Wall clock time and date at job start Mon Mar 30 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 N 1.46903 * 109.47505 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00436 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47046 * 324.99700 * 5 4 3 7 7 C 1.53000 * 109.47161 * 84.99804 * 5 4 3 8 8 C 1.50692 * 109.47083 * 205.00094 * 5 4 3 9 9 O 1.21275 * 120.00333 * 359.97438 * 8 5 4 10 10 N 1.34781 * 120.00139 * 179.97438 * 8 5 4 11 11 C 1.39265 * 120.00209 * 185.57960 * 10 8 5 12 12 C 1.39674 * 119.57566 * 18.84554 * 11 10 8 13 13 C 1.38652 * 119.49665 * 179.97438 * 12 11 10 14 14 C 1.38355 * 118.67052 * 0.02562 * 13 12 11 15 15 C 1.40581 * 119.12699 * 359.97438 * 14 13 12 16 16 C 1.41333 * 119.78587 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00235 * 8.93424 * 16 15 14 18 18 C 1.40023 * 120.00094 * 188.93626 * 16 15 14 19 19 N 1.30744 * 120.00111 * 196.07864 * 18 16 15 20 20 Si 1.86798 * 120.00063 * 16.06966 * 18 16 15 21 21 H 1.48504 * 109.47484 * 270.00354 * 20 18 16 22 22 H 1.48505 * 109.46940 * 30.00841 * 20 18 16 23 23 H 1.48506 * 109.47034 * 150.00315 * 20 18 16 24 24 N 1.31910 * 119.57585 * 199.08593 * 11 10 8 25 25 H 1.08997 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47253 * 299.99388 * 1 2 3 27 27 H 1.08997 * 109.47621 * 59.99468 * 1 2 3 28 28 H 1.09001 * 109.47253 * 240.00612 * 2 1 3 29 29 H 1.08997 * 109.47621 * 120.00532 * 2 1 3 30 30 H 1.09003 * 109.47131 * 60.00202 * 3 2 1 31 31 H 1.08997 * 109.47367 * 300.00688 * 3 2 1 32 32 H 1.00893 * 110.99820 * 56.04238 * 4 3 2 33 33 H 1.08999 * 109.46946 * 300.00068 * 7 5 4 34 34 H 1.08999 * 109.47413 * 60.00478 * 7 5 4 35 35 H 1.09005 * 109.47125 * 180.02562 * 7 5 4 36 36 H 0.97004 * 119.99512 * 5.58178 * 10 8 5 37 37 H 1.08003 * 120.24820 * 359.96417 * 12 11 10 38 38 H 1.07995 * 120.66856 * 179.97438 * 13 12 11 39 39 H 1.07989 * 120.43490 * 180.02562 * 14 13 12 40 40 H 0.96996 * 119.99903 * 354.92519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 2.8140 0.0000 6 1 3.3794 3.4553 -0.5889 7 6 4.1013 3.3344 1.4373 8 6 5.4172 2.8219 -0.6011 9 8 5.9148 1.7870 -0.9911 10 7 6.1003 3.9792 -0.7052 11 6 7.3266 4.0070 -1.3646 12 6 7.6620 2.9721 -2.2406 13 6 8.8832 3.0018 -2.8966 14 6 9.7380 4.0638 -2.6603 15 6 9.3426 5.0747 -1.7671 16 6 10.2051 6.1657 -1.5151 17 1 11.0962 6.2984 -2.1107 18 6 9.9044 7.0744 -0.4931 19 7 10.5035 8.2359 -0.4539 20 14 8.6471 6.6275 0.8141 21 1 7.2973 7.0602 0.3712 22 1 8.6519 5.1572 1.0233 23 1 8.9927 7.3097 2.0871 24 7 8.1585 5.0080 -1.1501 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6765 1.9564 -0.8899 32 1 3.8702 0.9166 -0.7821 33 1 3.1018 3.3287 1.8719 34 1 4.7573 2.6933 2.0261 35 1 4.4915 4.3522 1.4377 36 1 5.7376 4.7926 -0.3209 37 1 6.9754 2.1550 -2.4056 38 1 9.1620 2.2114 -3.5776 39 1 10.6958 4.1158 -3.1562 40 1 11.2085 8.4395 -1.0882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332076998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:41 Heat of formation + Delta-G solvation = -38.084469 kcal Electronic energy + Delta-G solvation = -21232.575291 eV Core-core repulsion = 18045.598234 eV Total energy + Delta-G solvation = -3186.977057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83928 -40.07260 -37.75133 -36.28625 -35.44892 -34.45371 -32.97183 -31.64200 -30.36642 -27.36975 -26.57622 -25.09410 -23.63931 -22.86917 -22.19295 -21.16173 -20.24181 -19.04826 -18.10866 -17.31931 -16.91606 -16.47216 -16.34832 -15.89634 -15.85437 -15.37734 -15.08391 -14.62174 -14.50484 -14.24219 -14.17584 -13.76114 -13.45906 -13.21750 -13.14564 -12.91450 -12.69483 -12.46131 -12.40299 -12.18249 -11.86726 -11.82599 -11.59355 -11.57324 -11.05421 -10.69104 -10.39862 -9.86458 -9.50232 -9.33225 -9.23076 -6.80877 0.47800 0.75137 1.47053 1.50813 1.71445 1.77025 1.99353 2.39980 2.62338 3.09282 3.40893 3.57271 4.01792 4.05037 4.07855 4.12861 4.26980 4.40045 4.49735 4.64901 4.67918 4.68805 4.70860 4.76764 4.83856 4.89785 4.92749 5.22972 5.27113 5.33392 5.34004 5.37700 5.41788 5.43240 5.71100 5.77687 5.92351 5.96610 6.25156 6.32693 6.41294 6.64300 6.98191 7.51397 7.92281 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.004222 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.148107 B = 6629.670283 C = 7493.360720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.058 3.942 4 N -0.685 5.685 5 C 0.080 3.920 6 H 0.100 0.900 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.536 6.536 10 N -0.649 5.649 11 C 0.373 3.627 12 C -0.309 4.309 13 C -0.030 4.030 14 C -0.294 4.294 15 C 0.258 3.742 16 C -0.512 4.512 17 H 0.069 0.931 18 C 0.021 3.979 19 N -0.824 5.824 20 Si 1.173 2.827 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.320 1.320 24 N -0.607 5.607 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.348 0.652 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.419 0.581 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.114 0.886 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.100 -10.123 2.244 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.320 5.320 5 C -0.033 4.033 6 H 0.117 0.883 7 C -0.197 4.197 8 C 0.303 3.697 9 O -0.411 6.411 10 N -0.296 5.296 11 C 0.141 3.859 12 C -0.334 4.334 13 C -0.054 4.054 14 C -0.317 4.317 15 C 0.132 3.868 16 C -0.544 4.544 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.446 5.446 20 Si 1.003 2.997 21 H -0.195 1.195 22 H -0.221 1.221 23 H -0.252 1.252 24 N -0.332 5.332 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.257 0.743 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.132 0.868 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.661 -9.632 4.422 22.336 hybrid contribution 1.680 -0.260 -3.032 3.476 sum -17.981 -9.892 1.391 20.569 Atomic orbital electron populations 1.21700 0.94261 1.02281 1.02255 1.21470 0.96521 0.95674 1.02253 1.22179 0.85433 0.97990 1.01402 1.60496 1.08814 1.11079 1.51603 1.21511 0.89562 0.93077 0.99109 0.88289 1.21831 1.04418 1.00728 0.92723 1.21479 0.88697 0.81964 0.77600 1.90587 1.69681 1.32675 1.48185 1.43343 1.18048 1.13107 1.55056 1.18466 0.85875 0.91649 0.89903 1.21851 1.01636 1.03633 1.06244 1.21322 0.92472 0.96115 0.95538 1.21785 1.02501 0.98550 1.08821 1.18379 0.87849 0.91867 0.88659 1.20657 1.08160 1.08845 1.16788 0.91315 1.28452 1.00422 0.90372 1.00418 1.70637 1.18505 1.19415 1.36088 0.81750 0.73578 0.74413 0.69931 1.19529 1.22077 1.25224 1.66178 1.06448 1.28554 1.31991 0.92097 0.92005 0.92495 0.92556 0.91723 0.89734 0.94478 0.83076 0.88906 0.92741 0.90898 0.74348 0.83502 0.83998 0.86796 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.70 6.19 30.59 0.19 -1.51 16 3 C 0.06 0.87 5.48 86.30 0.47 1.35 16 4 N -0.68 -14.29 6.19 -495.46 -3.06 -17.36 16 5 C 0.08 1.69 3.04 44.17 0.13 1.83 16 6 H 0.10 1.63 7.80 -2.39 -0.02 1.61 16 7 C -0.14 -2.54 9.31 71.98 0.67 -1.87 16 8 C 0.51 15.91 7.02 87.65 0.62 16.53 16 9 O -0.54 -19.91 12.44 -3.01 -0.04 -19.95 16 10 N -0.65 -22.54 5.34 -308.37 -1.65 -24.19 16 11 C 0.37 16.59 7.51 133.25 1.00 17.59 16 12 C -0.31 -13.43 8.83 22.72 0.20 -13.23 16 13 C -0.03 -1.28 10.15 22.40 0.23 -1.06 16 14 C -0.29 -14.02 9.83 22.87 0.22 -13.79 16 15 C 0.26 13.65 6.27 40.19 0.25 13.91 16 16 C -0.51 -28.59 9.51 23.46 0.22 -28.37 16 17 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 18 C 0.02 1.15 5.51 85.29 0.47 1.62 16 19 N -0.82 -45.33 13.65 21.84 0.30 -45.04 16 20 Si 1.17 55.36 25.93 68.60 1.78 57.14 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -14.31 6.55 99.48 0.65 -13.66 16 23 H -0.32 -14.63 7.11 99.48 0.71 -13.92 16 24 N -0.61 -30.34 5.06 -186.36 -0.94 -31.28 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.09 7.44 -2.39 -0.02 1.08 16 31 H 0.04 0.51 8.06 -2.39 -0.02 0.49 16 32 H 0.35 8.27 7.45 -89.70 -0.67 7.61 16 33 H 0.09 1.25 7.45 -2.39 -0.02 1.23 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.22 7.45 -2.38 -0.02 1.20 16 36 H 0.42 12.43 8.10 -92.70 -0.75 11.68 16 37 H 0.15 6.13 5.33 -3.18 -0.02 6.11 16 38 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.11 5.09 8.06 -2.92 -0.02 5.07 16 40 H 0.28 15.07 8.73 -92.71 -0.81 14.26 16 Total: -1.00 -64.67 328.76 1.32 -63.35 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.46 Total: 25.19 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.39 Total: -7.86 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -5.36 Total: -117.86 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.04 Total: -19.95 kcal Atomic # 14 Polarization: 55.36 SS G_CDS: 1.78 Total: 57.14 kcal Total: -64.67 1.32 -63.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332076998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.264 kcal (2) G-P(sol) polarization free energy of solvation -64.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds