Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46664 * 2 1 4 4 C 1.52995 * 109.47580 * 119.99826 * 2 1 3 5 5 N 1.46508 * 109.46937 * 65.00111 * 4 2 1 6 6 C 1.34774 * 120.00093 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.46783 * 180.02562 * 8 6 5 10 10 C 1.38823 * 119.99790 * 179.97438 * 9 8 6 11 11 C 1.39803 * 119.58538 * 0.02562 * 10 9 8 12 12 C 1.38590 * 119.48949 * 180.02562 * 11 10 9 13 13 C 1.38384 * 118.68545 * 359.97438 * 12 11 10 14 14 C 1.40552 * 119.14736 * 0.02562 * 13 12 11 15 15 C 1.41323 * 119.78413 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99816 * 7.19465 * 15 14 13 17 17 C 1.40028 * 119.99880 * 187.18977 * 15 14 13 18 18 N 1.30747 * 120.00036 * 7.20797 * 17 15 14 19 19 Si 1.86800 * 119.99586 * 186.92785 * 17 15 14 20 20 H 1.48494 * 109.47153 * 265.29181 * 19 17 15 21 21 H 1.48497 * 109.47286 * 25.29783 * 19 17 15 22 22 H 1.48511 * 109.46585 * 145.29571 * 19 17 15 23 23 N 1.31951 * 119.58769 * 180.29685 * 10 9 8 24 24 H 1.08999 * 109.47128 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47524 * 299.99470 * 1 2 3 26 26 H 1.09005 * 109.47453 * 60.00137 * 1 2 3 27 27 H 1.08997 * 109.47171 * 240.00426 * 2 1 3 28 28 H 1.09007 * 109.47106 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47605 * 300.00180 * 3 2 1 30 30 H 1.09003 * 109.47377 * 60.00395 * 3 2 1 31 31 H 1.09000 * 109.47293 * 305.01014 * 4 2 1 32 32 H 1.08991 * 109.47501 * 184.99904 * 4 2 1 33 33 H 0.97002 * 119.99353 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.47415 * 59.99771 * 8 6 5 35 35 H 1.09003 * 109.47102 * 299.99737 * 8 6 5 36 36 H 0.96998 * 120.00236 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.25046 * 0.04363 * 11 10 9 38 38 H 1.08008 * 120.65600 * 179.97438 * 12 11 10 39 39 H 1.08000 * 120.42520 * 180.02562 * 13 12 11 40 40 H 0.96998 * 119.99668 * 179.72260 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 1.9957 -2.9680 2.1911 7 8 2.6249 -2.5509 3.1403 8 6 1.5975 -4.4202 2.1304 9 7 2.0848 -5.1105 3.3272 10 6 1.8369 -6.4660 3.4959 11 6 1.1219 -7.1639 2.5181 12 6 0.8752 -8.5169 2.6888 13 6 1.3484 -9.1395 3.8305 14 6 2.0609 -8.3835 4.7772 15 6 2.5498 -9.0056 5.9482 16 1 2.4785 -10.0774 6.0602 17 6 3.1267 -8.2323 6.9631 18 7 3.0871 -6.9273 6.8932 19 14 3.9460 -9.0654 8.4206 20 1 2.9738 -9.1775 9.5374 21 1 4.4023 -10.4215 8.0234 22 1 5.1133 -8.2590 8.8595 23 7 2.2745 -7.0783 4.5797 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.1299 1.4427 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2618 2.1369 32 1 3.1263 -0.6443 1.2951 33 1 1.1489 -2.4663 0.4315 34 1 2.0328 -4.8796 1.2430 35 1 0.5112 -4.4975 2.0838 36 1 2.5800 -4.6203 4.0020 37 1 0.7649 -6.6526 1.6363 38 1 0.3244 -9.0743 1.9455 39 1 1.1725 -10.1928 3.9919 40 1 3.4832 -6.3917 7.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = -34.320644 kcal Electronic energy + Delta-G solvation = -20604.223710 eV Core-core repulsion = 17417.409864 eV Total energy + Delta-G solvation = -3186.813845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03978 -39.97498 -37.77329 -36.39742 -35.01892 -34.34427 -32.34248 -31.19938 -28.69128 -28.03955 -27.26383 -26.14839 -23.41276 -22.39886 -21.69422 -21.09582 -19.27190 -18.78529 -17.47297 -17.23426 -16.90322 -16.49522 -16.35232 -15.93583 -15.73651 -15.12235 -14.83659 -14.75117 -14.46837 -14.15217 -13.98798 -13.59299 -13.51968 -13.26198 -12.92170 -12.87627 -12.69899 -12.58997 -12.22071 -12.04779 -11.86453 -11.76617 -11.64464 -11.29096 -11.06463 -10.70503 -10.18144 -9.85017 -9.41618 -8.37434 -8.23311 -6.46187 1.06644 1.35456 1.40462 1.49347 1.54678 1.58613 1.92751 2.24826 2.75908 2.92409 3.70047 3.79877 3.94392 4.04945 4.12412 4.30328 4.44283 4.45004 4.58476 4.66658 4.76921 4.78732 4.83858 4.98909 4.99958 5.02865 5.04148 5.11000 5.22368 5.29318 5.34832 5.40844 5.48172 5.71970 5.97719 6.05537 6.23165 6.39413 6.57446 6.80700 6.92240 7.13167 7.19219 8.34526 8.51738 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.003298 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.502186 B = 8486.767652 C = 9404.335783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.146 4.146 4 C 0.121 3.879 5 N -0.707 5.707 6 C 0.510 3.490 7 O -0.580 6.580 8 C 0.121 3.879 9 N -0.734 5.734 10 C 0.394 3.606 11 C -0.361 4.361 12 C -0.027 4.027 13 C -0.343 4.343 14 C 0.260 3.740 15 C -0.475 4.475 16 H 0.089 0.911 17 C 0.025 3.975 18 N -0.759 5.759 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.254 1.254 22 H -0.272 1.272 23 N -0.575 5.575 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.393 0.607 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 13.045 -14.850 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.003 4.003 5 N -0.361 5.361 6 C 0.296 3.704 7 O -0.460 6.460 8 C -0.006 4.006 9 N -0.372 5.372 10 C 0.153 3.847 11 C -0.387 4.387 12 C -0.051 4.051 13 C -0.366 4.366 14 C 0.133 3.867 15 C -0.507 4.507 16 H 0.107 0.893 17 C -0.196 4.196 18 N -0.381 5.381 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.177 1.177 22 H -0.197 1.197 23 N -0.297 5.297 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.257 0.743 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.229 0.771 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.660 14.055 -13.661 19.939 hybrid contribution -0.051 -0.665 0.233 0.707 sum -3.711 13.390 -13.428 19.323 Atomic orbital electron populations 1.21895 0.94005 1.02427 1.02429 1.21316 0.96901 0.96980 0.96510 1.21782 1.01262 0.94590 1.02742 1.21530 0.99570 0.79838 0.99328 1.45747 1.57504 1.09630 1.23229 1.20810 0.78592 0.88736 0.82236 1.90710 1.41781 1.78318 1.35174 1.21068 1.01458 0.88244 0.89865 1.44054 1.63254 1.05860 1.23992 1.18880 0.90152 0.85259 0.90392 1.21007 1.17824 0.96058 1.03803 1.21059 0.94698 0.94036 0.95343 1.21721 1.14067 1.00264 1.00508 1.18671 0.88248 0.87077 0.92672 1.19940 1.35063 0.95301 1.00361 0.89305 1.27004 0.95260 0.95163 1.02167 1.70216 1.30484 1.06956 1.30438 0.85146 0.78094 0.79230 0.76862 1.18619 1.17728 1.19663 1.68037 1.29503 1.11338 1.20830 0.92097 0.93210 0.91019 0.89098 0.92480 0.90748 0.92737 0.92810 0.92583 0.74268 0.87498 0.87672 0.77112 0.85018 0.84616 0.87795 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.07 71.98 0.65 -0.82 16 2 C -0.10 -1.07 2.96 -10.80 -0.03 -1.10 16 3 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 4 C 0.12 2.18 5.07 86.38 0.44 2.62 16 5 N -0.71 -13.28 5.28 -463.06 -2.45 -15.73 16 6 C 0.51 14.75 7.90 87.66 0.69 15.44 16 7 O -0.58 -22.89 15.67 -3.04 -0.05 -22.94 16 8 C 0.12 3.54 5.36 85.63 0.46 4.00 16 9 N -0.73 -31.80 5.69 -348.71 -1.99 -33.79 16 10 C 0.39 19.82 7.65 133.42 1.02 20.84 16 11 C -0.36 -15.69 9.34 22.73 0.21 -15.48 16 12 C -0.03 -1.20 10.15 22.39 0.23 -0.97 16 13 C -0.34 -17.58 9.83 22.87 0.22 -17.36 16 14 C 0.26 15.29 6.52 40.18 0.26 15.55 16 15 C -0.47 -27.24 9.13 23.46 0.21 -27.03 16 16 H 0.09 4.75 7.86 -2.91 -0.02 4.73 16 17 C 0.03 1.38 5.47 85.29 0.47 1.84 16 18 N -0.76 -43.89 11.56 21.84 0.25 -43.63 16 19 Si 0.99 40.54 29.57 68.60 2.03 42.56 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 N -0.57 -33.96 7.99 -186.58 -1.49 -35.45 16 24 H 0.06 0.55 7.18 -2.39 -0.02 0.53 16 25 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 4.78 7.66 -92.71 -0.71 4.07 16 34 H 0.11 2.61 7.92 -2.39 -0.02 2.59 16 35 H 0.11 2.60 7.92 -2.39 -0.02 2.58 16 36 H 0.39 19.20 7.56 -92.71 -0.70 18.50 16 37 H 0.13 4.50 6.68 -2.91 -0.02 4.48 16 38 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.28 14.57 8.29 -92.71 -0.77 13.80 16 Total: -1.00 -75.84 337.02 1.45 -74.39 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.36 Total: 37.84 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.50 Total: -3.26 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -5.67 Total: -128.60 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -75.84 1.45 -74.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.065 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds