Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 H 1.08999 * 109.46605 * 57.63858 * 3 2 1 5 5 C 1.52998 * 109.47193 * 297.63728 * 3 2 1 6 6 N 1.46504 * 109.46858 * 177.63858 * 3 2 1 7 7 N 1.28437 * 125.19848 * 66.76884 * 6 3 2 8 8 C 1.30876 * 110.95378 * 179.97438 * 7 6 3 9 9 C 1.39643 * 107.87830 * 0.02562 * 8 7 6 10 10 C 1.36653 * 125.19212 * 246.74694 * 6 3 2 11 11 C 1.47018 * 126.89450 * 359.76073 * 10 6 3 12 12 O 1.21676 * 120.00518 * 0.96449 * 11 10 6 13 13 N 1.34780 * 119.99877 * 180.96769 * 11 10 6 14 14 C 1.36841 * 119.99880 * 183.22528 * 13 11 10 15 15 H 1.08001 * 120.00131 * 346.73217 * 14 13 11 16 16 C 1.39054 * 119.99498 * 166.72898 * 14 13 11 17 17 N 1.31356 * 120.00222 * 343.46691 * 16 14 13 18 18 Si 1.86805 * 119.99708 * 163.47238 * 16 14 13 19 19 H 1.48504 * 109.47150 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47234 * 119.99950 * 18 16 14 21 21 H 1.48500 * 109.46705 * 239.99835 * 18 16 14 22 22 C 1.46496 * 119.99868 * 3.23118 * 13 11 10 23 23 C 1.53002 * 117.50169 * 141.72320 * 22 13 11 24 24 C 1.52997 * 117.50514 * 73.09462 * 22 13 11 25 25 H 1.08993 * 109.47171 * 56.92038 * 1 2 3 26 26 H 1.08998 * 109.46832 * 176.91948 * 1 2 3 27 27 H 1.09005 * 109.46803 * 296.91298 * 1 2 3 28 28 H 1.09000 * 109.47174 * 240.00077 * 2 1 3 29 29 H 1.09004 * 109.47702 * 120.00041 * 2 1 3 30 30 H 1.08995 * 109.46815 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.46799 * 299.99883 * 5 3 2 32 32 H 1.08998 * 109.46509 * 59.99687 * 5 3 2 33 33 H 1.07995 * 126.06036 * 180.02562 * 8 7 6 34 34 H 1.08006 * 127.32553 * 180.02562 * 9 8 7 35 35 H 0.97000 * 120.00083 * 185.13327 * 17 16 14 36 36 H 1.09006 * 115.54804 * 287.42521 * 22 13 11 37 37 H 1.09000 * 117.49381 * 359.97438 * 23 22 13 38 38 H 1.08999 * 117.49982 * 145.01890 * 23 22 13 39 39 H 1.08997 * 117.50160 * 214.98163 * 24 22 13 40 40 H 1.09005 * 117.49445 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6424 1.9684 0.8681 5 6 1.5791 2.1465 -1.2779 6 7 3.5039 1.4429 0.0569 7 7 4.2810 1.0159 -0.8723 8 6 5.5371 1.1478 -0.5293 9 6 5.5760 1.7149 0.7462 10 6 4.2512 1.8981 1.1066 11 6 3.7496 2.4723 2.3637 12 8 2.5516 2.5640 2.5554 13 7 4.6169 2.8974 3.3037 14 6 4.1514 3.3707 4.5002 15 1 3.1038 3.6061 4.6171 16 6 5.0271 3.5485 5.5657 17 7 6.2083 2.9742 5.5479 18 14 4.5235 4.6040 7.0223 19 1 3.1543 5.1342 6.7996 20 1 4.5415 3.7821 8.2590 21 1 5.4746 5.7354 7.1660 22 6 6.0581 2.8527 3.0444 23 6 6.9061 4.0145 3.5660 24 6 6.6322 3.8800 2.0667 25 1 -0.3633 0.5609 -0.8610 26 1 -0.3633 -1.0262 -0.0552 27 1 -0.3633 0.4652 0.9164 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.9428 3.1739 -1.2780 31 1 1.9767 1.6205 -2.1459 32 1 0.4900 2.1461 -1.3202 33 1 6.3920 0.8677 -1.1268 34 1 6.4526 1.9596 1.3277 35 1 6.7895 3.0364 6.3220 36 1 6.5064 1.8592 3.0512 37 1 6.3916 4.8122 4.1018 38 1 7.9126 3.7854 3.9162 39 1 7.4584 3.5625 1.4306 40 1 5.9377 4.5894 1.6167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340128263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = 98.534728 kcal Electronic energy + Delta-G solvation = -22629.308809 eV Core-core repulsion = 19448.256005 eV Total energy + Delta-G solvation = -3181.052804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85035 -38.69613 -36.52649 -35.85534 -33.00468 -31.64835 -31.04320 -29.92560 -28.60978 -25.42093 -24.59804 -22.52032 -22.01359 -21.48779 -21.05868 -19.77675 -18.46456 -17.21789 -16.44897 -15.53190 -15.31221 -15.02379 -14.78310 -14.44627 -14.09758 -13.64366 -13.50240 -13.29495 -12.90306 -12.63710 -12.25040 -12.06970 -12.01027 -11.55723 -11.51044 -11.35592 -11.26003 -10.79782 -10.63629 -10.47070 -10.42865 -10.40222 -10.15890 -10.05556 -9.09026 -8.78463 -8.52120 -8.46581 -8.16002 -7.85265 -6.41890 -3.91655 2.15510 3.05540 3.08322 3.18018 3.25023 3.30929 3.99397 4.19532 4.63919 4.83981 4.88070 5.02480 5.07704 5.29587 5.36114 5.44273 5.57722 5.61465 5.66629 5.86544 5.89602 5.94035 6.02132 6.04165 6.10099 6.15547 6.18538 6.34145 6.40093 6.41426 6.53821 6.54812 6.87555 7.01152 7.19391 7.24170 7.44132 7.49606 7.91459 8.32378 8.77419 9.01289 9.25346 9.82554 10.52682 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.006189 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.660738 B = 4523.347133 C = 5437.939972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.133 3.867 4 H 0.139 0.861 5 C -0.156 4.156 6 N -0.264 5.264 7 N -0.301 5.301 8 C -0.019 4.019 9 C -0.224 4.224 10 C 0.004 3.996 11 C 0.500 3.500 12 O -0.598 6.598 13 N -0.388 5.388 14 C -0.305 4.305 15 H 0.109 0.891 16 C 0.033 3.967 17 N -0.852 5.852 18 Si 0.924 3.076 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.111 3.889 23 C -0.088 4.088 24 C -0.232 4.232 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.270 0.730 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -1.709 -8.003 8.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.033 3.967 4 H 0.157 0.843 5 C -0.214 4.214 6 N -0.052 5.052 7 N -0.133 5.133 8 C -0.196 4.196 9 C -0.253 4.253 10 C -0.124 4.124 11 C 0.290 3.710 12 O -0.486 6.486 13 N -0.103 5.103 14 C -0.432 4.432 15 H 0.126 0.874 16 C -0.172 4.172 17 N -0.488 5.488 18 Si 0.750 3.250 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.203 1.203 22 C 0.005 3.995 23 C -0.127 4.127 24 C -0.271 4.271 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.190 0.810 34 H 0.192 0.808 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.162 -1.984 -8.630 9.115 hybrid contribution 0.636 0.568 1.391 1.632 sum -1.526 -1.416 -7.239 7.532 Atomic orbital electron populations 1.21780 0.94601 1.01862 1.02412 1.21799 0.96505 0.95370 1.02861 1.22021 0.73725 0.98395 1.02569 0.84325 1.22104 1.01595 1.00742 0.96928 1.45723 1.06779 1.42767 1.09894 1.72925 1.02818 1.20413 1.17133 1.23409 0.93669 1.05514 0.97012 1.23166 0.96888 1.07294 0.97933 1.21788 0.91301 1.06334 0.92964 1.16545 0.85953 0.85092 0.83423 1.90515 1.14866 1.62794 1.80383 1.42867 1.03456 1.51108 1.12843 1.19818 0.96381 1.39746 0.87305 0.87360 1.25276 0.95205 0.97724 0.99036 1.70122 1.09199 1.39889 1.29611 0.85886 0.79159 0.79644 0.80301 1.19085 1.20570 1.20337 1.21174 0.81985 0.94602 1.01701 1.22665 0.99445 0.99667 0.90924 1.23866 1.03452 1.04567 0.95194 0.92260 0.92432 0.92008 0.91308 0.91501 0.92326 0.91539 0.90677 0.80962 0.80781 0.91929 0.87808 0.89353 0.89699 0.89365 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.69 37.16 0.36 -1.43 16 2 C -0.13 -1.92 5.71 -26.73 -0.15 -2.07 16 3 C 0.13 2.33 3.03 -67.92 -0.21 2.12 16 4 H 0.14 2.79 5.36 -51.93 -0.28 2.51 16 5 C -0.16 -2.25 8.99 37.16 0.33 -1.91 16 6 N -0.26 -5.24 3.10 -50.69 -0.16 -5.40 16 7 N -0.30 -5.66 11.50 30.58 0.35 -5.30 16 8 C -0.02 -0.33 12.03 -17.43 -0.21 -0.54 16 9 C -0.22 -4.30 8.51 -38.96 -0.33 -4.63 16 10 C 0.00 0.09 6.85 -82.06 -0.56 -0.47 16 11 C 0.50 12.59 7.59 -12.70 -0.10 12.49 16 12 O -0.60 -16.15 13.99 5.21 0.07 -16.08 16 13 N -0.39 -9.77 2.94 -109.08 -0.32 -10.09 16 14 C -0.30 -8.11 9.20 -15.01 -0.14 -8.24 16 15 H 0.11 3.04 7.27 -52.49 -0.38 2.66 16 16 C 0.03 0.81 3.81 -17.45 -0.07 0.74 16 17 N -0.85 -20.68 9.15 55.50 0.51 -20.17 16 18 Si 0.92 19.51 29.59 -169.99 -5.03 14.48 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.11 2.41 2.64 -67.93 -0.18 2.24 16 23 C -0.09 -1.81 7.08 -26.73 -0.19 -2.00 16 24 C -0.23 -4.32 8.07 -26.73 -0.22 -4.54 16 25 H 0.06 0.62 6.34 -51.93 -0.33 0.29 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.07 0.88 6.42 -51.93 -0.33 0.55 16 33 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 34 H 0.18 3.14 3.33 -52.48 -0.17 2.96 16 35 H 0.27 6.19 8.32 -40.82 -0.34 5.85 16 36 H 0.10 2.27 7.13 -51.93 -0.37 1.90 16 37 H 0.09 1.99 6.67 -51.93 -0.35 1.64 16 38 H 0.08 1.62 8.13 -51.93 -0.42 1.20 16 39 H 0.09 1.39 7.59 -51.93 -0.39 0.99 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -28.73 316.31 -7.00 -35.74 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.54 Total: 10.29 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.65 Total: -8.23 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.38 Total: -40.96 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.07 Total: -16.08 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.73 -7.00 -35.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340128263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.271 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds