Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 H 1.08998 * 109.46741 * 54.99697 * 3 2 1 5 5 C 1.53004 * 109.47040 * 294.99951 * 3 2 1 6 6 C 1.52998 * 109.47032 * 175.00146 * 3 2 1 7 7 H 1.08998 * 109.47025 * 59.99887 * 6 3 2 8 8 N 1.46900 * 109.46980 * 299.99633 * 6 3 2 9 9 C 1.50697 * 109.46755 * 180.02562 * 6 3 2 10 10 O 1.21277 * 119.99943 * 100.00058 * 9 6 3 11 11 N 1.34779 * 120.00060 * 279.99542 * 9 6 3 12 12 C 1.39267 * 119.99935 * 174.82562 * 11 9 6 13 13 C 1.39675 * 119.57442 * 185.27068 * 12 11 9 14 14 C 1.38654 * 119.49725 * 179.74437 * 13 12 11 15 15 C 1.38341 * 118.66828 * 0.52312 * 14 13 12 16 16 C 1.40590 * 119.13131 * 359.74554 * 15 14 13 17 17 C 1.41333 * 119.79061 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99633 * 359.97438 * 17 16 15 19 19 C 1.40023 * 119.99995 * 179.97438 * 17 16 15 20 20 N 1.30732 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47253 * 59.99951 * 21 19 17 23 23 H 1.48492 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46763 * 300.00130 * 21 19 17 25 25 N 1.31905 * 119.57829 * 5.54429 * 12 11 9 26 26 H 1.09003 * 109.47501 * 60.00211 * 1 2 3 27 27 H 1.09003 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47153 * 299.99894 * 1 2 3 29 29 H 1.09000 * 109.47153 * 240.00106 * 2 1 3 30 30 H 1.09000 * 109.46858 * 120.00150 * 2 1 3 31 31 H 1.08997 * 109.46602 * 179.97438 * 5 3 2 32 32 H 1.08998 * 109.47279 * 300.00273 * 5 3 2 33 33 H 1.09001 * 109.46870 * 59.99928 * 5 3 2 34 34 H 1.00900 * 111.00588 * 300.00669 * 8 6 3 35 35 H 1.00902 * 110.99655 * 63.95889 * 8 6 3 36 36 H 0.96996 * 119.99587 * 354.82957 * 11 9 6 37 37 H 1.08006 * 120.24837 * 0.02562 * 13 12 11 38 38 H 1.08001 * 120.66438 * 180.26767 * 14 13 12 39 39 H 1.07999 * 120.43915 * 179.76822 * 15 14 13 40 40 H 0.97004 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9052 -0.7161 8 7 3.9534 0.7876 1.3809 9 6 4.0671 2.8651 0.1263 10 8 4.3555 3.4058 1.1728 11 7 4.1958 3.5349 -1.0362 12 6 4.5561 4.8801 -1.0285 13 6 4.5795 5.5944 -2.2286 14 6 4.9334 6.9349 -2.2184 15 6 5.2652 7.5246 -1.0118 16 6 5.2281 6.7507 0.1613 17 6 5.5639 7.3391 1.4017 18 1 5.8484 8.3800 1.4461 19 6 5.5279 6.5724 2.5729 20 7 5.1841 5.3123 2.5190 21 14 5.9711 7.3504 4.2124 22 1 5.0449 8.4768 4.4923 23 1 5.8558 6.3347 5.2894 24 1 7.3657 7.8579 4.1585 25 7 4.8762 5.4620 0.1112 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9982 3.1543 -1.3071 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3969 34 1 3.5626 1.2688 2.1770 35 1 3.6844 -0.1849 1.3785 36 1 4.0374 3.0800 -1.8780 37 1 4.3195 5.1072 -3.1568 38 1 4.9535 7.5063 -3.1347 39 1 5.5488 8.5659 -0.9713 40 1 5.1595 4.7811 3.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337077376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 11.858298 kcal Electronic energy + Delta-G solvation = -22141.253167 eV Core-core repulsion = 18956.441791 eV Total energy + Delta-G solvation = -3184.811376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.66615 -37.93897 -36.42396 -34.14029 -33.01057 -32.61483 -30.30041 -29.94050 -28.83010 -25.83578 -25.21291 -24.21059 -21.79458 -21.14115 -20.07420 -19.16734 -17.70396 -16.72061 -16.11915 -15.42977 -15.05799 -14.74688 -14.43086 -14.30775 -13.75372 -13.60644 -13.51125 -13.39177 -12.80603 -12.68096 -12.11137 -12.05834 -11.89483 -11.73262 -11.65685 -11.15851 -10.97843 -10.93275 -10.73203 -10.71371 -10.62750 -10.42801 -9.91332 -9.57494 -8.96150 -8.93928 -8.39898 -7.92106 -7.14222 -6.90608 -6.09167 -4.36058 2.83018 3.12010 3.19536 3.21169 3.30507 3.76866 3.83252 4.09858 4.73279 4.76202 4.81861 4.94153 4.98640 5.26773 5.32486 5.47753 5.49579 5.56034 5.72058 5.84304 5.90041 5.92225 6.04010 6.09297 6.15317 6.28128 6.36501 6.52517 6.72470 6.87252 6.88918 7.23074 7.28491 7.60008 7.62597 7.68573 7.85041 8.11730 8.25204 8.51806 8.79229 9.09224 9.36426 10.29452 10.52714 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.006016 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.725744 B = 4653.343728 C = 5838.703144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.119 4.119 4 H 0.074 0.926 5 C -0.158 4.158 6 C 0.081 3.919 7 H 0.090 0.910 8 N -0.826 5.826 9 C 0.478 3.522 10 O -0.398 6.398 11 N -0.666 5.666 12 C 0.372 3.628 13 C -0.359 4.359 14 C -0.036 4.036 15 C -0.307 4.307 16 C 0.271 3.729 17 C -0.426 4.426 18 H 0.081 0.919 19 C 0.058 3.942 20 N -0.653 5.653 21 Si 0.895 3.105 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.267 1.267 25 N -0.472 5.472 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.352 0.648 35 H 0.338 0.662 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.164 -10.641 -4.249 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.140 4.140 4 H 0.093 0.907 5 C -0.216 4.216 6 C -0.035 4.035 7 H 0.108 0.892 8 N -0.357 5.357 9 C 0.258 3.742 10 O -0.260 6.260 11 N -0.314 5.314 12 C 0.133 3.867 13 C -0.385 4.385 14 C -0.061 4.061 15 C -0.330 4.330 16 C 0.146 3.854 17 C -0.457 4.457 18 H 0.099 0.901 19 C -0.172 4.172 20 N -0.271 5.271 21 Si 0.720 3.280 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.192 1.192 25 N -0.191 5.191 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.247 -10.787 -2.637 12.741 hybrid contribution -0.938 0.380 -0.572 1.162 sum -7.185 -10.407 -3.208 13.047 Atomic orbital electron populations 1.21800 0.95707 1.01322 1.02134 1.21592 0.96188 0.96068 1.01812 1.21885 0.95839 0.96476 0.99821 0.90713 1.22028 1.01553 1.01796 0.96215 1.21464 0.92908 0.94624 0.94517 0.89236 1.58525 1.67815 1.05821 1.03557 1.20476 0.81083 0.87351 0.85256 1.91127 1.39985 1.65803 1.29089 1.43562 1.69466 1.09524 1.08855 1.18647 0.93002 0.83836 0.91168 1.20492 1.25674 0.96479 0.95810 1.20548 0.95562 0.93633 0.96313 1.21614 1.17398 1.00019 0.93972 1.18387 0.88115 0.86848 0.92082 1.19541 1.38491 0.97246 0.90382 0.90081 1.26165 0.95464 0.95089 1.00451 1.70298 1.23464 1.04663 1.28714 0.86594 0.79887 0.79710 0.81830 1.19263 1.20398 1.19209 1.68716 1.18024 1.10654 1.21735 0.92341 0.92956 0.92791 0.91780 0.92189 0.91070 0.92606 0.92425 0.83349 0.84794 0.76926 0.89205 0.88736 0.88671 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.12 -1.10 5.20 -26.73 -0.14 -1.24 16 3 C -0.12 -1.44 2.12 -90.62 -0.19 -1.63 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 5 C -0.16 -1.86 8.05 37.16 0.30 -1.56 16 6 C 0.08 1.16 2.81 -68.87 -0.19 0.96 16 7 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 8 N -0.83 -11.64 8.87 -5.66 -0.05 -11.69 16 9 C 0.48 9.60 6.52 -10.99 -0.07 9.53 16 10 O -0.40 -9.98 12.03 5.56 0.07 -9.92 16 11 N -0.67 -13.12 3.91 -11.40 -0.04 -13.16 16 12 C 0.37 9.15 7.43 -154.98 -1.15 8.00 16 13 C -0.36 -8.14 9.95 -38.89 -0.39 -8.53 16 14 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 15 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 16 C 0.27 7.71 6.55 -85.00 -0.56 7.16 16 17 C -0.43 -11.89 9.14 -37.74 -0.34 -12.24 16 18 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16 19 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 20 N -0.65 -18.26 9.00 55.55 0.50 -17.76 16 21 Si 0.90 19.54 29.56 -169.99 -5.02 14.51 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 N -0.47 -13.37 5.74 -10.25 -0.06 -13.43 16 26 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 6.51 -51.93 -0.34 0.18 16 31 H 0.07 1.03 6.00 -51.93 -0.31 0.72 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.35 5.33 8.58 -39.29 -0.34 4.99 16 35 H 0.34 3.66 7.28 -39.29 -0.29 3.37 16 36 H 0.40 6.16 7.85 -40.82 -0.32 5.84 16 37 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -32.43 321.85 -8.64 -41.07 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -5.63 Total: 14.06 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.25 Total: -8.55 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.35 Total: -56.04 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.43 -8.64 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337077376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.929 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds