Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 N 1.46903 * 109.47505 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00436 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47046 * 324.99700 * 5 4 3 7 7 C 1.53000 * 109.47161 * 84.99804 * 5 4 3 8 8 C 1.50692 * 109.47083 * 205.00094 * 5 4 3 9 9 O 1.21275 * 120.00333 * 359.97438 * 8 5 4 10 10 N 1.34781 * 120.00139 * 179.97438 * 8 5 4 11 11 C 1.39265 * 120.00209 * 185.57960 * 10 8 5 12 12 C 1.39674 * 119.57566 * 18.84554 * 11 10 8 13 13 C 1.38652 * 119.49665 * 179.97438 * 12 11 10 14 14 C 1.38355 * 118.67052 * 0.02562 * 13 12 11 15 15 C 1.40581 * 119.12699 * 359.97438 * 14 13 12 16 16 C 1.41333 * 119.78587 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00235 * 8.93424 * 16 15 14 18 18 C 1.40023 * 120.00094 * 188.93626 * 16 15 14 19 19 N 1.30744 * 120.00111 * 196.07864 * 18 16 15 20 20 Si 1.86798 * 120.00063 * 16.06966 * 18 16 15 21 21 H 1.48504 * 109.47484 * 270.00354 * 20 18 16 22 22 H 1.48505 * 109.46940 * 30.00841 * 20 18 16 23 23 H 1.48506 * 109.47034 * 150.00315 * 20 18 16 24 24 N 1.31910 * 119.57585 * 199.08593 * 11 10 8 25 25 H 1.08997 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47253 * 299.99388 * 1 2 3 27 27 H 1.08997 * 109.47621 * 59.99468 * 1 2 3 28 28 H 1.09001 * 109.47253 * 240.00612 * 2 1 3 29 29 H 1.08997 * 109.47621 * 120.00532 * 2 1 3 30 30 H 1.09003 * 109.47131 * 60.00202 * 3 2 1 31 31 H 1.08997 * 109.47367 * 300.00688 * 3 2 1 32 32 H 1.00893 * 110.99820 * 56.04238 * 4 3 2 33 33 H 1.08999 * 109.46946 * 300.00068 * 7 5 4 34 34 H 1.08999 * 109.47413 * 60.00478 * 7 5 4 35 35 H 1.09005 * 109.47125 * 180.02562 * 7 5 4 36 36 H 0.97004 * 119.99512 * 5.58178 * 10 8 5 37 37 H 1.08003 * 120.24820 * 359.96417 * 12 11 10 38 38 H 1.07995 * 120.66856 * 179.97438 * 13 12 11 39 39 H 1.07989 * 120.43490 * 180.02562 * 14 13 12 40 40 H 0.96996 * 119.99903 * 354.92519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.8140 0.0000 6 1 3.3794 3.4553 -0.5889 7 6 4.1013 3.3344 1.4373 8 6 5.4172 2.8219 -0.6011 9 8 5.9148 1.7870 -0.9911 10 7 6.1003 3.9792 -0.7052 11 6 7.3266 4.0070 -1.3646 12 6 7.6620 2.9721 -2.2406 13 6 8.8832 3.0018 -2.8966 14 6 9.7380 4.0638 -2.6603 15 6 9.3426 5.0747 -1.7671 16 6 10.2051 6.1657 -1.5151 17 1 11.0962 6.2984 -2.1107 18 6 9.9044 7.0744 -0.4931 19 7 10.5035 8.2359 -0.4539 20 14 8.6471 6.6275 0.8141 21 1 7.2973 7.0602 0.3712 22 1 8.6519 5.1572 1.0233 23 1 8.9927 7.3097 2.0871 24 7 8.1585 5.0080 -1.1501 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6765 1.9564 -0.8899 32 1 3.8702 0.9166 -0.7821 33 1 3.1018 3.3287 1.8719 34 1 4.7573 2.6933 2.0261 35 1 4.4915 4.3522 1.4377 36 1 5.7376 4.7926 -0.3209 37 1 6.9754 2.1550 -2.4056 38 1 9.1620 2.2114 -3.5776 39 1 10.6958 4.1158 -3.1562 40 1 11.2085 8.4395 -1.0882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332076998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = -18.586639 kcal Electronic energy + Delta-G solvation = -21231.729801 eV Core-core repulsion = 18045.598234 eV Total energy + Delta-G solvation = -3186.131568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37481 -38.39642 -36.78662 -34.63923 -33.84663 -33.40219 -31.10119 -30.30336 -29.07902 -25.88185 -25.36318 -23.87767 -21.84971 -21.62895 -21.27333 -19.66481 -18.37481 -17.63354 -16.64306 -16.26824 -15.24976 -15.14814 -14.99352 -14.79182 -14.32724 -13.98175 -13.62538 -13.55304 -13.02857 -12.77049 -12.61124 -12.44088 -12.27926 -12.18891 -11.88108 -11.79025 -11.65802 -11.20726 -11.10093 -10.94323 -10.87057 -10.35295 -10.01090 -9.76174 -9.20531 -9.10081 -8.66207 -8.53274 -7.93656 -7.44214 -7.29396 -4.77771 2.16711 2.65048 2.96623 3.17036 3.45462 3.59496 3.88345 3.97401 4.31540 4.57044 4.62350 4.73682 4.78157 4.96077 5.02994 5.12733 5.28046 5.38224 5.50633 5.52359 5.58010 5.66065 5.75938 5.84825 5.91747 6.01309 6.04894 6.12039 6.44058 6.50827 6.53379 6.74707 7.11866 7.16428 7.23392 7.42150 7.55473 7.59132 7.75805 8.09490 8.25959 8.40671 8.63754 9.41704 9.95684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.004222 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.148107 B = 6629.670283 C = 7493.360720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.674 5.674 5 C 0.070 3.930 6 H 0.073 0.927 7 C -0.140 4.140 8 C 0.514 3.486 9 O -0.506 6.506 10 N -0.652 5.652 11 C 0.383 3.617 12 C -0.311 4.311 13 C -0.037 4.037 14 C -0.277 4.277 15 C 0.274 3.726 16 C -0.481 4.481 17 H 0.084 0.916 18 C 0.049 3.951 19 N -0.803 5.803 20 Si 1.142 2.858 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.326 1.326 24 N -0.594 5.594 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.356 0.644 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.407 0.593 37 H 0.137 0.863 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.391 -9.080 1.891 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.309 5.309 5 C -0.044 4.044 6 H 0.091 0.909 7 C -0.198 4.198 8 C 0.300 3.700 9 O -0.380 6.380 10 N -0.297 5.297 11 C 0.151 3.849 12 C -0.336 4.336 13 C -0.061 4.061 14 C -0.299 4.299 15 C 0.150 3.850 16 C -0.513 4.513 17 H 0.102 0.898 18 C -0.173 4.173 19 N -0.425 5.425 20 Si 0.975 3.025 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.258 1.258 24 N -0.319 5.319 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.178 0.822 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.154 0.846 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.912 -8.601 4.064 19.404 hybrid contribution 0.930 -0.371 -2.850 3.020 sum -15.982 -8.972 1.215 18.369 Atomic orbital electron populations 1.21726 0.95547 1.01781 1.01778 1.21491 0.95469 0.96255 1.02893 1.22091 0.87171 0.97305 1.00562 1.60410 1.07159 1.11516 1.51848 1.21452 0.92505 0.92064 0.98332 0.90940 1.21795 1.03191 1.00830 0.94005 1.20564 0.87500 0.83200 0.78742 1.90620 1.68677 1.31762 1.46985 1.43258 1.19457 1.11726 1.55251 1.18092 0.84736 0.92259 0.89773 1.21491 1.01330 1.03706 1.07026 1.20916 0.93252 0.96092 0.95829 1.21619 1.01463 0.98246 1.08606 1.18183 0.87398 0.91508 0.87925 1.20661 1.07661 1.07274 1.15673 0.89804 1.27660 0.99554 0.90566 0.99534 1.70615 1.17527 1.18945 1.35384 0.82151 0.73776 0.75508 0.71034 1.21505 1.20667 1.25829 1.66182 1.06416 1.27524 1.31806 0.92529 0.92622 0.92863 0.92001 0.90939 0.90842 0.95250 0.82195 0.91420 0.91028 0.91707 0.75718 0.84554 0.87650 0.87688 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.99 6.19 -26.73 -0.17 -1.16 16 3 C 0.06 0.52 5.48 -3.82 -0.02 0.50 16 4 N -0.67 -7.86 6.19 -107.95 -0.67 -8.53 16 5 C 0.07 0.84 3.04 -68.87 -0.21 0.63 16 6 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 7 C -0.14 -1.50 9.31 37.16 0.35 -1.15 16 8 C 0.51 8.52 7.02 -10.99 -0.08 8.44 16 9 O -0.51 -9.85 12.44 5.56 0.07 -9.78 16 10 N -0.65 -12.00 5.34 -11.40 -0.06 -12.06 16 11 C 0.38 8.79 7.51 -154.98 -1.16 7.63 16 12 C -0.31 -7.04 8.83 -38.89 -0.34 -7.38 16 13 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 14 C -0.28 -6.66 9.83 -38.66 -0.38 -7.04 16 15 C 0.27 7.23 6.27 -85.00 -0.53 6.70 16 16 C -0.48 -13.08 9.51 -37.74 -0.36 -13.44 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 18 C 0.05 1.32 5.51 -17.35 -0.10 1.22 16 19 N -0.80 -21.68 13.65 55.55 0.76 -20.92 16 20 Si 1.14 27.45 25.93 -169.99 -4.41 23.04 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.92 6.55 56.52 0.37 -6.55 16 23 H -0.33 -7.69 7.11 56.52 0.40 -7.28 16 24 N -0.59 -15.08 5.06 -10.26 -0.05 -15.13 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.61 7.44 -51.93 -0.39 0.23 16 31 H 0.03 0.25 8.06 -51.93 -0.42 -0.16 16 32 H 0.36 4.55 7.45 -39.30 -0.29 4.25 16 33 H 0.07 0.59 7.45 -51.93 -0.39 0.21 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 36 H 0.41 6.55 8.10 -40.82 -0.33 6.22 16 37 H 0.14 3.00 5.33 -52.50 -0.28 2.72 16 38 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 39 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.28 7.35 8.73 -40.82 -0.36 6.99 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -30.11 328.76 -8.31 -38.43 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.87 Total: 6.88 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.03 Total: -6.89 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.02 Total: -56.63 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.41 Total: 23.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.11 -8.31 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332076998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.840 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds