Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 H 1.08999 * 109.46605 * 57.63858 * 3 2 1 5 5 C 1.52998 * 109.47193 * 297.63728 * 3 2 1 6 6 N 1.46504 * 109.46858 * 177.63858 * 3 2 1 7 7 N 1.28437 * 125.19848 * 66.76884 * 6 3 2 8 8 C 1.30876 * 110.95378 * 179.97438 * 7 6 3 9 9 C 1.39643 * 107.87830 * 0.02562 * 8 7 6 10 10 C 1.36653 * 125.19212 * 246.74694 * 6 3 2 11 11 C 1.47018 * 126.89450 * 359.76073 * 10 6 3 12 12 O 1.21676 * 120.00518 * 0.96449 * 11 10 6 13 13 N 1.34780 * 119.99877 * 180.96769 * 11 10 6 14 14 C 1.36841 * 119.99880 * 183.22528 * 13 11 10 15 15 H 1.08001 * 120.00131 * 346.73217 * 14 13 11 16 16 C 1.39054 * 119.99498 * 166.72898 * 14 13 11 17 17 N 1.31356 * 120.00222 * 343.46691 * 16 14 13 18 18 Si 1.86805 * 119.99708 * 163.47238 * 16 14 13 19 19 H 1.48504 * 109.47150 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47234 * 119.99950 * 18 16 14 21 21 H 1.48500 * 109.46705 * 239.99835 * 18 16 14 22 22 C 1.46496 * 119.99868 * 3.23118 * 13 11 10 23 23 C 1.53002 * 117.50169 * 141.72320 * 22 13 11 24 24 C 1.52997 * 117.50514 * 73.09462 * 22 13 11 25 25 H 1.08993 * 109.47171 * 56.92038 * 1 2 3 26 26 H 1.08998 * 109.46832 * 176.91948 * 1 2 3 27 27 H 1.09005 * 109.46803 * 296.91298 * 1 2 3 28 28 H 1.09000 * 109.47174 * 240.00077 * 2 1 3 29 29 H 1.09004 * 109.47702 * 120.00041 * 2 1 3 30 30 H 1.08995 * 109.46815 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.46799 * 299.99883 * 5 3 2 32 32 H 1.08998 * 109.46509 * 59.99687 * 5 3 2 33 33 H 1.07995 * 126.06036 * 180.02562 * 8 7 6 34 34 H 1.08006 * 127.32553 * 180.02562 * 9 8 7 35 35 H 0.97000 * 120.00083 * 185.13327 * 17 16 14 36 36 H 1.09006 * 115.54804 * 287.42521 * 22 13 11 37 37 H 1.09000 * 117.49381 * 359.97438 * 23 22 13 38 38 H 1.08999 * 117.49982 * 145.01890 * 23 22 13 39 39 H 1.08997 * 117.50160 * 214.98163 * 24 22 13 40 40 H 1.09005 * 117.49445 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6424 1.9684 0.8681 5 6 1.5791 2.1465 -1.2779 6 7 3.5039 1.4429 0.0569 7 7 4.2810 1.0159 -0.8723 8 6 5.5371 1.1478 -0.5293 9 6 5.5760 1.7149 0.7462 10 6 4.2512 1.8981 1.1066 11 6 3.7496 2.4723 2.3637 12 8 2.5516 2.5640 2.5554 13 7 4.6169 2.8974 3.3037 14 6 4.1514 3.3707 4.5002 15 1 3.1038 3.6061 4.6171 16 6 5.0271 3.5485 5.5657 17 7 6.2083 2.9742 5.5479 18 14 4.5235 4.6040 7.0223 19 1 3.1543 5.1342 6.7996 20 1 4.5415 3.7821 8.2590 21 1 5.4746 5.7354 7.1660 22 6 6.0581 2.8527 3.0444 23 6 6.9061 4.0145 3.5660 24 6 6.6322 3.8800 2.0667 25 1 -0.3633 0.5609 -0.8610 26 1 -0.3633 -1.0262 -0.0552 27 1 -0.3633 0.4652 0.9164 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.9428 3.1739 -1.2780 31 1 1.9767 1.6205 -2.1459 32 1 0.4900 2.1461 -1.3202 33 1 6.3920 0.8677 -1.1268 34 1 6.4526 1.9596 1.3277 35 1 6.7895 3.0364 6.3220 36 1 6.5064 1.8592 3.0512 37 1 6.3916 4.8122 4.1018 38 1 7.9126 3.7854 3.9162 39 1 7.4584 3.5625 1.4306 40 1 5.9377 4.5894 1.6167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340128263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = 82.241818 kcal Electronic energy + Delta-G solvation = -22630.015322 eV Core-core repulsion = 19448.256005 eV Total energy + Delta-G solvation = -3181.759318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.35506 -40.48996 -38.23331 -37.25513 -34.83884 -33.48675 -32.38698 -31.54256 -29.84627 -27.29276 -25.83653 -24.21780 -23.54353 -22.98134 -22.67568 -21.33126 -19.94224 -19.07884 -18.12738 -17.22641 -16.93898 -16.63483 -16.15947 -15.97323 -15.83221 -15.22444 -15.13359 -14.56948 -14.49829 -14.07933 -13.84314 -13.51620 -13.23686 -13.13136 -13.00636 -12.72565 -12.65943 -12.39697 -12.18391 -12.08954 -12.00538 -11.86706 -11.78389 -11.62824 -10.75834 -10.52345 -10.36648 -10.00037 -9.73174 -9.69245 -8.30503 -5.90675 0.51608 1.38250 1.41583 1.51878 1.64385 1.87389 2.24441 2.38393 2.89413 3.09621 3.27963 3.55197 3.78270 3.82804 4.04827 4.16622 4.26115 4.37032 4.39777 4.44476 4.46793 4.52472 4.57783 4.77802 4.81329 4.90014 4.92276 4.95799 5.02723 5.10212 5.21082 5.25211 5.32484 5.37925 5.46557 5.54766 5.78099 5.97549 6.02533 6.42765 7.06362 7.27753 7.38263 7.93134 8.61711 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.006189 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.660738 B = 4523.347133 C = 5437.939972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.123 3.877 4 H 0.105 0.895 5 C -0.145 4.145 6 N -0.268 5.268 7 N -0.300 5.300 8 C -0.011 4.011 9 C -0.212 4.212 10 C -0.034 4.034 11 C 0.485 3.515 12 O -0.635 6.635 13 N -0.398 5.398 14 C -0.349 4.349 15 H 0.076 0.924 16 C 0.014 3.986 17 N -0.854 5.854 18 Si 0.982 3.018 19 H -0.279 1.279 20 H -0.272 1.272 21 H -0.262 1.262 22 C 0.088 3.912 23 C -0.088 4.088 24 C -0.197 4.197 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.219 0.781 34 H 0.187 0.813 35 H 0.278 0.722 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -2.052 -9.466 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C 0.022 3.978 4 H 0.123 0.877 5 C -0.202 4.202 6 N -0.056 5.056 7 N -0.132 5.132 8 C -0.187 4.187 9 C -0.241 4.241 10 C -0.162 4.162 11 C 0.275 3.725 12 O -0.526 6.526 13 N -0.112 5.112 14 C -0.477 4.477 15 H 0.094 0.906 16 C -0.192 4.192 17 N -0.489 5.489 18 Si 0.806 3.194 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.016 4.016 23 C -0.126 4.126 24 C -0.235 4.235 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.235 0.765 34 H 0.204 0.796 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.559 -2.332 -10.096 10.377 hybrid contribution 0.185 0.635 1.828 1.944 sum -0.375 -1.697 -8.269 8.449 Atomic orbital electron populations 1.21771 0.92149 1.03426 1.02736 1.21747 0.98572 0.93499 1.01865 1.22154 0.72997 0.99854 1.02755 0.87714 1.22056 1.03373 0.99479 0.95327 1.45972 1.07575 1.42524 1.09496 1.72934 1.03501 1.20042 1.16697 1.24111 0.94288 1.03934 0.96415 1.23369 0.95951 1.06160 0.98611 1.21578 0.92965 1.08799 0.92809 1.17120 0.85725 0.84932 0.84691 1.90472 1.16416 1.64212 1.81511 1.43022 1.04922 1.50846 1.12410 1.19666 0.95747 1.43034 0.89251 0.90599 1.25848 0.95071 0.97785 1.00469 1.70166 1.09233 1.39135 1.30391 0.85050 0.78407 0.78517 0.77457 1.20419 1.19747 1.18656 1.21322 0.80428 0.95261 1.04635 1.22584 0.99530 0.98189 0.92328 1.23844 1.03254 1.01947 0.94462 0.90114 0.90455 0.93276 0.90324 0.94237 0.93652 0.90641 0.87851 0.76469 0.79630 0.91123 0.87898 0.91858 0.87980 0.85226 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.69 71.98 0.70 -2.61 16 2 C -0.12 -3.58 5.71 30.60 0.17 -3.40 16 3 C 0.12 4.36 3.03 44.99 0.14 4.50 16 4 H 0.11 4.50 5.36 -2.39 -0.01 4.49 16 5 C -0.14 -4.04 8.99 71.98 0.65 -3.39 16 6 N -0.27 -10.64 3.10 -314.28 -0.97 -11.62 16 7 N -0.30 -10.71 11.50 -57.16 -0.66 -11.36 16 8 C -0.01 -0.35 12.03 85.17 1.02 0.67 16 9 C -0.21 -7.80 8.51 22.68 0.19 -7.60 16 10 C -0.03 -1.50 6.85 40.76 0.28 -1.22 16 11 C 0.48 25.71 7.59 86.54 0.66 26.37 16 12 O -0.64 -37.01 13.99 -4.27 -0.06 -37.07 16 13 N -0.40 -20.88 2.94 -617.25 -1.81 -22.69 16 14 C -0.35 -19.56 9.20 84.11 0.77 -18.78 16 15 H 0.08 4.61 7.27 -2.91 -0.02 4.59 16 16 C 0.01 0.69 3.81 84.96 0.32 1.02 16 17 N -0.85 -41.24 9.15 21.68 0.20 -41.04 16 18 Si 0.98 40.48 29.59 68.60 2.03 42.51 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 C 0.09 3.83 2.64 44.99 0.12 3.94 16 23 C -0.09 -3.50 7.08 30.60 0.22 -3.29 16 24 C -0.20 -6.98 8.07 30.60 0.25 -6.73 16 25 H 0.08 1.51 6.34 -2.39 -0.02 1.50 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.97 8.07 -2.38 -0.02 1.95 16 32 H 0.10 2.24 6.42 -2.39 -0.02 2.22 16 33 H 0.22 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.19 6.25 3.33 -2.91 -0.01 6.24 16 35 H 0.28 12.43 8.32 -92.71 -0.77 11.66 16 36 H 0.10 4.44 7.13 -2.38 -0.02 4.42 16 37 H 0.06 2.85 6.67 -2.39 -0.02 2.83 16 38 H 0.10 3.68 8.13 -2.39 -0.02 3.66 16 39 H 0.13 3.54 7.59 -2.39 -0.02 3.52 16 40 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -65.93 316.31 5.26 -60.67 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.05 Total: 31.13 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.49 Total: -10.54 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -3.24 Total: -86.70 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.06 Total: -37.07 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -65.93 5.26 -60.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340128263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.913 kcal (2) G-P(sol) polarization free energy of solvation -65.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds