Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 H 1.08996 * 109.47465 * 303.58852 * 3 2 1 5 5 C 1.50698 * 109.47250 * 183.58283 * 3 2 1 6 6 H 1.08002 * 120.00087 * 240.00739 * 5 3 2 7 7 C 1.37879 * 119.99922 * 59.99900 * 5 3 2 8 8 N 1.31512 * 119.99947 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99997 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47005 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46730 * 120.00185 * 9 7 5 12 12 H 1.48494 * 109.47228 * 240.00161 * 9 7 5 13 13 N 1.46901 * 109.46879 * 63.58601 * 3 2 1 14 14 C 1.48564 * 111.00016 * 180.22218 * 13 3 2 15 15 C 1.54375 * 104.59454 * 200.95703 * 14 13 3 16 16 C 1.54260 * 105.05921 * 23.85391 * 15 14 13 17 17 H 1.09005 * 110.32321 * 241.10038 * 16 15 14 18 18 O 1.42898 * 110.32382 * 118.99822 * 16 15 14 19 19 C 1.35676 * 117.00208 * 92.82823 * 18 16 15 20 20 C 1.39117 * 120.07683 * 179.72792 * 19 18 16 21 21 N 1.31971 * 119.91920 * 179.70959 * 20 19 18 22 22 C 1.32242 * 120.06378 * 0.55623 * 21 20 19 23 23 C 1.38188 * 120.14484 * 359.71748 * 22 21 20 24 24 N 1.32240 * 120.08632 * 359.97438 * 23 22 21 25 25 C 1.48561 * 111.00212 * 64.80106 * 13 3 2 26 26 H 1.09003 * 109.47118 * 54.78141 * 1 2 3 27 27 H 1.09001 * 109.46674 * 174.77199 * 1 2 3 28 28 H 1.08994 * 109.47142 * 294.77891 * 1 2 3 29 29 H 1.09001 * 109.47019 * 240.00240 * 2 1 3 30 30 H 1.08998 * 109.47236 * 120.00003 * 2 1 3 31 31 H 0.96998 * 119.99787 * 179.97438 * 8 7 5 32 32 H 1.09003 * 110.41233 * 82.17603 * 14 13 3 33 33 H 1.09004 * 110.41131 * 319.73582 * 14 13 3 34 34 H 1.09000 * 110.32578 * 264.95653 * 15 14 13 35 35 H 1.09007 * 110.40894 * 142.79255 * 15 14 13 36 36 H 1.07999 * 120.03988 * 359.96458 * 20 19 18 37 37 H 1.08000 * 119.92856 * 179.68897 * 22 21 20 38 38 H 1.08007 * 119.95717 * 179.97438 * 23 22 21 39 39 H 1.09000 * 110.41113 * 40.26297 * 25 13 3 40 40 H 1.08995 * 110.41192 * 277.81917 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6251 1.9746 -0.8560 5 6 3.5444 1.4435 -0.0888 6 1 4.1314 1.8945 0.6976 7 6 4.1713 0.8686 -1.1739 8 7 3.4564 0.3198 -2.1317 9 14 6.0360 0.8705 -1.2843 10 1 6.6020 1.5454 -0.0887 11 1 6.5298 -0.5288 -1.3425 12 1 6.4586 1.5959 -2.5092 13 7 1.6223 2.1095 1.2404 14 6 2.0961 3.5172 1.2736 15 6 2.0765 3.8990 2.7692 16 6 2.1860 2.5595 3.5264 17 1 1.3048 2.4032 4.1487 18 8 3.3688 2.5377 4.3280 19 6 3.2473 2.9452 5.6164 20 6 4.3570 2.9444 6.4554 21 7 4.2365 3.3468 7.7065 22 6 3.0604 3.7400 8.1656 23 6 1.9552 3.7366 7.3361 24 7 2.0705 3.3402 6.0798 25 6 2.2624 1.4809 2.4245 26 1 -0.3633 0.5927 -0.8396 27 1 -0.3633 -1.0234 -0.0936 28 1 -0.3633 0.4307 0.9330 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8974 -0.0843 -2.8952 32 1 1.4203 4.1592 0.7084 33 1 3.1089 3.5869 0.8766 34 1 1.1416 4.4003 3.0199 35 1 2.9251 4.5399 3.0091 36 1 5.3167 2.6187 6.0823 37 1 2.9632 4.0642 9.1912 38 1 0.9959 4.0580 7.7143 39 1 3.3012 1.2319 2.2077 40 1 1.7120 0.5898 2.7260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = 20.024123 kcal Electronic energy + Delta-G solvation = -21842.985081 eV Core-core repulsion = 18658.527802 eV Total energy + Delta-G solvation = -3184.457279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29829 -39.16199 -37.32046 -34.17012 -33.87593 -31.67030 -30.91531 -29.30317 -28.03655 -26.16605 -24.85220 -23.99942 -23.15237 -21.21118 -20.48462 -19.03139 -18.33659 -17.72931 -16.88750 -16.57078 -15.71364 -15.49801 -14.96529 -14.48201 -14.34589 -13.47319 -13.33112 -13.24282 -12.90788 -12.88374 -12.49642 -12.25377 -11.75237 -11.56195 -11.32980 -11.23992 -11.05485 -10.83523 -10.76237 -10.63522 -10.48343 -10.13744 -9.96472 -9.71384 -9.51130 -9.30804 -9.13414 -8.72445 -8.40361 -7.33829 -6.03666 -4.16157 0.73149 1.03166 2.95674 3.24265 3.33361 3.37106 3.59299 3.97010 4.16990 4.37142 4.43464 4.91024 5.06356 5.10126 5.18036 5.22344 5.29750 5.37848 5.49240 5.81122 6.00165 6.07356 6.19481 6.30710 6.42494 6.48815 6.50727 6.64736 6.65304 6.76536 6.99969 7.11535 7.12470 7.20176 7.30084 7.53452 7.65348 7.70541 7.86391 8.07839 8.12327 8.36866 8.92735 9.51157 10.96573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.004782 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.535129 B = 5853.841854 C = 6668.978308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.203 3.797 4 H 0.043 0.957 5 C -0.546 4.546 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.503 5.503 14 C 0.036 3.964 15 C -0.135 4.135 16 C 0.082 3.918 17 H 0.091 0.909 18 O -0.287 6.287 19 C 0.288 3.712 20 C 0.034 3.966 21 N -0.406 5.406 22 C -0.011 4.011 23 C 0.096 3.904 24 N -0.497 5.497 25 C 0.040 3.960 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.077 0.923 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 5.552 15.267 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.096 3.904 4 H 0.060 0.940 5 C -0.585 4.585 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.228 5.228 14 C -0.093 4.093 15 C -0.173 4.173 16 C 0.025 3.975 17 H 0.109 0.891 18 O -0.190 6.190 19 C 0.106 3.894 20 C -0.130 4.130 21 N -0.121 5.121 22 C -0.169 4.169 23 C -0.063 4.063 24 N -0.227 5.227 25 C -0.088 4.088 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.193 0.807 37 H 0.186 0.814 38 H 0.187 0.813 39 H 0.095 0.905 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.389 5.311 14.894 16.172 hybrid contribution 1.680 0.076 -0.229 1.698 sum -1.708 5.387 14.666 15.717 Atomic orbital electron populations 1.21708 0.98782 0.98467 1.00558 1.21577 0.92257 0.98968 1.02093 1.19439 0.93191 0.91330 0.86444 0.93954 1.21736 0.92554 1.37989 1.06189 0.92098 1.24895 0.97960 0.94887 0.95526 1.69882 1.34902 1.37772 1.09611 0.86629 0.86129 0.77806 0.78035 1.19792 1.20948 1.20999 1.65840 1.52038 1.01216 1.03684 1.22959 1.00663 0.92021 0.93629 1.22728 1.01671 0.96185 0.96761 1.23435 0.85446 0.97373 0.91218 0.89064 1.86423 1.37610 1.78256 1.16757 1.21101 0.90738 0.90562 0.87040 1.22930 0.98982 1.01981 0.89101 1.68421 1.25510 1.05626 1.12542 1.23490 0.89284 1.02152 1.01973 1.23518 1.00486 0.93976 0.88339 1.68140 1.24659 1.13767 1.16146 1.23044 1.01273 0.94985 0.89513 0.94069 0.95527 0.93613 0.88882 0.94984 0.92890 0.91383 0.91941 0.91059 0.91655 0.80739 0.81407 0.81293 0.90541 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 37.16 0.36 -2.40 16 2 C -0.11 -2.57 5.15 -26.73 -0.14 -2.71 16 3 C 0.20 4.87 1.84 -68.86 -0.13 4.74 16 4 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.55 -14.17 6.50 -34.44 -0.22 -14.40 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.37 11.30 55.43 0.63 -23.74 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.50 -10.41 4.89 -223.41 -1.09 -11.50 16 14 C 0.04 0.68 6.29 -2.18 -0.01 0.67 16 15 C -0.14 -2.21 6.81 -25.35 -0.17 -2.39 16 16 C 0.08 1.38 3.31 -25.35 -0.08 1.29 16 17 H 0.09 1.49 7.03 -51.93 -0.37 1.13 16 18 O -0.29 -4.74 9.74 -18.73 -0.18 -4.92 16 19 C 0.29 4.16 7.49 -16.94 -0.13 4.04 16 20 C 0.03 0.44 11.18 -17.17 -0.19 0.25 16 21 N -0.41 -4.93 10.49 -12.93 -0.14 -5.07 16 22 C -0.01 -0.11 11.21 -17.39 -0.20 -0.30 16 23 C 0.10 0.95 11.22 -17.39 -0.20 0.75 16 24 N -0.50 -6.68 8.84 -13.13 -0.12 -6.79 16 25 C 0.04 0.78 5.05 -2.18 -0.01 0.77 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 29 H 0.09 2.42 5.98 -51.93 -0.31 2.11 16 30 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.33 6.25 -51.93 -0.32 1.00 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.05 7.98 -51.92 -0.41 0.63 16 36 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.08 1.68 5.81 -51.93 -0.30 1.37 16 40 H 0.08 1.42 7.61 -51.93 -0.40 1.03 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -28.53 321.50 -7.98 -36.51 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.69 Total: 2.78 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.21 Total: -7.91 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.72 Total: -47.11 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.18 Total: -4.92 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.53 -7.98 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.536 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds