Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46769 * 2 1 4 4 N 1.46495 * 109.46816 * 119.99579 * 2 1 3 5 5 C 1.46502 * 120.00243 * 294.19921 * 4 2 1 6 6 C 1.50698 * 109.47201 * 262.08001 * 5 4 2 7 7 H 1.08002 * 119.99821 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00080 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99959 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00008 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47163 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46955 * 120.00088 * 10 8 6 13 13 H 1.48498 * 109.47329 * 239.99794 * 10 8 6 14 14 C 1.34782 * 119.99552 * 114.20302 * 4 2 1 15 15 O 1.21674 * 120.00221 * 1.92233 * 14 4 2 16 16 C 1.46771 * 119.99492 * 181.93043 * 14 4 2 17 17 C 1.36663 * 126.83963 * 170.58670 * 16 14 4 18 18 N 1.33317 * 107.78398 * 179.73810 * 17 16 14 19 19 C 1.30860 * 109.68416 * 0.23589 * 18 17 16 20 20 C 1.50697 * 125.41695 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49899 * 163.77485 * 20 19 18 22 22 C 1.53004 * 117.50078 * 95.11431 * 20 19 18 23 23 N 1.34490 * 109.16272 * 0.02562 * 19 18 17 24 24 H 0.97004 * 126.46903 * 179.97438 * 23 19 18 25 25 H 1.08993 * 109.47737 * 300.00084 * 1 2 3 26 26 H 1.09008 * 109.47009 * 59.99985 * 1 2 3 27 27 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47174 * 239.99713 * 2 1 3 29 29 H 1.09004 * 109.46742 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46854 * 299.99385 * 3 2 1 31 31 H 1.08992 * 109.47401 * 59.99919 * 3 2 1 32 32 H 1.08994 * 109.46941 * 22.08148 * 5 4 2 33 33 H 1.09000 * 109.46638 * 142.07593 * 5 4 2 34 34 H 0.96995 * 119.99827 * 180.02562 * 9 8 6 35 35 H 1.07995 * 126.10603 * 359.97438 * 17 16 14 36 36 H 1.09002 * 115.55506 * 309.44335 * 20 19 18 37 37 H 1.09004 * 117.50078 * 0.02562 * 21 20 19 38 38 H 1.09004 * 117.49914 * 145.02197 * 21 20 19 39 39 H 1.09001 * 117.49755 * 214.97953 * 22 20 19 40 40 H 1.09001 * 117.49490 * 359.97348 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7721 -0.1202 2.5230 6 6 2.9922 0.6382 2.9781 7 1 3.8640 0.6899 2.3427 8 6 2.9960 1.2652 4.2060 9 7 1.9345 1.2019 4.9799 10 14 4.5086 2.2048 4.7703 11 1 5.5594 2.1256 3.7241 12 1 4.1495 3.6267 5.0040 13 1 5.0191 1.6096 6.0314 14 6 2.6940 -1.8505 1.0760 15 8 2.9290 -2.3062 -0.0274 16 6 3.1463 -2.5639 2.2762 17 6 3.6772 -3.8221 2.3303 18 7 3.9600 -4.0903 3.6052 19 6 3.6301 -3.0691 4.3541 20 6 3.7968 -2.9931 5.8499 21 6 3.7162 -1.6106 6.5003 22 6 5.0648 -2.3257 6.3864 23 7 3.1174 -2.0988 3.5767 24 1 2.7924 -1.2341 3.8727 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.9200 0.5577 2.4747 33 1 1.5585 -0.9225 3.2293 34 1 1.9370 1.6433 5.8436 35 1 3.8421 -4.4799 1.4898 36 1 3.3965 -3.8374 6.4112 37 1 3.5421 -0.7560 5.8464 38 1 3.2632 -1.5454 7.4897 39 1 5.4985 -2.7308 7.3007 40 1 5.7786 -1.9421 5.6574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322510322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = 38.280580 kcal Electronic energy + Delta-G solvation = -22832.953670 eV Core-core repulsion = 19649.288050 eV Total energy + Delta-G solvation = -3183.665620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.28939 -40.63970 -37.98470 -37.60278 -35.42715 -33.88490 -32.54077 -30.56006 -29.40717 -28.02998 -25.60472 -25.07144 -23.73676 -23.30310 -21.88685 -21.22533 -20.37724 -18.97481 -18.39438 -17.72011 -16.95802 -16.84162 -16.43743 -16.17972 -15.53256 -15.16385 -14.95845 -14.81534 -14.68016 -14.39386 -13.92838 -13.42014 -13.36806 -13.19375 -12.97988 -12.86594 -12.72510 -12.40394 -12.37558 -12.20443 -11.76342 -11.70599 -11.64733 -11.52043 -11.27416 -11.07459 -10.94927 -10.69460 -9.75323 -9.31968 -8.37411 -6.54804 0.37865 1.30065 1.37943 1.44431 1.73893 1.99859 2.24359 2.30891 2.41291 2.81426 2.89873 3.28698 3.68239 3.84106 3.99300 4.04711 4.17275 4.20632 4.31527 4.36263 4.51102 4.54851 4.73767 4.74134 4.77805 4.84102 4.92037 4.94722 5.02440 5.03408 5.15320 5.19440 5.31461 5.41536 5.52588 5.59507 5.73902 5.80387 6.33785 6.49736 6.61313 6.93482 7.11136 7.20543 8.64902 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.009678 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.656061 B = 2892.531643 C = 4394.992674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 C -0.142 4.142 4 N -0.591 5.591 5 C 0.237 3.763 6 C -0.558 4.558 7 H 0.047 0.953 8 C 0.048 3.952 9 N -0.891 5.891 10 Si 0.927 3.073 11 H -0.283 1.283 12 H -0.274 1.274 13 H -0.260 1.260 14 C 0.588 3.412 15 O -0.581 6.581 16 C -0.100 4.100 17 C 0.044 3.956 18 N -0.511 5.511 19 C 0.239 3.761 20 C -0.087 4.087 21 C -0.184 4.184 22 C -0.146 4.146 23 N -0.528 5.528 24 H 0.450 0.550 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.019 0.981 34 H 0.278 0.722 35 H 0.193 0.807 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -1.508 1.790 2.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.200 4.200 4 N -0.321 5.321 5 C 0.116 3.884 6 C -0.596 4.596 7 H 0.065 0.935 8 C -0.157 4.157 9 N -0.527 5.527 10 Si 0.752 3.248 11 H -0.208 1.208 12 H -0.199 1.199 13 H -0.184 1.184 14 C 0.377 3.623 15 O -0.463 6.463 16 C -0.219 4.219 17 C -0.111 4.111 18 N -0.231 5.231 19 C -0.025 4.025 20 C -0.107 4.107 21 C -0.221 4.221 22 C -0.184 4.184 23 N -0.144 5.144 24 H 0.308 0.692 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.210 0.790 36 H 0.173 0.827 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.130 -2.283 1.688 2.842 hybrid contribution 0.218 1.814 -0.016 1.827 sum 0.088 -0.469 1.671 1.738 Atomic orbital electron populations 1.22073 0.93424 1.01951 1.03305 1.21212 0.95328 0.93709 0.87423 1.21966 1.00388 0.94813 1.02790 1.48235 1.53220 1.21189 1.09413 1.19406 0.97296 0.93342 0.78380 1.21530 1.00197 1.34806 1.03073 0.93486 1.25368 0.98310 0.95850 0.96164 1.69962 1.28580 1.42745 1.11454 0.85967 0.80324 0.79499 0.78991 1.20825 1.19891 1.18409 1.17097 0.77620 0.80798 0.86780 1.90681 1.60141 1.68960 1.26512 1.21193 1.16303 0.98981 0.85414 1.22811 0.99574 0.93489 0.95253 1.70018 1.23839 1.27018 1.02190 1.22978 0.98559 0.85754 0.95257 1.20425 1.06210 0.99503 0.84540 1.23266 1.01585 0.93866 1.03394 1.23129 0.90079 1.01701 1.03479 1.45157 1.44450 1.18803 1.05975 0.69239 0.92722 0.88736 0.93246 0.89567 0.94394 0.89318 0.92561 0.93835 0.96373 0.91194 0.79024 0.82681 0.90271 0.85278 0.84130 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.27 71.98 0.67 -3.78 16 2 C 0.13 4.51 3.21 44.99 0.14 4.66 16 3 C -0.14 -4.75 8.68 71.98 0.62 -4.12 16 4 N -0.59 -25.20 2.38 -806.73 -1.92 -27.11 16 5 C 0.24 10.70 3.85 85.63 0.33 11.03 16 6 C -0.56 -26.53 6.59 25.60 0.17 -26.37 16 7 H 0.05 2.43 7.81 -2.91 -0.02 2.41 16 8 C 0.05 2.20 4.06 84.65 0.34 2.54 16 9 N -0.89 -41.53 13.08 21.45 0.28 -41.25 16 10 Si 0.93 37.91 29.51 68.60 2.02 39.93 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 14 C 0.59 26.83 7.57 86.47 0.65 27.48 16 15 O -0.58 -27.67 16.25 -4.26 -0.07 -27.74 16 16 C -0.10 -4.47 6.62 40.01 0.26 -4.20 16 17 C 0.04 1.82 11.67 84.10 0.98 2.81 16 18 N -0.51 -20.66 11.20 -187.40 -2.10 -22.76 16 19 C 0.24 9.41 7.62 138.20 1.05 10.47 16 20 C -0.09 -2.69 6.33 -11.54 -0.07 -2.77 16 21 C -0.18 -5.63 10.12 30.62 0.31 -5.32 16 22 C -0.15 -3.97 10.24 30.62 0.31 -3.65 16 23 N -0.53 -22.91 4.70 -176.12 -0.83 -23.74 16 24 H 0.45 20.20 2.67 -92.71 -0.25 19.95 16 25 H 0.05 1.70 6.97 -2.39 -0.02 1.68 16 26 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 3.18 6.91 -2.39 -0.02 3.17 16 29 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.06 7.07 -2.39 -0.02 2.04 16 32 H 0.04 2.02 6.45 -2.39 -0.02 2.00 16 33 H 0.02 0.90 5.11 -2.39 -0.01 0.89 16 34 H 0.28 12.23 8.31 -92.71 -0.77 11.46 16 35 H 0.19 6.95 8.06 -2.91 -0.02 6.92 16 36 H 0.16 3.91 8.14 -2.39 -0.02 3.89 16 37 H 0.08 3.03 6.03 -2.39 -0.01 3.01 16 38 H 0.13 3.22 8.14 -2.38 -0.02 3.20 16 39 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -56.03 324.79 3.98 -52.04 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 0.81 Total: 41.85 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.78 Total: 8.77 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -4.56 Total: -114.86 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.07 Total: -27.74 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.02 Total: 39.93 kcal Total: -56.03 3.98 -52.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322510322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.324 kcal (2) G-P(sol) polarization free energy of solvation -56.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds