Wall clock time and date at job start Mon Mar 30 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 H 1.09001 * 109.47118 * 305.34083 * 3 2 1 5 5 C 1.50690 * 109.47398 * 185.33334 * 3 2 1 6 6 H 1.08000 * 120.00244 * 274.69322 * 5 3 2 7 7 C 1.37881 * 119.99890 * 94.69758 * 5 3 2 8 8 N 1.31509 * 119.99792 * 184.81777 * 7 5 3 9 9 Si 1.86799 * 120.00083 * 4.81142 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.88729 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.88523 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.88762 * 9 7 5 13 13 N 1.46907 * 109.46714 * 65.33520 * 3 2 1 14 14 C 1.47437 * 111.00123 * 69.87374 * 13 3 2 15 15 C 1.54317 * 107.23198 * 123.25350 * 14 13 3 16 16 C 1.55142 * 103.02010 * 22.28868 * 15 14 13 17 17 H 1.09000 * 110.98808 * 82.47151 * 16 15 14 18 18 O 1.42892 * 110.99087 * 206.24954 * 16 15 14 19 19 C 1.35456 * 117.00557 * 268.54402 * 18 16 15 20 20 N 1.32320 * 119.18904 * 359.73028 * 19 18 16 21 21 C 1.32300 * 120.75272 * 179.75949 * 20 19 18 22 22 C 1.38594 * 119.18124 * 0.50532 * 21 20 19 23 23 C 1.38592 * 118.51502 * 359.75021 * 22 21 20 24 24 N 1.32296 * 119.17983 * 359.97438 * 23 22 21 25 25 C 1.47841 * 110.99796 * 190.72075 * 13 3 2 26 26 H 1.08999 * 109.47586 * 59.99059 * 1 2 3 27 27 H 1.08993 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46425 * 299.99540 * 1 2 3 29 29 H 1.09008 * 109.46425 * 240.00459 * 2 1 3 30 30 H 1.08990 * 109.47466 * 120.00749 * 2 1 3 31 31 H 0.97005 * 120.00052 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.89139 * 242.66530 * 14 13 3 33 33 H 1.09007 * 109.88533 * 3.85171 * 14 13 3 34 34 H 1.09005 * 110.70032 * 140.66614 * 15 14 13 35 35 H 1.09000 * 110.71008 * 263.89971 * 15 14 13 36 36 H 1.08007 * 120.41151 * 180.27553 * 21 20 19 37 37 H 1.07994 * 120.74074 * 179.72976 * 22 21 20 38 38 H 1.07996 * 120.41104 * 180.02562 * 23 22 21 39 39 H 1.09000 * 110.37582 * 332.46073 * 25 13 3 40 40 H 1.09000 * 110.38081 * 94.80754 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6008 1.9832 -0.8383 5 6 3.5412 1.4445 -0.1321 6 1 4.1608 1.3398 0.7464 7 6 4.1238 1.5800 -1.3744 8 7 5.4294 1.4870 -1.5020 9 14 3.0586 1.8957 -2.8761 10 1 2.7923 3.3516 -2.9968 11 1 3.7643 1.4190 -4.0926 12 1 1.7724 1.1674 -2.7326 13 7 1.6584 2.0967 1.2587 14 6 2.4174 1.5415 2.3942 15 6 3.1470 2.7183 3.0756 16 6 2.3111 3.9492 2.6362 17 1 1.4331 4.0714 3.2703 18 8 3.1080 5.1353 2.6358 19 6 3.1232 5.8664 3.7761 20 7 2.4098 5.4591 4.8134 21 6 2.4058 6.1468 5.9436 22 6 3.1525 7.3113 6.0287 23 6 3.8836 7.7109 4.9212 24 7 3.8472 6.9730 3.8237 25 6 1.9049 3.5530 1.1948 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 5.8393 1.5820 -2.3761 32 1 1.7351 1.0690 3.1009 33 1 3.1442 0.8133 2.0338 34 1 3.1287 2.6071 4.1598 35 1 4.1716 2.7987 2.7126 36 1 1.8249 5.8069 6.7883 37 1 3.1640 7.8945 6.9375 38 1 4.4764 8.6130 4.9539 39 1 2.7151 3.7706 0.4989 40 1 0.9974 4.0790 0.8982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:18 Heat of formation + Delta-G solvation = 29.106270 kcal Electronic energy + Delta-G solvation = -21900.405991 eV Core-core repulsion = 18716.342543 eV Total energy + Delta-G solvation = -3184.063448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18091 -39.09882 -37.36308 -33.92161 -33.71148 -32.01369 -31.31236 -29.44889 -28.11171 -26.61603 -24.74720 -23.86282 -22.76620 -21.36056 -20.70248 -19.07744 -18.44587 -17.58145 -17.15932 -16.12609 -15.81729 -15.36042 -15.03518 -14.36233 -14.26787 -13.74435 -13.52648 -13.37756 -13.04130 -12.78237 -12.50204 -12.28200 -11.84325 -11.76450 -11.19135 -11.08700 -11.01218 -10.94113 -10.87164 -10.58847 -10.41529 -10.17284 -9.94557 -9.83283 -9.62115 -9.23647 -9.19309 -8.93926 -8.57362 -7.27263 -6.12874 -4.14677 0.95128 0.98773 2.66904 3.26837 3.35574 3.37587 3.73413 3.98448 4.37829 4.46415 4.59893 4.92802 4.98088 5.00657 5.17140 5.21018 5.32970 5.51982 5.63042 5.80915 5.99988 6.02318 6.11424 6.12405 6.27405 6.30077 6.45500 6.56552 6.57154 6.70555 6.71283 6.81082 6.85893 7.00362 7.18943 7.23674 7.35049 7.56071 7.88258 8.10187 8.12211 8.44334 8.91163 9.50742 10.99542 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.004848 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.166424 B = 5773.686195 C = 6436.629730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C 0.171 3.829 4 H 0.041 0.959 5 C -0.546 4.546 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.515 5.515 14 C 0.049 3.951 15 C -0.150 4.150 16 C 0.087 3.913 17 H 0.098 0.902 18 O -0.273 6.273 19 C 0.510 3.490 20 N -0.566 5.566 21 C 0.186 3.814 22 C -0.282 4.282 23 C 0.187 3.813 24 N -0.529 5.529 25 C 0.053 3.947 26 H 0.039 0.961 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.169 0.831 37 H 0.147 0.853 38 H 0.173 0.827 39 H 0.075 0.925 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 8.534 13.954 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C 0.064 3.936 4 H 0.059 0.941 5 C -0.585 4.585 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.240 5.240 14 C -0.079 4.079 15 C -0.188 4.188 16 C 0.030 3.970 17 H 0.116 0.884 18 O -0.172 6.172 19 C 0.208 3.792 20 N -0.296 5.296 21 C 0.020 3.980 22 C -0.305 4.305 23 C 0.020 3.980 24 N -0.255 5.255 25 C -0.076 4.076 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.186 0.814 37 H 0.165 0.835 38 H 0.190 0.810 39 H 0.094 0.906 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.311 7.834 12.676 16.599 hybrid contribution 0.502 0.777 -0.105 0.931 sum -6.809 8.611 12.572 16.690 Atomic orbital electron populations 1.21771 0.97865 0.99236 1.01348 1.21669 0.93358 0.98574 1.00777 1.19908 0.94698 0.91213 0.87778 0.94095 1.21618 0.90359 1.51415 0.95105 0.90149 1.25033 0.94692 0.94033 0.98717 1.69914 1.09663 1.49152 1.24298 0.86970 0.81310 0.79244 0.82783 1.20074 1.21497 1.18582 1.64028 1.53489 1.01081 1.05375 1.22621 0.96017 0.96616 0.92635 1.23138 1.00661 0.94887 1.00163 1.23801 0.93057 0.80425 0.99696 0.88449 1.86203 1.65584 1.36729 1.28681 1.20880 0.86113 0.86651 0.85525 1.68138 1.24299 1.35574 1.01557 1.22982 0.92036 0.89166 0.93822 1.22673 1.04324 1.01351 1.02193 1.23093 0.92271 0.96281 0.86338 1.67650 1.22364 1.06182 1.29272 1.22852 1.00663 0.90506 0.93551 0.94190 0.94863 0.92238 0.92845 0.92986 0.92607 0.92278 0.90080 0.91565 0.90358 0.81389 0.83485 0.80972 0.90636 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.21 16 2 C -0.11 -2.19 5.35 -26.73 -0.14 -2.34 16 3 C 0.17 3.91 1.27 -68.87 -0.09 3.82 16 4 H 0.04 0.98 5.25 -51.93 -0.27 0.71 16 5 C -0.55 -14.59 7.16 -34.44 -0.25 -14.84 16 6 H 0.08 2.33 6.20 -52.49 -0.33 2.01 16 7 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 8 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.87 21.28 26.99 -169.99 -4.59 16.69 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.10 6.83 56.52 0.39 -5.72 16 13 N -0.51 -10.47 4.59 -224.68 -1.03 -11.50 16 14 C 0.05 0.94 5.41 -2.84 -0.02 0.92 16 15 C -0.15 -2.75 6.68 -24.91 -0.17 -2.92 16 16 C 0.09 1.58 3.21 -24.59 -0.08 1.51 16 17 H 0.10 1.66 7.13 -51.93 -0.37 1.29 16 18 O -0.27 -5.28 10.00 -18.06 -0.18 -5.46 16 19 C 0.51 8.64 8.49 -91.25 -0.77 7.87 16 20 N -0.57 -8.20 8.74 -14.73 -0.13 -8.33 16 21 C 0.19 1.89 11.30 -17.22 -0.19 1.69 16 22 C -0.28 -2.40 10.16 -39.32 -0.40 -2.80 16 23 C 0.19 1.97 11.30 -17.22 -0.19 1.78 16 24 N -0.53 -8.29 10.46 -14.73 -0.15 -8.45 16 25 C 0.05 1.05 6.21 -2.30 -0.01 1.04 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.03 7.76 -51.92 -0.40 0.63 16 29 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.05 1.06 7.04 -51.93 -0.37 0.69 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.74 5.14 -51.93 -0.27 1.47 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.08 1.76 7.10 -51.93 -0.37 1.39 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -31.62 322.71 -8.25 -39.86 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.75 Total: 2.78 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.05 Total: -4.36 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.54 Total: -54.38 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.18 Total: -5.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.62 -8.25 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.969 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds