Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47594 * 2 1 4 4 N 1.46894 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.46901 * 111.00044 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47533 * 34.99274 * 5 4 3 7 7 C 1.53007 * 109.46954 * 274.99785 * 5 4 3 8 8 C 1.50704 * 109.47560 * 155.00031 * 5 4 3 9 9 O 1.21274 * 119.99481 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99961 * 180.02562 * 8 5 4 11 11 C 1.39274 * 119.99679 * 174.86585 * 10 8 5 12 12 C 1.39668 * 119.57107 * 185.35421 * 11 10 8 13 13 C 1.38659 * 119.49346 * 179.97438 * 12 11 10 14 14 C 1.38347 * 118.66786 * 0.02562 * 13 12 11 15 15 C 1.40577 * 119.13229 * 359.97438 * 14 13 12 16 16 C 1.41332 * 119.78869 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00283 * 359.97438 * 16 15 14 18 18 C 1.40028 * 120.00175 * 179.97438 * 16 15 14 19 19 N 1.30750 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00175 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.46983 * 60.00159 * 20 18 16 22 22 H 1.48506 * 109.47045 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47095 * 299.99730 * 20 18 16 24 24 N 1.31901 * 119.57391 * 5.08053 * 11 10 8 25 25 H 1.08993 * 109.46754 * 60.00043 * 1 2 3 26 26 H 1.08996 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46466 * 300.00438 * 1 2 3 28 28 H 1.08998 * 109.46874 * 239.99096 * 2 1 3 29 29 H 1.09006 * 109.46761 * 119.99685 * 2 1 3 30 30 H 1.08995 * 109.47252 * 59.99610 * 3 2 1 31 31 H 1.09006 * 109.46809 * 299.99655 * 3 2 1 32 32 H 1.00897 * 111.00155 * 303.95096 * 4 3 2 33 33 H 1.09006 * 109.47150 * 179.97438 * 7 5 4 34 34 H 1.09001 * 109.46878 * 59.99912 * 7 5 4 35 35 H 1.08998 * 109.47483 * 299.99925 * 7 5 4 36 36 H 0.96990 * 120.00161 * 354.85348 * 10 8 5 37 37 H 1.07998 * 120.25308 * 359.97015 * 12 11 10 38 38 H 1.07997 * 120.66914 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.43144 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0356 2.8137 -0.0013 6 1 3.3802 3.4549 0.5881 7 6 4.1005 3.3344 -1.4385 8 6 5.4181 2.8214 0.5986 9 8 5.9155 1.7864 0.9887 10 7 6.1012 3.9786 0.7025 11 6 7.3326 4.0043 1.3527 12 6 7.9802 5.2252 1.5543 13 6 9.2058 5.2491 2.2023 14 6 9.7529 4.0531 2.6316 15 6 9.0518 2.8571 2.3987 16 6 9.5976 1.6275 2.8318 17 1 10.5506 1.6086 3.3395 18 6 8.9028 0.4335 2.6027 19 7 7.7493 0.4562 1.9875 20 14 9.6246 -1.1917 3.1745 21 1 9.8083 -1.1607 4.6477 22 1 8.7016 -2.2976 2.8134 23 1 10.9379 -1.4090 2.5163 24 7 7.8695 2.8759 1.7750 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.8710 0.9161 0.7805 33 1 4.4908 4.3522 -1.4390 34 1 3.1006 3.3289 -1.8724 35 1 4.7559 2.6934 -2.0281 36 1 5.7353 4.7933 0.3243 37 1 7.5298 6.1437 1.2081 38 1 9.7230 6.1825 2.3686 39 1 10.7062 4.0385 3.1390 40 1 7.2682 -0.3709 1.8285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332077059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = -7.325765 kcal Electronic energy + Delta-G solvation = -21610.624007 eV Core-core repulsion = 18424.980747 eV Total energy + Delta-G solvation = -3185.643260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12739 -39.54324 -37.50204 -35.91386 -34.89176 -34.33738 -32.22111 -31.31669 -30.17978 -27.48576 -26.46815 -24.80600 -23.35865 -22.63779 -22.18034 -20.62352 -19.56326 -18.13256 -17.82832 -16.96125 -16.50921 -16.27065 -15.98031 -15.63933 -15.59070 -15.30391 -14.76128 -14.56660 -14.20839 -13.86602 -13.72266 -13.32931 -13.10343 -13.00473 -12.83123 -12.73781 -12.57586 -12.44785 -12.36769 -12.31672 -11.81538 -11.78992 -11.59836 -11.47819 -10.85746 -10.54731 -9.89492 -9.42157 -9.07861 -8.81572 -8.04581 -6.41788 0.92155 1.25475 1.39542 1.51075 1.53052 2.12622 2.25630 2.26673 2.99849 3.20404 3.76284 4.04354 4.07416 4.13390 4.17749 4.34531 4.37889 4.50225 4.67391 4.71050 4.74359 4.85476 4.86794 4.91601 4.95651 4.96518 5.07004 5.20267 5.27840 5.29240 5.33797 5.41384 5.68222 5.85134 5.92689 6.04453 6.16970 6.31655 6.38045 6.75033 6.84926 7.08350 7.67995 8.34892 8.57029 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.005688 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.869035 B = 4921.765925 C = 6608.949201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.062 3.938 4 N -0.688 5.688 5 C 0.080 3.920 6 H 0.083 0.917 7 C -0.127 4.127 8 C 0.459 3.541 9 O -0.452 6.452 10 N -0.653 5.653 11 C 0.349 3.651 12 C -0.347 4.347 13 C -0.035 4.035 14 C -0.331 4.331 15 C 0.237 3.763 16 C -0.467 4.467 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.688 5.688 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.261 1.261 24 N -0.508 5.508 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.086 0.914 32 H 0.342 0.658 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.420 0.580 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.152 3.749 -5.224 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.067 4.067 4 N -0.322 5.322 5 C -0.034 4.034 6 H 0.101 0.899 7 C -0.185 4.185 8 C 0.242 3.758 9 O -0.317 6.317 10 N -0.302 5.302 11 C 0.110 3.890 12 C -0.372 4.372 13 C -0.059 4.059 14 C -0.354 4.354 15 C 0.111 3.889 16 C -0.498 4.498 17 H 0.103 0.897 18 C -0.214 4.214 19 N -0.307 5.307 20 Si 0.795 3.205 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.186 1.186 24 N -0.228 5.228 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.257 0.743 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.430 1.934 -5.835 14.769 hybrid contribution 0.714 0.715 1.228 1.591 sum -12.715 2.649 -4.606 13.781 Atomic orbital electron populations 1.21684 0.93845 1.02314 1.02330 1.21478 0.96828 0.95820 1.01885 1.22133 0.85860 0.97722 1.00982 1.60492 1.08387 1.11927 1.51417 1.21479 0.91062 0.91948 0.98901 0.89932 1.21710 1.03458 1.00624 0.92703 1.21693 0.88894 0.84384 0.80780 1.91135 1.67575 1.30879 1.42141 1.43364 1.17983 1.12387 1.56495 1.19171 0.86849 0.91112 0.91874 1.20982 1.01297 0.96207 1.18694 1.21043 0.94080 0.97159 0.93640 1.21808 1.03799 0.94182 1.15656 1.18867 0.87843 0.93404 0.88776 1.19877 1.05516 0.91084 1.33349 0.89720 1.27006 0.95340 1.03877 0.95154 1.70499 1.09229 1.28620 1.22319 0.85406 0.78926 0.76676 0.79538 1.18512 1.19837 1.18563 1.68665 1.12409 1.24699 1.16977 0.91669 0.92042 0.92533 0.91850 0.93285 0.95123 0.89614 0.83749 0.90332 0.89740 0.93704 0.74259 0.84991 0.84549 0.87848 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.12 -2.52 6.19 30.59 0.19 -2.33 16 3 C 0.06 1.34 5.48 86.30 0.47 1.82 16 4 N -0.69 -20.35 6.19 -495.45 -3.06 -23.42 16 5 C 0.08 2.25 3.04 44.17 0.13 2.38 16 6 H 0.08 1.96 7.80 -2.39 -0.02 1.95 16 7 C -0.13 -2.86 9.31 71.98 0.67 -2.19 16 8 C 0.46 18.47 7.14 87.66 0.63 19.09 16 9 O -0.45 -23.24 11.42 -3.01 -0.03 -23.28 16 10 N -0.65 -25.09 5.31 -308.37 -1.64 -26.73 16 11 C 0.35 17.01 7.43 133.25 0.99 18.00 16 12 C -0.35 -14.88 9.96 22.72 0.23 -14.66 16 13 C -0.04 -1.54 10.15 22.40 0.23 -1.32 16 14 C -0.33 -17.02 9.83 22.87 0.22 -16.79 16 15 C 0.24 13.87 6.55 40.19 0.26 14.13 16 16 C -0.47 -27.03 9.14 23.47 0.21 -26.82 16 17 H 0.08 4.58 7.85 -2.91 -0.02 4.56 16 18 C 0.01 0.66 5.50 85.29 0.47 1.13 16 19 N -0.69 -39.91 9.00 21.84 0.20 -39.71 16 20 Si 0.97 41.29 29.56 68.60 2.03 43.31 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 N -0.51 -29.48 5.74 -186.36 -1.07 -30.55 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.03 0.64 8.06 -2.39 -0.02 0.63 16 31 H 0.09 1.59 7.43 -2.38 -0.02 1.57 16 32 H 0.34 12.14 7.45 -89.70 -0.67 11.48 16 33 H 0.08 1.43 7.46 -2.38 -0.02 1.41 16 34 H 0.08 1.49 7.45 -2.39 -0.02 1.47 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.42 11.76 7.98 -92.72 -0.74 11.02 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 40 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 Total: -1.00 -72.76 330.94 1.48 -71.28 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.36 Total: 38.14 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.42 Total: -9.05 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -5.57 Total: -120.41 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.03 Total: -23.28 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -72.76 1.48 -71.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332077059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.956 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds