Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.09002 * 109.46691 * 304.99799 * 3 2 1 5 5 C 1.52998 * 109.47084 * 185.00350 * 3 2 1 6 6 N 1.46494 * 109.47277 * 184.99727 * 5 3 2 7 7 C 1.34775 * 120.00401 * 179.97438 * 6 5 3 8 8 O 1.21555 * 119.99874 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.00458 * 180.02562 * 7 6 5 10 10 C 1.39558 * 120.55771 * 353.87370 * 9 7 6 11 11 N 1.31663 * 120.56613 * 179.75366 * 10 9 7 12 12 C 1.31959 * 121.87804 * 0.53469 * 11 10 9 13 13 C 1.38311 * 121.07870 * 359.73312 * 12 11 10 14 14 C 1.38393 * 119.30796 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.85832 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47202 * 65.00232 * 3 2 1 17 17 C 1.36939 * 119.99897 * 274.99774 * 16 3 2 18 18 H 1.08008 * 119.99671 * 0.02562 * 17 16 3 19 19 C 1.38803 * 119.99893 * 179.72729 * 17 16 3 20 20 N 1.31622 * 120.00230 * 0.27169 * 19 17 16 21 21 Si 1.86808 * 119.99825 * 180.27873 * 19 17 16 22 22 H 1.48493 * 109.47267 * 89.99758 * 21 19 17 23 23 H 1.48503 * 109.46861 * 210.00045 * 21 19 17 24 24 H 1.48495 * 109.47043 * 329.99370 * 21 19 17 25 25 H 1.09000 * 109.47052 * 59.99489 * 1 2 3 26 26 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46648 * 300.00441 * 1 2 3 28 28 H 1.09000 * 109.46476 * 239.99683 * 2 1 3 29 29 H 1.09000 * 109.46715 * 120.00083 * 2 1 3 30 30 H 1.09004 * 109.47125 * 305.00034 * 5 3 2 31 31 H 1.09002 * 109.47687 * 64.99850 * 5 3 2 32 32 H 0.96998 * 120.00160 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.71801 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.46165 * 179.74690 * 12 11 10 35 35 H 1.08003 * 120.34396 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47157 * 263.69921 * 15 14 13 37 37 H 1.09004 * 109.46986 * 23.69578 * 15 14 13 38 38 H 1.09000 * 109.47856 * 143.69624 * 15 14 13 39 39 H 0.96996 * 119.99813 * 95.00162 * 16 3 2 40 40 H 0.96993 * 119.99786 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8166 -0.0061 7 6 5.3858 3.0628 -0.0860 8 8 6.1653 2.1461 -0.2579 9 6 5.8887 4.4477 0.0353 10 6 5.0002 5.5217 0.1051 11 7 5.4478 6.7547 0.2180 12 6 6.7385 7.0266 0.2591 13 6 7.6830 6.0186 0.1901 14 6 7.2642 4.7044 0.0767 15 6 8.2631 3.5788 -0.0006 16 7 1.6526 2.0975 1.2518 17 6 0.4158 2.6735 1.3688 18 1 -0.2742 2.6446 0.5383 19 6 0.0465 3.2891 2.5568 20 7 0.8871 3.3239 3.5690 21 14 -1.6436 4.0682 2.7190 22 1 -2.6062 3.0602 3.2313 23 1 -1.5732 5.2109 3.6648 24 1 -2.0948 4.5529 1.3899 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9955 0.8310 0.6658 31 1 3.8499 1.0376 -1.0961 32 1 3.4412 3.5482 0.1314 33 1 3.9363 5.3394 0.0705 34 1 7.0625 8.0529 0.3483 35 1 8.7363 6.2545 0.2252 36 1 8.4345 3.3161 -1.0445 37 1 9.2024 3.8948 0.4534 38 1 7.8753 2.7113 0.5334 39 1 2.2721 2.1231 1.9977 40 1 0.6291 3.7545 4.3990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267799781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = -18.879308 kcal Electronic energy + Delta-G solvation = -21444.678136 eV Core-core repulsion = 18258.533877 eV Total energy + Delta-G solvation = -3186.144259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73656 -40.05442 -38.27380 -35.53395 -34.64542 -34.19001 -32.53847 -31.47177 -29.65848 -28.58667 -25.93879 -25.19686 -24.01194 -22.96701 -21.76506 -21.31481 -19.34546 -18.63464 -17.75905 -17.21513 -16.98489 -16.56291 -16.23727 -15.84896 -15.77663 -15.14535 -14.91413 -14.64957 -14.52001 -14.12971 -13.80571 -13.71269 -13.63205 -13.42615 -13.04151 -12.88609 -12.79194 -12.76603 -12.33696 -12.09526 -11.87105 -11.61841 -11.32707 -11.06770 -10.88118 -10.61256 -10.37649 -10.24679 -9.96063 -8.97162 -7.87305 -5.14245 -0.35655 0.18264 1.50365 1.51692 1.58539 1.82487 2.18602 2.60339 2.81841 3.33381 3.47188 3.66403 3.72613 3.84156 3.90304 3.95837 4.04033 4.38947 4.44350 4.48772 4.57680 4.58581 4.67881 4.76017 4.79671 4.85223 4.88441 5.10274 5.12342 5.16619 5.22207 5.37370 5.48835 5.57896 5.62339 5.64393 5.73471 6.32944 6.50590 6.86818 7.14271 7.41089 8.12793 8.37306 9.35592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.005142 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.764994 B = 5443.985385 C = 6772.225691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.059 0.941 5 C 0.123 3.877 6 N -0.707 5.707 7 C 0.557 3.443 8 O -0.564 6.564 9 C -0.208 4.208 10 C 0.134 3.866 11 N -0.517 5.517 12 C 0.119 3.881 13 C -0.175 4.175 14 C 0.004 3.996 15 C -0.115 4.115 16 N -0.728 5.728 17 C -0.215 4.215 18 H 0.081 0.919 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.957 3.043 22 H -0.294 1.294 23 H -0.304 1.304 24 H -0.268 1.268 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.408 0.592 33 H 0.156 0.844 34 H 0.195 0.805 35 H 0.180 0.820 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.372 0.628 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.733 2.579 -9.809 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.054 3.946 4 H 0.077 0.923 5 C -0.001 4.001 6 N -0.357 5.357 7 C 0.345 3.655 8 O -0.446 6.446 9 C -0.214 4.214 10 C -0.025 4.025 11 N -0.227 5.227 12 C -0.037 4.037 13 C -0.194 4.194 14 C -0.005 4.005 15 C -0.171 4.171 16 N -0.368 5.368 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.788 3.212 22 H -0.222 1.222 23 H -0.231 1.231 24 H -0.193 1.193 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.173 0.827 34 H 0.212 0.788 35 H 0.197 0.803 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.204 0.796 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.472 2.665 -9.953 16.177 hybrid contribution -0.821 -0.031 0.931 1.242 sum 11.651 2.634 -9.022 14.969 Atomic orbital electron populations 1.21702 0.96003 1.00584 1.01785 1.21980 0.96611 0.97232 1.01111 1.20741 0.90902 0.93410 0.89514 0.92254 1.21621 0.94398 0.82295 1.01776 1.45936 1.06910 1.10988 1.71873 1.18278 0.82382 0.88340 0.76495 1.90673 1.55837 1.46661 1.51409 1.20891 0.95913 0.94006 1.10553 1.23053 1.00162 0.87541 0.91695 1.67741 1.18825 1.21970 1.14145 1.23644 0.87344 1.01905 0.90766 1.22438 1.03429 0.91181 1.02360 1.20799 0.92670 0.97062 0.89931 1.21017 0.96764 0.95757 1.03610 1.42581 1.15789 1.66103 1.12358 1.19498 0.92433 1.25382 0.97372 0.90124 1.25354 1.00853 1.03560 0.96656 1.69804 1.36731 1.51170 1.04234 0.85368 0.81020 0.77395 0.77385 1.22175 1.23111 1.19331 0.93153 0.92874 0.93347 0.90530 0.93587 0.92773 0.89761 0.75503 0.82708 0.78798 0.80286 0.90016 0.89003 0.90868 0.79625 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.11 5.61 30.59 0.17 -3.93 16 3 C 0.16 5.70 2.59 44.99 0.12 5.82 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 3.98 5.23 86.38 0.45 4.43 16 6 N -0.71 -23.39 5.34 -465.99 -2.49 -25.87 16 7 C 0.56 18.64 7.72 86.79 0.67 19.32 16 8 O -0.56 -20.56 13.50 -3.89 -0.05 -20.61 16 9 C -0.21 -6.22 5.89 -19.99 -0.12 -6.34 16 10 C 0.13 4.00 10.70 85.04 0.91 4.91 16 11 N -0.52 -14.58 10.35 -194.76 -2.01 -16.60 16 12 C 0.12 2.42 11.17 84.69 0.95 3.37 16 13 C -0.17 -3.22 9.78 22.32 0.22 -3.00 16 14 C 0.00 0.10 5.95 -19.41 -0.12 -0.02 16 15 C -0.12 -2.55 8.85 71.23 0.63 -1.92 16 16 N -0.73 -32.69 4.51 -322.95 -1.46 -34.14 16 17 C -0.22 -10.74 7.75 84.03 0.65 -10.09 16 18 H 0.08 3.87 7.32 -2.91 -0.02 3.85 16 19 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 20 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 21 Si 0.96 44.65 29.55 68.60 2.03 46.67 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.96 5.99 -2.38 -0.01 1.95 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.41 13.86 6.24 -92.71 -0.58 13.28 16 33 H 0.16 4.64 6.47 -2.91 -0.02 4.62 16 34 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.42 8.07 -2.38 -0.02 1.40 16 38 H 0.07 2.05 5.95 -2.39 -0.01 2.04 16 39 H 0.37 18.74 7.80 -92.71 -0.72 18.02 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -64.55 330.90 1.72 -62.83 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.24 Total: 39.47 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.66 Total: 5.01 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -5.68 Total: -133.37 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.55 1.72 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267799781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.950 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds