Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 C 1.50703 * 109.47480 * 239.99861 * 2 1 3 5 5 H 1.08000 * 120.00222 * 240.00459 * 4 2 1 6 6 C 1.37885 * 119.99727 * 59.99903 * 4 2 1 7 7 N 1.31508 * 119.99899 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99936 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47064 * 89.99946 * 8 6 4 10 10 H 1.48498 * 109.47163 * 210.00093 * 8 6 4 11 11 H 1.48498 * 109.47256 * 329.99980 * 8 6 4 12 12 C 1.53004 * 109.46878 * 120.00190 * 2 1 3 13 13 N 1.46501 * 109.46976 * 299.99879 * 12 2 1 14 14 C 1.34777 * 120.00098 * 180.02562 * 13 12 2 15 15 O 1.21284 * 119.99577 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00301 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47301 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47299 * 179.97438 * 17 16 14 19 19 C 1.38602 * 120.79596 * 90.00262 * 18 17 16 20 20 N 1.32331 * 119.10423 * 179.97438 * 19 18 17 21 21 C 1.31794 * 120.81888 * 359.97438 * 20 19 18 22 22 N 1.31795 * 121.75372 * 0.02562 * 21 20 19 23 23 C 1.32334 * 120.81807 * 0.02562 * 22 21 20 24 24 H 1.08991 * 109.47357 * 300.00031 * 1 2 3 25 25 H 1.09002 * 109.47006 * 59.99895 * 1 2 3 26 26 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47145 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47237 * 299.99963 * 3 2 1 29 29 H 1.09004 * 109.47189 * 59.99857 * 3 2 1 30 30 H 0.97001 * 120.00182 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46726 * 179.97438 * 12 2 1 32 32 H 1.08992 * 109.47186 * 60.00171 * 12 2 1 33 33 H 0.96997 * 120.00096 * 0.02562 * 13 12 2 34 34 H 1.08998 * 109.47033 * 59.99689 * 16 14 13 35 35 H 1.09005 * 109.47292 * 299.99987 * 16 14 13 36 36 H 1.08998 * 109.46952 * 60.00104 * 17 16 14 37 37 H 1.08997 * 109.47566 * 300.00466 * 17 16 14 38 38 H 1.07994 * 120.45169 * 359.95292 * 19 18 17 39 39 H 1.08003 * 119.12654 * 179.71869 * 21 20 19 40 40 H 1.07998 * 120.44737 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7122 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6696 15 8 2.5747 -1.4770 3.7808 16 6 1.3747 0.2192 4.9000 17 6 1.8847 -0.5020 6.1492 18 6 1.3824 0.2084 7.3797 19 6 0.1738 -0.1445 7.9591 20 7 -0.2349 0.5012 9.0395 21 6 0.4918 1.4677 9.5638 22 7 1.6456 1.8301 9.0401 23 6 2.1178 1.2302 7.9591 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7096 1.1618 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9936 0.7577 2.3564 34 1 0.2847 0.2184 4.9000 35 1 1.7373 1.2471 4.9000 36 1 2.9747 -0.5016 6.1494 37 1 1.5219 -1.5298 6.1490 38 1 -0.4264 -0.9356 7.5346 39 1 0.1298 1.9797 10.4432 40 1 3.0638 1.5323 7.5348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460810248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = -8.887217 kcal Electronic energy + Delta-G solvation = -20739.478224 eV Core-core repulsion = 17553.767255 eV Total energy + Delta-G solvation = -3185.710969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29695 -39.39536 -36.52377 -34.88187 -33.96511 -33.32572 -31.14072 -30.28562 -26.36258 -25.77288 -25.40709 -24.86622 -24.39328 -22.18300 -20.02162 -18.81798 -17.91120 -17.87304 -17.11159 -15.83434 -15.43531 -15.29975 -14.95888 -14.71080 -14.34683 -13.93848 -13.87454 -13.65090 -13.13552 -12.98669 -12.57179 -12.38795 -12.23079 -11.45438 -11.29880 -11.23371 -11.09337 -11.08937 -10.89618 -10.72558 -10.42986 -10.23982 -9.81258 -9.68073 -9.55312 -9.49297 -9.24869 -8.82752 -8.50142 -8.35882 -6.05667 -4.15900 0.58752 0.78177 2.97313 3.25848 3.33055 3.36426 3.44974 3.68154 3.88436 3.94113 4.31871 4.36710 4.52663 4.55309 4.84404 5.07329 5.09583 5.21230 5.30466 5.46089 5.47863 5.86076 5.89656 6.11623 6.18848 6.28104 6.46197 6.65620 6.72997 6.77502 6.88343 6.97102 6.97877 7.30876 7.51270 7.65829 7.77632 7.96803 7.99366 8.10924 8.34523 8.63181 8.84939 9.50200 10.95753 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045221 B = 0.002848 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.032035 B = 9830.651206 C = 9981.195594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.503 3.497 15 O -0.554 6.554 16 C -0.137 4.137 17 C -0.056 4.056 18 C -0.181 4.181 19 C 0.149 3.851 20 N -0.519 5.519 21 C 0.282 3.718 22 N -0.519 5.519 23 C 0.149 3.851 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.194 0.806 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 2.257 17.813 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.289 3.711 15 O -0.433 6.433 16 C -0.178 4.178 17 C -0.095 4.095 18 C -0.185 4.185 19 C -0.016 4.016 20 N -0.232 5.232 21 C -0.005 4.005 22 N -0.232 5.232 23 C -0.016 4.016 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.186 0.814 39 H 0.211 0.789 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.510 2.148 18.543 18.728 hybrid contribution 0.288 -0.429 -1.684 1.762 sum -1.221 1.719 16.859 16.990 Atomic orbital electron populations 1.21834 0.97782 0.99178 1.00090 1.18354 0.92772 0.92751 0.90605 1.21834 0.98588 0.98361 1.00089 1.20989 1.31534 1.12115 0.89903 0.92440 1.24882 0.94850 0.94902 0.98879 1.69797 1.36694 1.22702 1.23270 0.86568 0.79331 0.79398 0.82568 1.20696 1.21249 1.19899 1.21720 0.98141 0.95787 0.83478 1.46345 1.52441 1.31770 1.06128 1.20467 0.80871 0.84879 0.84915 1.90679 1.38774 1.26799 1.87038 1.21663 1.02660 1.00791 0.92654 1.20214 1.02191 0.98934 0.88191 1.21803 0.97445 0.99304 0.99998 1.23239 0.92539 0.96012 0.89857 1.68440 1.34999 1.08497 1.11273 1.24967 0.86769 0.90745 0.98061 1.68442 1.14762 1.28730 1.11275 1.23236 0.98828 0.89732 0.89852 0.97519 0.89588 0.95437 0.95434 0.89579 0.97528 0.92976 0.92718 0.92727 0.76682 0.89010 0.89006 0.89395 0.89385 0.81432 0.78912 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.33 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 8 Si 0.89 20.47 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.72 -11.80 4.96 -60.29 -0.30 -12.10 16 14 C 0.50 7.68 7.83 -10.99 -0.09 7.59 16 15 O -0.55 -10.48 15.98 5.55 0.09 -10.39 16 16 C -0.14 -1.39 5.68 -27.89 -0.16 -1.55 16 17 C -0.06 -0.52 4.68 -27.89 -0.13 -0.65 16 18 C -0.18 -1.58 5.17 -104.36 -0.54 -2.12 16 19 C 0.15 1.34 11.01 -17.20 -0.19 1.15 16 20 N -0.52 -5.25 10.44 -14.58 -0.15 -5.40 16 21 C 0.28 2.62 12.29 -92.15 -1.13 1.49 16 22 N -0.52 -5.25 10.44 -14.58 -0.15 -5.40 16 23 C 0.15 1.34 11.01 -17.21 -0.19 1.15 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 5.90 6.16 -40.82 -0.25 5.64 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.19 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -29.77 331.24 -8.09 -37.86 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.78 Total: 3.72 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.29 Total: -5.96 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.08 Total: -45.67 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.77 -8.09 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460810248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.978 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds