Wall clock time and date at job start Mon Mar 30 2020 02:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.09002 * 109.46691 * 304.99799 * 3 2 1 5 5 C 1.52998 * 109.47084 * 185.00350 * 3 2 1 6 6 N 1.46494 * 109.47277 * 184.99727 * 5 3 2 7 7 C 1.34775 * 120.00401 * 179.97438 * 6 5 3 8 8 O 1.21555 * 119.99874 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.00458 * 180.02562 * 7 6 5 10 10 C 1.39558 * 120.55771 * 353.87370 * 9 7 6 11 11 N 1.31663 * 120.56613 * 179.75366 * 10 9 7 12 12 C 1.31959 * 121.87804 * 0.53469 * 11 10 9 13 13 C 1.38311 * 121.07870 * 359.73312 * 12 11 10 14 14 C 1.38393 * 119.30796 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.85832 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47202 * 65.00232 * 3 2 1 17 17 C 1.36939 * 119.99897 * 274.99774 * 16 3 2 18 18 H 1.08008 * 119.99671 * 0.02562 * 17 16 3 19 19 C 1.38803 * 119.99893 * 179.72729 * 17 16 3 20 20 N 1.31622 * 120.00230 * 0.27169 * 19 17 16 21 21 Si 1.86808 * 119.99825 * 180.27873 * 19 17 16 22 22 H 1.48493 * 109.47267 * 89.99758 * 21 19 17 23 23 H 1.48503 * 109.46861 * 210.00045 * 21 19 17 24 24 H 1.48495 * 109.47043 * 329.99370 * 21 19 17 25 25 H 1.09000 * 109.47052 * 59.99489 * 1 2 3 26 26 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46648 * 300.00441 * 1 2 3 28 28 H 1.09000 * 109.46476 * 239.99683 * 2 1 3 29 29 H 1.09000 * 109.46715 * 120.00083 * 2 1 3 30 30 H 1.09004 * 109.47125 * 305.00034 * 5 3 2 31 31 H 1.09002 * 109.47687 * 64.99850 * 5 3 2 32 32 H 0.96998 * 120.00160 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.71801 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.46165 * 179.74690 * 12 11 10 35 35 H 1.08003 * 120.34396 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47157 * 263.69921 * 15 14 13 37 37 H 1.09004 * 109.46986 * 23.69578 * 15 14 13 38 38 H 1.09000 * 109.47856 * 143.69624 * 15 14 13 39 39 H 0.96996 * 119.99813 * 95.00162 * 16 3 2 40 40 H 0.96993 * 119.99786 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8166 -0.0061 7 6 5.3858 3.0628 -0.0860 8 8 6.1653 2.1461 -0.2579 9 6 5.8887 4.4477 0.0353 10 6 5.0002 5.5217 0.1051 11 7 5.4478 6.7547 0.2180 12 6 6.7385 7.0266 0.2591 13 6 7.6830 6.0186 0.1901 14 6 7.2642 4.7044 0.0767 15 6 8.2631 3.5788 -0.0006 16 7 1.6526 2.0975 1.2518 17 6 0.4158 2.6735 1.3688 18 1 -0.2742 2.6446 0.5383 19 6 0.0465 3.2891 2.5568 20 7 0.8871 3.3239 3.5690 21 14 -1.6436 4.0682 2.7190 22 1 -2.6062 3.0602 3.2313 23 1 -1.5732 5.2109 3.6648 24 1 -2.0948 4.5529 1.3899 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9955 0.8310 0.6658 31 1 3.8499 1.0376 -1.0961 32 1 3.4412 3.5482 0.1314 33 1 3.9363 5.3394 0.0705 34 1 7.0625 8.0529 0.3483 35 1 8.7363 6.2545 0.2252 36 1 8.4345 3.3161 -1.0445 37 1 9.2024 3.8948 0.4534 38 1 7.8753 2.7113 0.5334 39 1 2.2721 2.1231 1.9977 40 1 0.6291 3.7545 4.3990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267799781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:38 Heat of formation + Delta-G solvation = 0.463759 kcal Electronic energy + Delta-G solvation = -21443.839357 eV Core-core repulsion = 18258.533877 eV Total energy + Delta-G solvation = -3185.305480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64103 -38.83401 -36.75375 -34.21701 -33.47539 -32.45622 -31.46420 -29.76286 -28.36806 -27.39718 -24.60274 -23.61706 -22.66256 -21.88871 -20.44214 -19.89716 -17.77848 -17.10125 -16.64368 -16.22741 -15.46006 -15.25511 -14.86521 -14.70024 -14.12616 -13.76039 -13.67272 -13.18823 -13.01557 -12.84698 -12.70115 -12.68298 -12.43214 -12.13921 -11.97658 -11.44565 -10.98176 -10.91019 -10.74807 -10.45588 -10.22332 -10.04804 -9.90501 -9.57184 -9.55943 -9.26390 -9.23370 -8.97633 -8.66150 -7.06264 -5.83381 -3.13098 0.67997 1.16906 3.02263 3.39043 3.43592 3.45694 3.47101 3.87175 4.32879 4.52966 4.63607 4.67213 4.86809 5.03562 5.33023 5.36683 5.41663 5.50281 5.53870 5.60668 5.71030 5.81459 5.88801 5.93456 5.93785 6.06781 6.11965 6.34974 6.39755 6.51690 6.54582 6.57409 6.58824 6.83970 6.99366 7.22281 7.64860 7.81498 7.87478 8.33650 8.44248 9.45864 10.00029 10.35825 11.38337 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.005142 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.764994 B = 5443.985385 C = 6772.225691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.704 5.704 7 C 0.559 3.441 8 O -0.545 6.545 9 C -0.189 4.189 10 C 0.146 3.854 11 N -0.492 5.492 12 C 0.119 3.881 13 C -0.190 4.190 14 C 0.016 3.984 15 C -0.121 4.121 16 N -0.722 5.722 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.410 0.590 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 2.083 -8.259 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.009 4.009 6 N -0.356 5.356 7 C 0.345 3.655 8 O -0.425 6.425 9 C -0.194 4.194 10 C -0.013 4.013 11 N -0.200 5.200 12 C -0.037 4.037 13 C -0.210 4.210 14 C 0.007 3.993 15 C -0.177 4.177 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.247 0.753 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.306 2.192 -8.343 14.221 hybrid contribution -0.547 0.138 0.543 0.783 sum 10.758 2.330 -7.800 13.491 Atomic orbital electron populations 1.21771 0.95703 0.99650 1.03265 1.22065 0.96997 0.98331 1.00028 1.20579 0.89820 0.92919 0.91516 0.92762 1.21716 0.95747 0.82189 1.01262 1.45922 1.06729 1.11140 1.71777 1.17985 0.82687 0.87645 0.77141 1.90686 1.55538 1.45875 1.50380 1.20938 0.94710 0.95139 1.08594 1.23138 1.00295 0.87078 0.90771 1.67729 1.16854 1.22305 1.13153 1.22960 0.88321 0.99858 0.92530 1.22033 1.01485 0.92700 1.04766 1.20475 0.93327 0.95462 0.90026 1.21072 0.95922 0.97092 1.03622 1.42463 1.16820 1.65866 1.11262 1.19197 0.91911 1.28003 0.97937 0.90865 1.24732 0.98016 1.01519 0.96332 1.69656 1.35113 1.48951 1.03912 0.86267 0.84232 0.78761 0.77389 1.21771 1.21832 1.20718 0.94098 0.94872 0.89661 0.93839 0.92513 0.91609 0.91628 0.75275 0.81944 0.82470 0.84370 0.90208 0.92080 0.88170 0.78100 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.90 2.59 -67.93 -0.18 2.73 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.89 5.23 -4.05 -0.02 1.86 16 6 N -0.70 -11.51 5.34 -61.25 -0.33 -11.83 16 7 C 0.56 9.23 7.72 -12.33 -0.10 9.13 16 8 O -0.54 -9.85 13.50 5.32 0.07 -9.78 16 9 C -0.19 -2.82 5.89 -104.82 -0.62 -3.43 16 10 C 0.15 2.16 10.70 -17.13 -0.18 1.97 16 11 N -0.49 -7.14 10.35 -12.91 -0.13 -7.27 16 12 C 0.12 1.38 11.17 -17.47 -0.20 1.18 16 13 C -0.19 -2.06 9.78 -39.50 -0.39 -2.44 16 14 C 0.02 0.20 5.95 -103.91 -0.62 -0.41 16 15 C -0.12 -1.43 8.85 36.00 0.32 -1.11 16 16 N -0.72 -16.07 4.51 -53.43 -0.24 -16.31 16 17 C -0.24 -5.97 7.75 -15.06 -0.12 -6.09 16 18 H 0.07 1.79 7.32 -52.48 -0.38 1.40 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 21 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.77 5.99 -51.92 -0.31 1.46 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.41 6.77 6.24 -40.82 -0.25 6.52 16 33 H 0.16 2.31 6.47 -52.49 -0.34 1.97 16 34 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.10 1.42 5.95 -51.93 -0.31 1.11 16 39 H 0.38 9.45 7.80 -40.82 -0.32 9.13 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -29.39 330.90 -7.63 -37.02 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -5.70 Total: 14.23 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.00 Total: -1.57 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.02 Total: -61.26 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.39 -7.63 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267799781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.489 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds