Wall clock time and date at job start Mon Mar 30 2020 02:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 H 1.08995 * 109.46938 * 304.99676 * 3 2 1 5 5 C 1.53000 * 109.47228 * 65.00119 * 3 2 1 6 6 C 1.53004 * 109.47106 * 184.99822 * 3 2 1 7 7 H 1.09007 * 109.46579 * 60.00156 * 6 3 2 8 8 N 1.46896 * 109.47553 * 300.00231 * 6 3 2 9 9 C 1.50701 * 109.46878 * 179.97438 * 6 3 2 10 10 O 1.21270 * 119.99482 * 100.00746 * 9 6 3 11 11 N 1.34780 * 120.00288 * 279.99920 * 9 6 3 12 12 C 1.39265 * 119.99699 * 174.85970 * 11 9 6 13 13 C 1.39670 * 119.57075 * 185.39498 * 12 11 9 14 14 C 1.38657 * 119.49535 * 179.74606 * 13 12 11 15 15 C 1.38339 * 118.66638 * 0.52155 * 14 13 12 16 16 C 1.40584 * 119.13400 * 359.74701 * 15 14 13 17 17 C 1.41335 * 119.78863 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00700 * 359.96873 * 17 16 15 19 19 C 1.40028 * 119.99811 * 179.97438 * 17 16 15 20 20 N 1.30747 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00134 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46963 * 60.00308 * 21 19 17 23 23 H 1.48504 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47292 * 300.00280 * 21 19 17 25 25 N 1.31904 * 119.57605 * 5.66880 * 12 11 9 26 26 H 1.08998 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46726 * 299.99778 * 1 2 3 28 28 H 1.08996 * 109.47440 * 59.99995 * 1 2 3 29 29 H 1.08999 * 109.47444 * 240.00060 * 2 1 3 30 30 H 1.09006 * 109.47474 * 120.00025 * 2 1 3 31 31 H 1.08994 * 109.47468 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.46837 * 299.99895 * 5 3 2 33 33 H 1.09005 * 109.47002 * 59.99909 * 5 3 2 34 34 H 1.00900 * 110.99696 * 300.00316 * 8 6 3 35 35 H 1.00903 * 110.99706 * 63.94833 * 8 6 3 36 36 H 0.97001 * 119.99769 * 354.86280 * 11 9 6 37 37 H 1.08005 * 120.25187 * 359.97438 * 13 12 11 38 38 H 1.07995 * 120.66704 * 180.26085 * 14 13 12 39 39 H 1.08003 * 120.43480 * 179.76820 * 15 14 13 40 40 H 0.96996 * 120.00099 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 1 3.8532 0.9570 -1.0571 8 7 4.1506 0.7179 1.0088 9 6 4.0671 2.8652 -0.1263 10 8 4.5255 3.3466 0.8880 11 7 4.0069 3.6008 -1.2541 12 6 4.3707 4.9449 -1.2289 13 6 4.1982 5.7271 -2.3731 14 6 4.5560 7.0665 -2.3446 15 6 5.0867 7.5870 -1.1780 16 6 5.2408 6.7466 -0.0615 17 6 5.7811 7.2640 1.1376 18 1 6.0746 8.3018 1.1941 19 6 5.9360 6.4310 2.2524 20 7 5.5804 5.1746 2.1842 21 14 6.6508 7.1146 3.8371 22 1 5.7908 8.2196 4.3317 23 1 6.7092 6.0383 4.8586 24 1 8.0199 7.6295 3.5810 25 7 4.8786 5.4613 -0.1266 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9982 3.1543 1.3072 32 1 0.5490 2.1253 1.3969 33 1 2.0699 1.5875 2.1492 34 1 3.8977 1.1504 1.8845 35 1 3.8802 -0.2541 0.9942 36 1 3.7102 3.1940 -2.0832 37 1 3.7859 5.2930 -3.2720 38 1 4.4268 7.6897 -3.2171 39 1 5.3786 8.6255 -1.1253 40 1 5.6874 4.5977 2.9565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337077377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:30 Heat of formation + Delta-G solvation = 9.881709 kcal Electronic energy + Delta-G solvation = -22163.952651 eV Core-core repulsion = 18979.055564 eV Total energy + Delta-G solvation = -3184.897087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.64265 -38.01435 -36.45893 -34.05830 -32.95152 -32.54975 -30.26729 -29.41179 -28.98648 -26.34338 -25.38637 -24.13577 -21.80961 -21.09317 -19.95112 -18.86500 -17.65136 -16.61852 -16.12774 -15.44692 -15.23892 -14.72752 -14.44797 -14.38043 -13.74950 -13.66624 -13.55221 -13.36661 -12.83312 -12.58030 -12.22992 -12.04828 -11.85306 -11.70806 -11.29164 -11.14561 -11.02553 -10.93539 -10.73283 -10.66616 -10.62358 -10.42900 -9.91231 -9.59010 -8.96047 -8.92225 -8.39083 -7.92022 -7.13881 -6.90819 -6.09137 -4.35880 2.83342 3.12171 3.19463 3.21144 3.30548 3.78256 3.84162 4.09877 4.71941 4.79588 4.82770 4.98280 4.99863 5.20222 5.40829 5.46931 5.49382 5.62408 5.70966 5.85290 5.91498 5.98261 6.08569 6.10893 6.15546 6.25796 6.47740 6.52970 6.73046 6.87509 6.89192 7.25416 7.28897 7.60488 7.64454 7.69181 7.85200 8.12275 8.25481 8.52461 8.79414 9.09422 9.37379 10.29500 10.52706 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.006076 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.204401 B = 4607.506824 C = 5757.621759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.120 4.120 4 H 0.076 0.924 5 C -0.151 4.151 6 C 0.080 3.920 7 H 0.089 0.911 8 N -0.825 5.825 9 C 0.478 3.522 10 O -0.396 6.396 11 N -0.668 5.668 12 C 0.373 3.627 13 C -0.359 4.359 14 C -0.036 4.036 15 C -0.307 4.307 16 C 0.271 3.729 17 C -0.426 4.426 18 H 0.081 0.919 19 C 0.058 3.942 20 N -0.652 5.652 21 Si 0.895 3.105 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.267 1.267 25 N -0.472 5.472 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.352 0.648 35 H 0.337 0.663 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 -10.439 -2.873 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.141 4.141 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.036 4.036 7 H 0.107 0.893 8 N -0.358 5.358 9 C 0.258 3.742 10 O -0.258 6.258 11 N -0.315 5.315 12 C 0.134 3.866 13 C -0.385 4.385 14 C -0.061 4.061 15 C -0.330 4.330 16 C 0.146 3.854 17 C -0.457 4.457 18 H 0.099 0.901 19 C -0.172 4.172 20 N -0.271 5.271 21 Si 0.720 3.280 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.192 1.192 25 N -0.191 5.191 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.598 -10.666 -1.438 12.624 hybrid contribution -1.014 0.419 -0.435 1.180 sum -7.613 -10.247 -1.873 12.902 Atomic orbital electron populations 1.21798 0.95702 1.01310 1.02128 1.21580 0.96202 0.96086 1.01770 1.21844 0.95912 0.96479 0.99823 0.90552 1.21883 1.00858 1.01909 0.96207 1.21433 0.91672 0.94210 0.96269 0.89293 1.58537 1.66046 1.05411 1.05778 1.20464 0.81731 0.86945 0.85033 1.91123 1.35724 1.69036 1.29933 1.43434 1.67129 1.09184 1.11777 1.18635 0.92895 0.83534 0.91496 1.20497 1.23584 0.95974 0.98424 1.20548 0.95452 0.93829 0.96238 1.21614 1.15500 0.99961 0.95947 1.18386 0.88672 0.86565 0.91807 1.19537 1.34716 0.96956 0.94449 0.90100 1.26164 0.95873 0.95080 1.00043 1.70302 1.25047 1.03086 1.28639 0.86599 0.80295 0.79413 0.81736 1.19281 1.20401 1.19219 1.68719 1.16360 1.12750 1.21254 0.92979 0.92428 0.92697 0.91889 0.92127 0.91300 0.92657 0.92844 0.83168 0.84910 0.77074 0.89211 0.88742 0.88675 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.10 4.93 -26.73 -0.13 -1.23 16 3 C -0.12 -1.44 2.26 -90.62 -0.20 -1.64 16 4 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.15 -2.08 8.36 37.16 0.31 -1.77 16 6 C 0.08 1.14 3.03 -68.86 -0.21 0.93 16 7 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 8 N -0.83 -11.58 8.82 -5.65 -0.05 -11.63 16 9 C 0.48 9.51 5.89 -10.98 -0.06 9.45 16 10 O -0.40 -9.75 11.73 5.57 0.07 -9.69 16 11 N -0.67 -13.22 5.38 -11.40 -0.06 -13.28 16 12 C 0.37 9.19 7.43 -154.98 -1.15 8.04 16 13 C -0.36 -8.18 9.95 -38.89 -0.39 -8.57 16 14 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 15 C -0.31 -7.86 9.83 -38.66 -0.38 -8.24 16 16 C 0.27 7.70 6.55 -85.00 -0.56 7.15 16 17 C -0.43 -11.86 9.14 -37.73 -0.34 -12.21 16 18 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 19 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 20 N -0.65 -18.12 9.00 55.55 0.50 -17.62 16 21 Si 0.90 19.49 29.56 -169.99 -5.02 14.47 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 N -0.47 -13.31 5.74 -10.26 -0.06 -13.37 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 7.03 -51.93 -0.37 0.17 16 31 H 0.07 1.23 7.00 -51.93 -0.36 0.87 16 32 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 33 H 0.05 0.70 6.67 -51.93 -0.35 0.35 16 34 H 0.35 5.33 6.75 -39.29 -0.27 5.07 16 35 H 0.34 3.66 7.51 -39.29 -0.30 3.37 16 36 H 0.40 6.12 8.70 -40.82 -0.36 5.77 16 37 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -32.21 322.05 -8.63 -40.84 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.60 Total: 14.27 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.25 Total: -8.85 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.33 Total: -55.90 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.21 -8.63 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337077377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.721 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds