Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 N 1.46897 * 109.47049 * 119.99668 * 2 1 3 5 5 C 1.46906 * 110.99439 * 154.99819 * 4 2 1 6 6 C 1.53004 * 109.46822 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47144 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99893 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00045 * 179.97438 * 7 6 5 10 10 C 1.39270 * 120.00181 * 185.60667 * 9 7 6 11 11 C 1.39676 * 119.57493 * 18.86973 * 10 9 7 12 12 C 1.38647 * 119.49846 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.66715 * 359.74169 * 12 11 10 14 14 C 1.40576 * 119.12889 * 0.50565 * 13 12 11 15 15 C 1.41336 * 119.78389 * 179.76817 * 14 13 12 16 16 H 1.07999 * 120.00309 * 7.00374 * 15 14 13 17 17 C 1.40029 * 119.99969 * 187.00093 * 15 14 13 18 18 N 1.30742 * 120.00396 * 181.89274 * 17 15 14 19 19 Si 1.86805 * 119.99629 * 1.89704 * 17 15 14 20 20 H 1.48504 * 109.46955 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47068 * 299.99751 * 19 17 15 22 22 H 1.48498 * 109.47442 * 59.99743 * 19 17 15 23 23 N 1.31901 * 119.57925 * 198.89825 * 10 9 7 24 24 H 1.09004 * 109.46848 * 300.00061 * 1 2 3 25 25 H 1.08995 * 109.47213 * 59.99724 * 1 2 3 26 26 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.46714 * 240.00209 * 2 1 3 28 28 H 1.09000 * 109.47548 * 59.99777 * 3 2 1 29 29 H 1.09000 * 109.47206 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47285 * 300.00196 * 3 2 1 31 31 H 1.00904 * 110.99714 * 31.05360 * 4 2 1 32 32 H 1.08993 * 109.46888 * 60.00726 * 5 4 2 33 33 H 1.09003 * 109.47335 * 299.99992 * 5 4 2 34 34 H 1.08999 * 109.46787 * 60.00194 * 6 5 4 35 35 H 1.08995 * 109.47310 * 300.00254 * 6 5 4 36 36 H 0.96998 * 120.00529 * 5.61400 * 9 7 6 37 37 H 1.08005 * 120.24629 * 0.02562 * 11 10 9 38 38 H 1.08003 * 120.66881 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.43386 * 180.24780 * 13 12 11 40 40 H 0.97002 * 119.99843 * 354.83631 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.3671 -1.2354 0.9806 6 6 3.8418 -1.9481 2.2485 7 6 5.2237 -2.5057 2.0239 8 8 5.7748 -2.3481 0.9551 9 7 5.8475 -3.1786 3.0110 10 6 7.1671 -3.5923 2.8458 11 6 7.9602 -2.9918 1.8654 12 6 9.2735 -3.4053 1.7020 13 6 9.7623 -4.4038 2.5254 14 6 8.9124 -4.9724 3.4901 15 6 9.3959 -5.9969 4.3353 16 1 10.4426 -6.2624 4.3178 17 6 8.5178 -6.6675 5.1955 18 7 8.9713 -7.5895 6.0039 19 14 6.6982 -6.2447 5.1880 20 1 5.9895 -7.0903 6.1820 21 1 6.5212 -4.8128 5.5396 22 1 6.1373 -6.4954 3.8360 23 7 7.6516 -4.5465 3.6168 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.3793 -1.4182 1.4847 32 1 4.0523 -0.4219 0.7425 33 1 3.3431 -1.9444 0.1530 34 1 3.1564 -2.7616 2.4862 35 1 3.8657 -1.2395 3.0764 36 1 5.3776 -3.3748 3.8365 37 1 7.5535 -2.2113 1.2393 38 1 9.9037 -2.9537 0.9501 39 1 10.7822 -4.7450 2.4256 40 1 9.9010 -7.8620 5.9559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262044870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = -20.649463 kcal Electronic energy + Delta-G solvation = -20881.680742 eV Core-core repulsion = 17695.459723 eV Total energy + Delta-G solvation = -3186.221018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21497 -38.33445 -37.45622 -34.61452 -33.55320 -33.11756 -31.13657 -29.99775 -28.60330 -27.50552 -25.37928 -23.69228 -21.87415 -21.44157 -20.86975 -19.77886 -18.36745 -17.33610 -16.62244 -16.40192 -15.43840 -15.19496 -15.06761 -14.81885 -14.35170 -13.82761 -13.80153 -13.51766 -12.98611 -12.79425 -12.64698 -12.39983 -12.25907 -12.23019 -11.92421 -11.77467 -11.47236 -11.35184 -11.18064 -10.97149 -10.80781 -10.38977 -10.02223 -9.66679 -9.28471 -9.15129 -8.69737 -8.57644 -7.83193 -7.41518 -7.26660 -4.79940 2.18103 2.62081 3.03697 3.17664 3.52264 3.62895 3.93502 4.00727 4.36401 4.61720 4.63806 4.68395 4.78748 4.95980 5.03243 5.11802 5.37595 5.42847 5.51165 5.53555 5.55788 5.61402 5.72840 5.83053 5.86188 5.90953 6.06046 6.07695 6.43656 6.49888 6.53763 6.77430 7.11091 7.13036 7.17465 7.42045 7.54808 7.58570 7.74898 8.09194 8.25994 8.43091 8.63262 9.37968 9.98256 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.003720 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.937427 B = 7525.226435 C = 8367.706705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.077 3.923 3 C -0.141 4.141 4 N -0.688 5.688 5 C 0.074 3.926 6 C -0.137 4.137 7 C 0.516 3.484 8 O -0.516 6.516 9 N -0.656 5.656 10 C 0.387 3.613 11 C -0.311 4.311 12 C -0.035 4.035 13 C -0.277 4.277 14 C 0.273 3.727 15 C -0.476 4.476 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.806 5.806 19 Si 1.158 2.842 20 H -0.332 1.332 21 H -0.284 1.284 22 H -0.295 1.295 23 N -0.599 5.599 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.340 0.660 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.408 0.592 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 12.137 -7.308 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.032 4.032 3 C -0.199 4.199 4 N -0.321 5.321 5 C -0.055 4.055 6 C -0.178 4.178 7 C 0.303 3.697 8 O -0.392 6.392 9 N -0.301 5.301 10 C 0.156 3.844 11 C -0.336 4.336 12 C -0.059 4.059 13 C -0.299 4.299 14 C 0.149 3.851 15 C -0.508 4.508 16 H 0.102 0.898 17 C -0.179 4.179 18 N -0.428 5.428 19 Si 0.994 3.006 20 H -0.266 1.266 21 H -0.213 1.213 22 H -0.223 1.223 23 N -0.325 5.325 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.244 0.756 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.683 12.095 -6.404 20.815 hybrid contribution 1.952 -0.346 -1.466 2.466 sum -13.731 11.749 -7.870 19.711 Atomic orbital electron populations 1.21976 0.94691 1.01909 1.02588 1.21497 0.94658 0.95697 0.91350 1.21800 1.01348 0.95176 1.01555 1.60530 1.03708 1.33158 1.34657 1.21700 0.90280 0.98410 0.95128 1.21597 0.93387 1.01634 1.01144 1.20579 0.87789 0.77891 0.83481 1.90630 1.66338 1.57145 1.25041 1.43354 1.12456 1.54938 1.19350 1.18122 0.83065 0.90845 0.92361 1.21520 0.95233 1.09684 1.07144 1.20936 0.94373 0.94573 0.96047 1.21608 1.00730 1.04769 1.02808 1.18274 0.85624 0.90905 0.90305 1.20727 0.97710 1.14246 1.18111 0.89842 1.27787 1.09697 0.91217 0.89169 1.70643 1.19506 1.23288 1.29356 0.81773 0.69913 0.74414 0.74474 1.26613 1.21252 1.22292 1.65921 1.16886 1.18137 1.31543 0.91699 0.91945 0.92772 0.93757 0.92003 0.92617 0.92730 0.84211 0.89956 0.94169 0.88748 0.87601 0.75612 0.84360 0.87583 0.87649 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.18 37.16 0.34 -0.66 16 2 C 0.08 0.64 3.22 -67.71 -0.22 0.42 16 3 C -0.14 -1.15 9.41 37.16 0.35 -0.80 16 4 N -0.69 -6.13 6.31 -106.72 -0.67 -6.81 16 5 C 0.07 0.80 4.77 -3.82 -0.02 0.78 16 6 C -0.14 -1.48 5.96 -27.88 -0.17 -1.64 16 7 C 0.52 8.29 7.67 -10.99 -0.08 8.20 16 8 O -0.52 -9.91 12.78 5.56 0.07 -9.84 16 9 N -0.66 -11.99 5.41 -11.40 -0.06 -12.05 16 10 C 0.39 8.90 7.51 -154.98 -1.16 7.73 16 11 C -0.31 -7.04 8.83 -38.89 -0.34 -7.39 16 12 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 13 C -0.28 -6.66 9.83 -38.66 -0.38 -7.04 16 14 C 0.27 7.23 6.39 -85.00 -0.54 6.68 16 15 C -0.48 -13.03 9.58 -37.73 -0.36 -13.39 16 16 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 17 C 0.04 1.15 5.52 -17.34 -0.10 1.06 16 18 N -0.81 -21.97 13.65 55.55 0.76 -21.21 16 19 Si 1.16 27.99 25.53 -169.99 -4.34 23.65 16 20 H -0.33 -7.92 7.11 56.52 0.40 -7.52 16 21 H -0.28 -6.58 6.70 56.52 0.38 -6.20 16 22 H -0.29 -7.23 7.10 56.52 0.40 -6.83 16 23 N -0.60 -15.25 4.58 -10.26 -0.05 -15.30 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.12 -51.93 -0.42 -0.10 16 27 H 0.04 0.40 7.80 -51.93 -0.40 -0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.34 2.58 8.35 -39.29 -0.33 2.25 16 32 H 0.08 1.00 7.39 -51.93 -0.38 0.61 16 33 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 6.49 8.83 -40.82 -0.36 6.13 16 37 H 0.14 3.04 5.33 -52.50 -0.28 2.76 16 38 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 39 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 40 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -30.81 330.24 -8.36 -39.17 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.96 Total: 4.62 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.08 Total: -7.22 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.02 Total: -55.37 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 27.99 SS G_CDS: -4.34 Total: 23.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.81 -8.36 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262044870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.521 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds