Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 C 1.50703 * 109.47480 * 239.99861 * 2 1 3 5 5 H 1.08000 * 120.00222 * 240.00459 * 4 2 1 6 6 C 1.37885 * 119.99727 * 59.99903 * 4 2 1 7 7 N 1.31508 * 119.99899 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99936 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47064 * 89.99946 * 8 6 4 10 10 H 1.48498 * 109.47163 * 210.00093 * 8 6 4 11 11 H 1.48498 * 109.47256 * 329.99980 * 8 6 4 12 12 C 1.53004 * 109.46878 * 120.00190 * 2 1 3 13 13 N 1.46501 * 109.46976 * 299.99879 * 12 2 1 14 14 C 1.34777 * 120.00098 * 180.02562 * 13 12 2 15 15 O 1.21284 * 119.99577 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00301 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47301 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47299 * 179.97438 * 17 16 14 19 19 C 1.38602 * 120.79596 * 90.00262 * 18 17 16 20 20 N 1.32331 * 119.10423 * 179.97438 * 19 18 17 21 21 C 1.31794 * 120.81888 * 359.97438 * 20 19 18 22 22 N 1.31795 * 121.75372 * 0.02562 * 21 20 19 23 23 C 1.32334 * 120.81807 * 0.02562 * 22 21 20 24 24 H 1.08991 * 109.47357 * 300.00031 * 1 2 3 25 25 H 1.09002 * 109.47006 * 59.99895 * 1 2 3 26 26 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47145 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47237 * 299.99963 * 3 2 1 29 29 H 1.09004 * 109.47189 * 59.99857 * 3 2 1 30 30 H 0.97001 * 120.00182 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46726 * 179.97438 * 12 2 1 32 32 H 1.08992 * 109.47186 * 60.00171 * 12 2 1 33 33 H 0.96997 * 120.00096 * 0.02562 * 13 12 2 34 34 H 1.08998 * 109.47033 * 59.99689 * 16 14 13 35 35 H 1.09005 * 109.47292 * 299.99987 * 16 14 13 36 36 H 1.08998 * 109.46952 * 60.00104 * 17 16 14 37 37 H 1.08997 * 109.47566 * 300.00466 * 17 16 14 38 38 H 1.07994 * 120.45169 * 359.95292 * 19 18 17 39 39 H 1.08003 * 119.12654 * 179.71869 * 21 20 19 40 40 H 1.07998 * 120.44737 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7122 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6696 15 8 2.5747 -1.4770 3.7808 16 6 1.3747 0.2192 4.9000 17 6 1.8847 -0.5020 6.1492 18 6 1.3824 0.2084 7.3797 19 6 0.1738 -0.1445 7.9591 20 7 -0.2349 0.5012 9.0395 21 6 0.4918 1.4677 9.5638 22 7 1.6456 1.8301 9.0401 23 6 2.1178 1.2302 7.9591 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7096 1.1618 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9936 0.7577 2.3564 34 1 0.2847 0.2184 4.9000 35 1 1.7373 1.2471 4.9000 36 1 2.9747 -0.5016 6.1494 37 1 1.5219 -1.5298 6.1490 38 1 -0.4264 -0.9356 7.5346 39 1 0.1298 1.9797 10.4432 40 1 3.0638 1.5323 7.5348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460810248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = -26.342198 kcal Electronic energy + Delta-G solvation = -20740.235129 eV Core-core repulsion = 17553.767255 eV Total energy + Delta-G solvation = -3186.467874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.97442 -40.69823 -38.16889 -35.71239 -34.95360 -34.64307 -32.79265 -31.24475 -27.65847 -27.55133 -27.16351 -25.65065 -25.52654 -23.03719 -21.25966 -20.56846 -18.56066 -18.54000 -18.39134 -17.64171 -16.71651 -16.56825 -16.44229 -15.68100 -15.41730 -15.01057 -14.76665 -14.55789 -14.45514 -14.40659 -13.92093 -13.90881 -13.25770 -13.16712 -13.05059 -12.67323 -12.59681 -12.24662 -12.13465 -12.08731 -11.80607 -11.79480 -11.47083 -11.25758 -10.85464 -10.67776 -10.39511 -10.29286 -10.17537 -9.88392 -8.02406 -6.18035 -0.07679 0.11850 1.42090 1.45383 1.53139 1.76654 2.35716 2.51580 2.83329 3.21339 3.28776 3.31828 3.67722 3.70069 3.87184 4.01689 4.27431 4.36058 4.47373 4.54349 4.58985 4.70215 4.74184 4.81587 5.03033 5.07153 5.12147 5.14668 5.18073 5.21096 5.39911 5.47429 5.63939 5.67638 5.68419 5.99882 6.16818 6.23343 6.44303 6.73500 6.86934 7.11449 7.39267 7.49923 8.96271 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045221 B = 0.002848 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.032035 B = 9830.651206 C = 9981.195594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.714 5.714 14 C 0.503 3.497 15 O -0.593 6.593 16 C -0.125 4.125 17 C -0.048 4.048 18 C -0.178 4.178 19 C 0.145 3.855 20 N -0.538 5.538 21 C 0.277 3.723 22 N -0.538 5.538 23 C 0.145 3.855 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.409 0.591 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.186 0.814 39 H 0.217 0.783 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 2.963 19.037 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.365 5.365 14 C 0.291 3.709 15 O -0.474 6.474 16 C -0.165 4.165 17 C -0.087 4.087 18 C -0.182 4.182 19 C -0.021 4.021 20 N -0.251 5.251 21 C -0.011 4.011 22 N -0.251 5.251 23 C -0.021 4.021 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.246 0.754 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.203 0.797 39 H 0.233 0.767 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.032 2.873 19.780 20.091 hybrid contribution 0.457 -0.664 -2.021 2.176 sum -1.574 2.208 17.759 17.965 Atomic orbital electron populations 1.21675 0.97144 0.98652 1.00448 1.18350 0.93216 0.93012 0.90397 1.21675 0.97909 0.97881 1.00446 1.21305 1.31651 1.12134 0.91693 0.93805 1.25442 0.95185 0.95581 1.00953 1.69902 1.37072 1.23254 1.23573 0.85787 0.78668 0.78514 0.80011 1.20522 1.20874 1.20093 1.21218 0.96910 0.95029 0.84482 1.46194 1.52800 1.32001 1.05509 1.21338 0.79664 0.84283 0.85615 1.90669 1.40454 1.28713 1.87564 1.21660 1.03884 1.01101 0.89810 1.20090 1.01865 0.98665 0.88068 1.21647 0.97431 0.99308 0.99778 1.23598 0.92798 0.96120 0.89552 1.68502 1.35571 1.09140 1.11936 1.25473 0.86514 0.90532 0.98538 1.68504 1.15279 1.29429 1.11937 1.23595 0.99426 0.89503 0.89548 0.94203 0.92067 0.96348 0.96340 0.92056 0.94214 0.93060 0.94495 0.94479 0.75397 0.86743 0.86741 0.89880 0.89868 0.79676 0.76693 0.79678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.62 16 4 C -0.53 -27.56 8.01 25.60 0.21 -27.36 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.46 5.15 84.66 0.44 1.90 16 7 N -0.90 -47.38 9.35 21.45 0.20 -47.18 16 8 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.15 5.99 4.50 86.38 0.39 6.38 16 13 N -0.71 -22.14 4.96 -463.06 -2.30 -24.43 16 14 C 0.50 14.37 7.83 87.66 0.69 15.05 16 15 O -0.59 -21.97 15.98 -3.04 -0.05 -22.02 16 16 C -0.12 -2.13 5.68 29.84 0.17 -1.96 16 17 C -0.05 -0.78 4.68 29.85 0.14 -0.64 16 18 C -0.18 -2.67 5.17 -19.69 -0.10 -2.77 16 19 C 0.14 2.27 11.01 84.70 0.93 3.20 16 20 N -0.54 -9.85 10.44 -200.05 -2.09 -11.94 16 21 C 0.28 4.63 12.29 180.88 2.22 6.85 16 22 N -0.54 -9.85 10.44 -200.05 -2.09 -11.94 16 23 C 0.14 2.27 11.01 84.70 0.93 3.20 16 24 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 25 H 0.06 2.96 6.07 -2.39 -0.01 2.94 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 29 H 0.04 1.39 6.86 -2.38 -0.02 1.38 16 30 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 31 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 10.83 6.16 -92.71 -0.57 10.26 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 37 H 0.08 1.45 8.06 -2.39 -0.02 1.44 16 38 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.22 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -64.20 331.24 3.32 -60.87 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.47 Total: 15.61 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 7.15 Total: -3.14 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -6.27 Total: -95.50 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.05 Total: -22.02 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -64.20 3.32 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460810248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.530 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds