Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47220 * 2 1 4 4 H 1.08997 * 109.47725 * 54.99711 * 3 2 1 5 5 C 1.50706 * 109.47329 * 174.99944 * 3 2 1 6 6 H 1.07994 * 120.00030 * 119.99766 * 5 3 2 7 7 C 1.37881 * 119.99402 * 299.99741 * 5 3 2 8 8 N 1.31507 * 120.00143 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99472 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47390 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46960 * 120.00148 * 9 7 5 12 12 H 1.48498 * 109.46896 * 239.99668 * 9 7 5 13 13 N 1.46504 * 109.47180 * 294.99604 * 3 2 1 14 14 C 1.34770 * 119.99894 * 84.99744 * 13 3 2 15 15 O 1.21937 * 120.00177 * 0.02562 * 14 13 3 16 16 N 1.33233 * 120.00087 * 180.02562 * 14 13 3 17 17 C 1.34330 * 120.00010 * 235.47293 * 16 14 13 18 18 C 1.41342 * 120.67430 * 5.06826 * 17 16 14 19 19 C 1.35227 * 119.25506 * 179.69219 * 18 17 16 20 20 C 1.50707 * 119.65628 * 180.29364 * 19 18 17 21 21 N 1.35537 * 120.69245 * 0.61639 * 19 18 17 22 22 H 0.96996 * 119.27705 * 179.68363 * 21 19 18 23 23 C 1.35547 * 121.45098 * 359.65398 * 21 19 18 24 24 C 1.50694 * 119.65441 * 180.02562 * 23 21 19 25 25 C 1.35229 * 120.68524 * 0.02758 * 23 21 19 26 26 H 1.09004 * 109.46574 * 60.00594 * 1 2 3 27 27 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47179 * 300.00508 * 1 2 3 29 29 H 1.08998 * 109.47529 * 239.99809 * 2 1 3 30 30 H 1.09005 * 109.47031 * 119.99680 * 2 1 3 31 31 H 0.97002 * 119.99639 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99820 * 265.00299 * 13 3 2 33 33 H 1.07999 * 120.37311 * 0.02562 * 18 17 16 34 34 H 1.08992 * 109.47371 * 270.31846 * 20 19 18 35 35 H 1.09005 * 109.46481 * 30.31696 * 20 19 18 36 36 H 1.09000 * 109.46903 * 150.31532 * 20 19 18 37 37 H 1.09000 * 109.47543 * 269.97877 * 24 23 21 38 38 H 1.08995 * 109.47588 * 29.98313 * 24 23 21 39 39 H 1.09004 * 109.46956 * 149.98307 * 24 23 21 40 40 H 1.08009 * 120.36559 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8813 1.3820 10 1 6.5988 1.5462 0.1944 11 1 6.3989 1.6167 2.6104 12 1 6.4970 -0.5174 1.4633 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3434 2.6324 -0.4293 16 7 0.0827 3.2595 -2.5057 17 6 -0.3265 4.5389 -2.4961 18 6 -0.2877 5.2995 -1.3054 19 6 -0.7006 6.5869 -1.3297 20 6 -0.6569 7.4081 -0.0668 21 7 -1.1596 7.1446 -2.4766 22 1 -1.4550 8.0685 -2.4697 23 6 -1.2145 6.4399 -3.6332 24 6 -1.7315 7.1005 -4.8850 25 6 -0.8100 5.1502 -3.6753 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8291 -0.0602 2.9504 32 1 2.2720 2.1230 -1.9978 33 1 0.0729 4.8589 -0.3876 34 1 -1.5992 7.2996 0.4700 35 1 0.1623 7.0618 0.5634 36 1 -0.5018 8.4567 -0.3205 37 1 -2.8092 6.9530 -4.9552 38 1 -1.5125 8.1676 -4.8498 39 1 -1.2470 6.6587 -5.7557 40 1 -0.8555 4.5936 -4.5998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = -16.499559 kcal Electronic energy + Delta-G solvation = -21463.448816 eV Core-core repulsion = 18277.407751 eV Total energy + Delta-G solvation = -3186.041065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99927 -40.53339 -37.29589 -35.72926 -35.09335 -34.20970 -32.88798 -31.44968 -30.10120 -28.79050 -27.77778 -25.24436 -24.00575 -23.09774 -21.76535 -20.83378 -19.50508 -18.95445 -17.92709 -17.46424 -17.28739 -16.44479 -16.08873 -16.05174 -15.64320 -14.97048 -14.62998 -14.42598 -14.22395 -14.08032 -13.82077 -13.51258 -13.27041 -13.21933 -13.07779 -13.06185 -12.89229 -12.77874 -12.70227 -12.28081 -12.17994 -12.04104 -11.67367 -11.37564 -11.05967 -10.56523 -10.18038 -9.96740 -9.52173 -8.51982 -8.16982 -6.35372 0.00130 0.29553 1.41238 1.42626 1.55862 1.84231 2.05834 2.36324 2.61263 3.03259 3.12647 3.49249 3.62029 4.01190 4.12449 4.28130 4.36578 4.43038 4.51856 4.60338 4.61493 4.72751 4.75115 4.81265 5.00917 5.03580 5.16100 5.18300 5.23079 5.27702 5.42408 5.51811 5.60562 5.74193 5.78353 5.84395 5.99510 6.16311 6.27388 6.71766 6.93362 7.22587 7.33356 8.06072 8.89286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.004230 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.901360 B = 6617.624805 C = 6994.783529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.290 3.710 4 H -0.007 1.007 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.664 3.336 15 O -0.648 6.648 16 N -0.692 5.692 17 C 0.301 3.699 18 C -0.295 4.295 19 C 0.199 3.801 20 C -0.123 4.123 21 N -0.556 5.556 22 H 0.443 0.557 23 C 0.194 3.806 24 C -0.116 4.116 25 C -0.233 4.233 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.025 0.975 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.267 0.733 32 H 0.391 0.609 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 23.057 -13.268 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.185 3.815 4 H 0.011 0.989 5 C -0.588 4.588 6 H 0.082 0.918 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.362 5.362 14 C 0.365 3.635 15 O -0.532 6.532 16 N -0.436 5.436 17 C 0.147 3.853 18 C -0.323 4.323 19 C 0.085 3.915 20 C -0.180 4.180 21 N -0.163 5.163 22 H 0.285 0.715 23 C 0.080 3.920 24 C -0.173 4.173 25 C -0.259 4.259 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.224 0.776 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.590 22.147 -12.887 27.726 hybrid contribution 1.121 -0.455 1.020 1.582 sum -9.469 21.692 -11.868 26.477 Atomic orbital electron populations 1.21606 0.97304 0.98724 0.99782 1.21790 0.93546 0.99537 1.00953 1.18283 0.93659 0.88801 0.80727 0.98892 1.21560 0.91159 1.39279 1.06820 0.91830 1.25843 1.03914 0.94051 0.94667 1.70071 1.37165 1.38258 1.09823 0.85221 0.78301 0.78090 0.78231 1.18852 1.20254 1.19990 1.45856 1.14104 1.58927 1.17263 1.17554 0.82038 0.80633 0.83314 1.90810 1.52663 1.67318 1.42417 1.68689 1.35865 1.12144 1.26905 1.19419 0.83874 0.88825 0.93203 1.21460 1.15066 0.96022 0.99748 1.20524 0.89447 0.92278 0.89276 1.21195 1.05244 1.00368 0.91143 1.41200 1.53181 1.16357 1.05522 0.71480 1.20948 0.91507 0.90871 0.88676 1.21226 1.03488 1.02164 0.90396 1.20529 1.11575 0.95344 0.98471 0.95083 0.93402 0.95565 0.94799 0.90425 0.92416 0.77627 0.87926 0.87814 0.90418 0.85998 0.87328 0.87172 0.87890 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.45 8.51 71.98 0.61 -5.84 16 2 C -0.12 -6.95 5.45 30.59 0.17 -6.79 16 3 C 0.29 17.63 2.24 44.24 0.10 17.73 16 4 H -0.01 -0.48 7.57 -2.39 -0.02 -0.49 16 5 C -0.55 -33.10 8.73 25.60 0.22 -32.88 16 6 H 0.06 3.68 7.74 -2.91 -0.02 3.66 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -56.11 11.29 21.45 0.24 -55.86 16 9 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 13 N -0.71 -39.50 5.03 -462.33 -2.32 -41.82 16 14 C 0.66 36.70 5.62 179.53 1.01 37.71 16 15 O -0.65 -39.50 12.71 -5.11 -0.06 -39.56 16 16 N -0.69 -33.25 10.53 -319.06 -3.36 -36.61 16 17 C 0.30 11.35 6.56 40.29 0.26 11.62 16 18 C -0.30 -10.28 8.53 22.34 0.19 -10.09 16 19 C 0.20 3.83 6.80 41.29 0.28 4.11 16 20 C -0.12 -1.43 10.07 71.24 0.72 -0.72 16 21 N -0.56 -5.36 5.24 -171.67 -0.90 -6.26 16 22 H 0.44 -0.47 8.64 -92.71 -0.80 -1.27 16 23 C 0.19 2.36 6.80 41.29 0.28 2.64 16 24 C -0.12 -0.12 10.07 71.23 0.72 0.60 16 25 C -0.23 -5.68 9.60 22.34 0.21 -5.47 16 26 H 0.03 1.76 5.64 -2.38 -0.01 1.74 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.03 1.50 7.84 -2.39 -0.02 1.48 16 29 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 4.81 5.95 -2.38 -0.01 4.80 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.39 20.24 8.64 -92.71 -0.80 19.43 16 33 H 0.10 4.63 6.40 -2.91 -0.02 4.61 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.29 8.07 -2.38 -0.02 1.27 16 36 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.10 0.11 8.07 -2.38 -0.02 0.10 16 40 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -95.52 329.72 0.31 -95.21 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.54 Total: 23.70 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 5.22 Total: 13.97 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -6.34 Total: -140.56 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.06 Total: -39.56 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -95.52 0.31 -95.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.708 kcal (2) G-P(sol) polarization free energy of solvation -95.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds