Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 H 1.08996 * 109.47465 * 303.58852 * 3 2 1 5 5 C 1.50698 * 109.47250 * 183.58283 * 3 2 1 6 6 H 1.08002 * 120.00087 * 240.00739 * 5 3 2 7 7 C 1.37879 * 119.99922 * 59.99900 * 5 3 2 8 8 N 1.31512 * 119.99947 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99997 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47005 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46730 * 120.00185 * 9 7 5 12 12 H 1.48494 * 109.47228 * 240.00161 * 9 7 5 13 13 N 1.46901 * 109.46879 * 63.58601 * 3 2 1 14 14 C 1.48564 * 111.00016 * 180.22218 * 13 3 2 15 15 C 1.54375 * 104.59454 * 200.95703 * 14 13 3 16 16 C 1.54260 * 105.05921 * 23.85391 * 15 14 13 17 17 H 1.09005 * 110.32321 * 241.10038 * 16 15 14 18 18 O 1.42898 * 110.32382 * 118.99822 * 16 15 14 19 19 C 1.35676 * 117.00208 * 92.82823 * 18 16 15 20 20 C 1.39117 * 120.07683 * 179.72792 * 19 18 16 21 21 N 1.31971 * 119.91920 * 179.70959 * 20 19 18 22 22 C 1.32242 * 120.06378 * 0.55623 * 21 20 19 23 23 C 1.38188 * 120.14484 * 359.71748 * 22 21 20 24 24 N 1.32240 * 120.08632 * 359.97438 * 23 22 21 25 25 C 1.48561 * 111.00212 * 64.80106 * 13 3 2 26 26 H 1.09003 * 109.47118 * 54.78141 * 1 2 3 27 27 H 1.09001 * 109.46674 * 174.77199 * 1 2 3 28 28 H 1.08994 * 109.47142 * 294.77891 * 1 2 3 29 29 H 1.09001 * 109.47019 * 240.00240 * 2 1 3 30 30 H 1.08998 * 109.47236 * 120.00003 * 2 1 3 31 31 H 0.96998 * 119.99787 * 179.97438 * 8 7 5 32 32 H 1.09003 * 110.41233 * 82.17603 * 14 13 3 33 33 H 1.09004 * 110.41131 * 319.73582 * 14 13 3 34 34 H 1.09000 * 110.32578 * 264.95653 * 15 14 13 35 35 H 1.09007 * 110.40894 * 142.79255 * 15 14 13 36 36 H 1.07999 * 120.03988 * 359.96458 * 20 19 18 37 37 H 1.08000 * 119.92856 * 179.68897 * 22 21 20 38 38 H 1.08007 * 119.95717 * 179.97438 * 23 22 21 39 39 H 1.09000 * 110.41113 * 40.26297 * 25 13 3 40 40 H 1.08995 * 110.41192 * 277.81917 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6251 1.9746 -0.8560 5 6 3.5444 1.4435 -0.0888 6 1 4.1314 1.8945 0.6976 7 6 4.1713 0.8686 -1.1739 8 7 3.4564 0.3198 -2.1317 9 14 6.0360 0.8705 -1.2843 10 1 6.6020 1.5454 -0.0887 11 1 6.5298 -0.5288 -1.3425 12 1 6.4586 1.5959 -2.5092 13 7 1.6223 2.1095 1.2404 14 6 2.0961 3.5172 1.2736 15 6 2.0765 3.8990 2.7692 16 6 2.1860 2.5595 3.5264 17 1 1.3048 2.4032 4.1487 18 8 3.3688 2.5377 4.3280 19 6 3.2473 2.9452 5.6164 20 6 4.3570 2.9444 6.4554 21 7 4.2365 3.3468 7.7065 22 6 3.0604 3.7400 8.1656 23 6 1.9552 3.7366 7.3361 24 7 2.0705 3.3402 6.0798 25 6 2.2624 1.4809 2.4245 26 1 -0.3633 0.5927 -0.8396 27 1 -0.3633 -1.0234 -0.0936 28 1 -0.3633 0.4307 0.9330 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8974 -0.0843 -2.8952 32 1 1.4203 4.1592 0.7084 33 1 3.1089 3.5869 0.8766 34 1 1.1416 4.4003 3.0199 35 1 2.9251 4.5399 3.0091 36 1 5.3167 2.6187 6.0823 37 1 2.9632 4.0642 9.1912 38 1 0.9959 4.0580 7.7143 39 1 3.3012 1.2319 2.2077 40 1 1.7120 0.5898 2.7260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = -0.193928 kcal Electronic energy + Delta-G solvation = -21843.861802 eV Core-core repulsion = 18658.527802 eV Total energy + Delta-G solvation = -3185.334000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24643 -40.51353 -38.75126 -35.68354 -35.02898 -33.58138 -31.95045 -30.81742 -29.50956 -28.02177 -25.86254 -24.99716 -24.88385 -22.81096 -21.86448 -20.83500 -19.49779 -18.78180 -18.43625 -17.70188 -17.16938 -16.86363 -16.20400 -16.06961 -15.49623 -15.01827 -14.82940 -14.73800 -14.45818 -14.20720 -13.91632 -13.61994 -13.32882 -13.05706 -12.83007 -12.67985 -12.57256 -12.43494 -12.35027 -12.30593 -11.95423 -11.72365 -11.60651 -11.51845 -11.31890 -11.01065 -10.45279 -10.20755 -9.68849 -9.13600 -8.06783 -6.26355 -0.12676 0.12427 1.34807 1.38732 1.48041 1.84705 2.39135 2.71930 3.04260 3.13910 3.38742 3.50009 3.60688 3.71237 3.75998 4.10571 4.25208 4.32758 4.49124 4.56478 4.58032 4.62683 4.72569 4.81704 4.89613 4.93077 4.96187 5.04152 5.18059 5.19966 5.29896 5.42283 5.43398 5.60291 5.74794 5.97718 6.11167 6.12342 6.24357 6.30604 6.42790 6.76307 6.91842 7.43288 8.90640 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.004782 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.535129 B = 5853.841854 C = 6668.978308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.209 3.791 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.281 1.281 13 N -0.499 5.499 14 C 0.034 3.966 15 C -0.122 4.122 16 C 0.096 3.904 17 H 0.101 0.899 18 O -0.307 6.307 19 C 0.261 3.739 20 C 0.023 3.977 21 N -0.423 5.423 22 C 0.005 3.995 23 C 0.099 3.901 24 N -0.514 5.514 25 C 0.042 3.958 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.180 0.820 37 H 0.210 0.790 38 H 0.212 0.788 39 H 0.047 0.953 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 6.488 17.882 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.028 0.972 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.175 4.175 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.223 5.223 14 C -0.095 4.095 15 C -0.160 4.160 16 C 0.039 3.961 17 H 0.118 0.882 18 O -0.212 6.212 19 C 0.080 3.920 20 C -0.139 4.139 21 N -0.138 5.138 22 C -0.154 4.154 23 C -0.060 4.060 24 N -0.244 5.244 25 C -0.086 4.086 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.197 0.803 37 H 0.227 0.773 38 H 0.228 0.772 39 H 0.065 0.935 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.166 6.246 17.510 19.052 hybrid contribution 1.878 -0.144 -0.856 2.069 sum -2.288 6.102 16.654 17.884 Atomic orbital electron populations 1.21572 0.96102 0.99761 1.00880 1.21422 0.94610 0.97927 1.00436 1.19202 0.91971 0.91730 0.86925 0.97198 1.21938 0.93779 1.37366 1.05794 0.92974 1.25551 1.01653 0.94893 0.95442 1.69997 1.36230 1.38536 1.10036 0.85740 0.81734 0.77755 0.77834 1.19827 1.20591 1.20639 1.65750 1.51849 1.01922 1.02809 1.22979 0.99193 0.91334 0.95945 1.22635 1.02875 0.96218 0.94249 1.23131 0.86177 0.96140 0.90663 0.88153 1.86365 1.37244 1.79419 1.18160 1.21176 0.91858 0.92625 0.86346 1.23002 0.98954 1.02485 0.89412 1.68496 1.27010 1.06312 1.12023 1.24248 0.88178 0.99454 1.03554 1.24258 1.02377 0.92401 0.86995 1.68111 1.24253 1.14038 1.17989 1.22965 0.99314 0.96261 0.90072 0.94586 0.93571 0.92505 0.91807 0.95224 0.92891 0.90462 0.94677 0.88958 0.91349 0.80337 0.77297 0.77185 0.93485 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.72 71.98 0.70 -4.28 16 2 C -0.11 -5.00 5.15 30.60 0.16 -4.84 16 3 C 0.21 10.36 1.84 44.17 0.08 10.45 16 4 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 5 C -0.55 -29.51 6.50 25.60 0.17 -29.34 16 6 H 0.05 2.85 5.68 -2.91 -0.02 2.83 16 7 C 0.02 1.35 5.30 84.66 0.45 1.80 16 8 N -0.91 -51.49 11.30 21.45 0.24 -51.24 16 9 Si 0.94 43.69 29.54 68.60 2.03 45.71 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.50 -20.88 4.89 -860.73 -4.21 -25.09 16 14 C 0.03 1.30 6.29 86.45 0.54 1.85 16 15 C -0.12 -3.86 6.81 31.49 0.21 -3.64 16 16 C 0.10 3.16 3.31 31.49 0.10 3.27 16 17 H 0.10 3.13 7.03 -2.38 -0.02 3.11 16 18 O -0.31 -10.15 9.74 -89.94 -0.88 -11.02 16 19 C 0.26 7.29 7.49 84.80 0.64 7.93 16 20 C 0.02 0.57 11.18 84.88 0.95 1.52 16 21 N -0.42 -9.35 10.49 -194.81 -2.04 -11.39 16 22 C 0.00 0.07 11.21 84.62 0.95 1.02 16 23 C 0.10 1.58 11.22 84.62 0.95 2.53 16 24 N -0.51 -12.60 8.84 -308.18 -2.72 -15.33 16 25 C 0.04 1.67 5.05 86.45 0.44 2.10 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.10 7.86 -2.39 -0.02 2.09 16 29 H 0.06 3.42 5.98 -2.39 -0.01 3.40 16 30 H 0.03 1.37 6.90 -2.39 -0.02 1.36 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.03 1.54 6.25 -2.38 -0.01 1.52 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.14 7.98 -2.38 -0.02 2.12 16 36 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.05 2.14 5.81 -2.39 -0.01 2.12 16 40 H 0.08 3.00 7.61 -2.39 -0.02 2.99 16 Total: -1.00 -63.25 321.50 -0.21 -63.46 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.03 Total: 14.55 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 6.34 Total: -9.64 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -8.73 Total: -103.06 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.88 Total: -11.02 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.25 -0.21 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.267 kcal (2) G-P(sol) polarization free energy of solvation -63.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds