59 -0.17 -2.60 16 16 C 0.07 1.39 3.17 -24.91 -0.08 1.32 16 17 H 0.11 2.18 6.92 -51.93 -0.36 1.82 16 18 O -0.28 -5.14 9.92 -18.07 -0.18 -5.32 16 19 C 0.51 8.65 8.49 -91.25 -0.77 7.88 16 20 N -0.56 -8.98 8.64 -14.73 -0.13 -9.11 16 21 C 0.19 2.20 11.30 -17.22 -0.19 2.01 16 22 C -0.28 -2.58 10.16 -39.32 -0.40 -2.98 16 23 C 0.18 1.94 11.30 -17.22 -0.19 1.75 16 24 N -0.53 -8.08 10.46 -14.73 -0.15 -8.23 16 25 C 0.06 1.12 6.09 -2.83 -0.02 1.11 16 26 H 0.06 1.10 7.75 -51.93 -0.40 0.69 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.22 7.14 -51.92 -0.37 0.85 16 30 H 0.05 1.07 3.22 -51.93 -0.17 0.91 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.08 1.68 5.98 -51.93 -0.31 1.37 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 40 H 0.08 1.64 7.06 -51.93 -0.37 1.27 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -31.07 316.38 -7.82 -38.89 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.69 Total: 3.26 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.02 Total: -4.48 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.55 Total: -54.50 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.18 Total: -5.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.15 Total: 17.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.07 -7.82 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.362 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds