Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46664 * 2 1 4 4 C 1.52995 * 109.47580 * 119.99826 * 2 1 3 5 5 N 1.46508 * 109.46937 * 65.00111 * 4 2 1 6 6 C 1.34774 * 120.00093 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.46783 * 180.02562 * 8 6 5 10 10 C 1.38823 * 119.99790 * 179.97438 * 9 8 6 11 11 C 1.39803 * 119.58538 * 0.02562 * 10 9 8 12 12 C 1.38590 * 119.48949 * 180.02562 * 11 10 9 13 13 C 1.38384 * 118.68545 * 359.97438 * 12 11 10 14 14 C 1.40552 * 119.14736 * 0.02562 * 13 12 11 15 15 C 1.41323 * 119.78413 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99816 * 7.19465 * 15 14 13 17 17 C 1.40028 * 119.99880 * 187.18977 * 15 14 13 18 18 N 1.30747 * 120.00036 * 7.20797 * 17 15 14 19 19 Si 1.86800 * 119.99586 * 186.92785 * 17 15 14 20 20 H 1.48494 * 109.47153 * 265.29181 * 19 17 15 21 21 H 1.48497 * 109.47286 * 25.29783 * 19 17 15 22 22 H 1.48511 * 109.46585 * 145.29571 * 19 17 15 23 23 N 1.31951 * 119.58769 * 180.29685 * 10 9 8 24 24 H 1.08999 * 109.47128 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47524 * 299.99470 * 1 2 3 26 26 H 1.09005 * 109.47453 * 60.00137 * 1 2 3 27 27 H 1.08997 * 109.47171 * 240.00426 * 2 1 3 28 28 H 1.09007 * 109.47106 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47605 * 300.00180 * 3 2 1 30 30 H 1.09003 * 109.47377 * 60.00395 * 3 2 1 31 31 H 1.09000 * 109.47293 * 305.01014 * 4 2 1 32 32 H 1.08991 * 109.47501 * 184.99904 * 4 2 1 33 33 H 0.97002 * 119.99353 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.47415 * 59.99771 * 8 6 5 35 35 H 1.09003 * 109.47102 * 299.99737 * 8 6 5 36 36 H 0.96998 * 120.00236 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.25046 * 0.04363 * 11 10 9 38 38 H 1.08008 * 120.65600 * 179.97438 * 12 11 10 39 39 H 1.08000 * 120.42520 * 180.02562 * 13 12 11 40 40 H 0.96998 * 119.99668 * 179.72260 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 1.9957 -2.9680 2.1911 7 8 2.6249 -2.5509 3.1403 8 6 1.5975 -4.4202 2.1304 9 7 2.0848 -5.1105 3.3272 10 6 1.8369 -6.4660 3.4959 11 6 1.1219 -7.1639 2.5181 12 6 0.8752 -8.5169 2.6888 13 6 1.3484 -9.1395 3.8305 14 6 2.0609 -8.3835 4.7772 15 6 2.5498 -9.0056 5.9482 16 1 2.4785 -10.0774 6.0602 17 6 3.1267 -8.2323 6.9631 18 7 3.0871 -6.9273 6.8932 19 14 3.9460 -9.0654 8.4206 20 1 2.9738 -9.1775 9.5374 21 1 4.4023 -10.4215 8.0234 22 1 5.1133 -8.2590 8.8595 23 7 2.2745 -7.0783 4.5797 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.1299 1.4427 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2618 2.1369 32 1 3.1263 -0.6443 1.2951 33 1 1.1489 -2.4663 0.4315 34 1 2.0328 -4.8796 1.2430 35 1 0.5112 -4.4975 2.0838 36 1 2.5800 -4.6203 4.0020 37 1 0.7649 -6.6526 1.6363 38 1 0.3244 -9.0743 1.9455 39 1 1.1725 -10.1928 3.9919 40 1 3.4832 -6.3917 7.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = -11.750402 kcal Electronic energy + Delta-G solvation = -20603.244990 eV Core-core repulsion = 17417.409864 eV Total energy + Delta-G solvation = -3185.835126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82984 -38.14734 -36.92399 -34.69689 -33.42964 -33.13379 -30.45859 -29.43893 -27.56177 -27.36864 -25.38219 -25.01587 -21.53464 -20.86805 -20.69367 -19.98102 -17.44068 -17.34096 -16.38442 -15.84392 -15.63970 -15.05099 -14.76462 -14.63982 -14.12157 -13.97571 -13.65490 -13.36162 -13.06126 -13.04472 -12.62269 -12.55745 -12.37327 -11.88987 -11.76676 -11.50368 -11.29048 -11.17384 -11.08965 -10.94085 -10.63144 -10.42396 -9.92520 -9.80754 -9.45170 -9.18322 -8.87958 -7.90372 -7.45118 -6.52628 -6.31366 -4.42365 2.66747 2.91248 3.00777 3.15689 3.19313 3.26373 3.32988 4.03054 4.31166 4.38770 4.50931 4.65488 4.82566 4.87324 5.16763 5.25274 5.32687 5.45525 5.52404 5.56049 5.58145 5.63724 5.73265 5.88085 5.94182 6.09864 6.16063 6.31489 6.54778 6.87965 6.89267 6.94318 7.28782 7.36800 7.62209 7.82850 7.92502 8.19725 8.22564 8.38202 8.74318 8.84354 9.14671 10.28039 10.44561 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.003298 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.502186 B = 8486.767652 C = 9404.335783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.123 3.877 5 N -0.733 5.733 6 C 0.508 3.492 7 O -0.529 6.529 8 C 0.125 3.875 9 N -0.729 5.729 10 C 0.415 3.585 11 C -0.372 4.372 12 C -0.031 4.031 13 C -0.316 4.316 14 C 0.295 3.705 15 C -0.436 4.436 16 H 0.084 0.916 17 C 0.072 3.928 18 N -0.715 5.715 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.261 1.261 22 H -0.276 1.276 23 N -0.533 5.533 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.407 0.593 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 12.878 -12.703 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.000 4.000 5 N -0.387 5.387 6 C 0.294 3.706 7 O -0.404 6.404 8 C -0.004 4.004 9 N -0.369 5.369 10 C 0.175 3.825 11 C -0.398 4.398 12 C -0.055 4.055 13 C -0.339 4.339 14 C 0.168 3.832 15 C -0.468 4.468 16 H 0.102 0.898 17 C -0.153 4.153 18 N -0.336 5.336 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.185 1.185 22 H -0.202 1.202 23 N -0.254 5.254 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.698 13.857 -11.414 18.154 hybrid contribution -0.249 -0.725 -0.236 0.802 sum -2.947 13.132 -11.650 17.801 Atomic orbital electron populations 1.21882 0.94614 1.02096 1.02142 1.21360 0.96536 0.96946 0.97888 1.21766 1.01315 0.94986 1.02245 1.21420 1.00150 0.80415 0.98063 1.45932 1.58937 1.09739 1.24056 1.20868 0.79031 0.88570 0.82096 1.90719 1.39126 1.77626 1.32903 1.20747 1.00092 0.88155 0.91432 1.43843 1.63677 1.06859 1.22570 1.18404 0.89867 0.83891 0.90384 1.20573 1.19764 0.96001 1.03431 1.20581 0.95691 0.93656 0.95578 1.21538 1.13143 0.99696 0.99564 1.18187 0.87228 0.86390 0.91401 1.19573 1.33176 0.94751 0.99259 0.89810 1.26050 0.95207 0.94690 0.99377 1.70091 1.29130 1.05279 1.29087 0.86371 0.79273 0.80394 0.81068 1.19626 1.18529 1.20150 1.68105 1.27895 1.10726 1.18702 0.92450 0.92337 0.92402 0.90479 0.92303 0.92177 0.92280 0.91420 0.91475 0.76475 0.90085 0.90092 0.75443 0.89259 0.88898 0.88656 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.07 37.15 0.34 -0.59 16 2 C -0.11 -0.71 2.96 -90.62 -0.27 -0.98 16 3 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 4 C 0.12 1.18 5.07 -4.04 -0.02 1.16 16 5 N -0.73 -7.59 5.28 -60.29 -0.32 -7.91 16 6 C 0.51 7.60 7.90 -10.98 -0.09 7.51 16 7 O -0.53 -10.21 15.67 5.56 0.09 -10.12 16 8 C 0.13 1.97 5.36 -5.19 -0.03 1.94 16 9 N -0.73 -15.81 5.69 -61.57 -0.35 -16.16 16 10 C 0.41 10.46 7.65 -155.32 -1.19 9.27 16 11 C -0.37 -8.54 9.34 -38.87 -0.36 -8.90 16 12 C -0.03 -0.71 10.15 -39.40 -0.40 -1.11 16 13 C -0.32 -8.11 9.83 -38.66 -0.38 -8.49 16 14 C 0.29 8.41 6.52 -85.00 -0.55 7.85 16 15 C -0.44 -12.08 9.13 -37.74 -0.34 -12.42 16 16 H 0.08 2.17 7.86 -52.49 -0.41 1.75 16 17 C 0.07 1.91 5.47 -17.34 -0.09 1.82 16 18 N -0.71 -19.84 11.56 55.55 0.64 -19.20 16 19 Si 0.90 19.28 29.57 -169.99 -5.03 14.25 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 N -0.53 -15.29 7.99 -10.33 -0.08 -15.38 16 24 H 0.06 0.34 7.18 -51.93 -0.37 -0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 2.95 7.66 -40.82 -0.31 2.64 16 34 H 0.08 1.14 7.92 -51.93 -0.41 0.72 16 35 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 36 H 0.41 9.60 7.56 -40.82 -0.31 9.29 16 37 H 0.09 1.74 6.68 -52.49 -0.35 1.39 16 38 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -33.14 337.02 -8.96 -42.10 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.94 Total: 10.81 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.05 Total: -3.47 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.11 Total: -58.64 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.14 -8.96 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.345 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds