Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 N 1.46490 * 109.47493 * 120.00656 * 2 1 3 5 5 C 1.46507 * 119.99860 * 305.50248 * 4 2 1 6 6 C 1.50694 * 109.47087 * 269.99861 * 5 4 2 7 7 H 1.08005 * 120.00176 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99859 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00331 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46912 * 59.99865 * 10 8 6 12 12 H 1.48498 * 109.47476 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47343 * 299.99931 * 10 8 6 14 14 C 1.34781 * 120.00494 * 125.50531 * 4 2 1 15 15 O 1.21603 * 120.00465 * 185.06877 * 14 4 2 16 16 C 1.47431 * 119.99696 * 5.06139 * 14 4 2 17 17 C 1.41710 * 126.49693 * 44.27931 * 16 14 4 18 18 N 1.30289 * 108.00951 * 179.97438 * 17 16 14 19 19 N 1.40513 * 109.01600 * 359.94208 * 18 17 16 20 20 C 1.34220 * 108.28102 * 0.22840 * 19 18 17 21 21 C 1.51393 * 110.36716 * 179.69496 * 20 19 18 22 22 C 1.54568 * 104.14972 * 343.54189 * 21 20 19 23 23 C 1.47255 * 140.81267 * 180.28582 * 19 18 17 24 24 H 1.08998 * 109.46514 * 299.99714 * 1 2 3 25 25 H 1.09002 * 109.47471 * 59.99353 * 1 2 3 26 26 H 1.08996 * 109.47353 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46963 * 240.00551 * 2 1 3 28 28 H 1.09007 * 109.46953 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47289 * 300.00388 * 3 2 1 30 30 H 1.09000 * 109.46749 * 60.00420 * 3 2 1 31 31 H 1.08996 * 109.46731 * 30.00450 * 5 4 2 32 32 H 1.09001 * 109.46813 * 149.99686 * 5 4 2 33 33 H 0.97001 * 120.00653 * 180.02562 * 9 8 6 34 34 H 1.08000 * 126.00644 * 359.92315 * 17 16 14 35 35 H 1.08999 * 110.49634 * 224.86945 * 21 20 19 36 36 H 1.09011 * 110.49237 * 102.20645 * 21 20 19 37 37 H 1.09004 * 110.98679 * 266.94279 * 22 21 20 38 38 H 1.08992 * 111.02523 * 143.13441 * 22 21 20 39 39 H 1.09001 * 110.22582 * 78.02715 * 23 19 18 40 40 H 1.08999 * 110.23109 * 316.15621 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5679 -0.2644 2.5233 6 6 2.5039 0.7890 3.0571 7 1 3.3501 1.1088 2.4669 8 6 2.2808 1.3439 4.2994 9 7 1.2508 0.9542 5.0183 10 14 3.4407 2.6503 4.9608 11 1 3.4471 3.8174 4.0425 12 1 2.9842 3.0823 6.3063 13 1 4.8125 2.0904 5.0593 14 6 2.8822 -1.7183 1.0754 15 8 3.2161 -2.3506 2.0589 16 6 3.4221 -2.0757 -0.2491 17 6 3.9087 -1.1776 -1.2314 18 7 4.2972 -1.8771 -2.2596 19 7 4.0840 -3.2402 -1.9930 20 6 3.5469 -3.3506 -0.7680 21 6 3.2901 -4.8048 -0.4344 22 6 3.3600 -5.5240 -1.8008 23 6 4.2572 -4.5649 -2.6122 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.5612 0.1470 2.4505 32 1 1.5624 -1.1209 3.1975 33 1 1.0936 1.3449 5.8922 34 1 3.9496 -0.1020 -1.1436 35 1 2.3023 -4.9256 0.0104 36 1 4.0608 -5.1844 0.2366 37 1 2.3702 -5.6063 -2.2498 38 1 3.8250 -6.5049 -1.7031 39 1 5.2993 -4.8780 -2.5471 40 1 3.9364 -4.5391 -3.6536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464572927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = 53.313168 kcal Electronic energy + Delta-G solvation = -22222.766504 eV Core-core repulsion = 19039.752746 eV Total energy + Delta-G solvation = -3183.013758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66571 -38.73265 -36.29589 -35.75028 -32.77041 -30.96006 -30.68323 -29.41405 -28.02443 -26.76470 -26.33644 -23.08569 -22.37165 -21.76025 -20.65737 -19.98794 -18.06549 -16.81645 -16.62350 -16.33532 -15.13100 -14.66370 -14.48877 -14.33680 -14.21290 -13.78133 -13.47436 -13.29523 -13.26884 -12.92522 -12.38164 -12.18143 -11.97940 -11.80362 -11.65903 -11.44601 -11.38595 -11.13984 -10.89111 -10.75318 -10.68408 -10.50203 -10.27784 -9.93746 -9.47189 -9.19128 -8.89470 -8.35794 -8.25491 -7.50370 -5.96229 -3.99293 1.80765 2.24216 2.55397 3.36714 3.41067 3.44597 3.85058 3.90601 4.11060 4.35923 4.46086 4.52016 4.63154 4.95255 5.19670 5.22102 5.32968 5.37040 5.41666 5.48271 5.63960 5.67805 5.71756 5.73024 5.81199 5.96811 6.11063 6.27974 6.35996 6.44077 6.62032 6.70014 6.77931 7.03351 7.25574 7.57850 7.69875 7.78193 8.01848 8.34125 8.59546 9.00271 9.25892 9.64896 11.11705 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.005082 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.676870 B = 5508.528896 C = 5725.373409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.586 5.586 5 C 0.245 3.755 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.583 3.417 15 O -0.546 6.546 16 C -0.255 4.255 17 C 0.083 3.917 18 N -0.281 5.281 19 N -0.392 5.392 20 C 0.111 3.889 21 C -0.068 4.068 22 C -0.132 4.132 23 C 0.130 3.870 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.195 0.805 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -9.678 -16.221 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.219 4.219 4 N -0.317 5.317 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.369 3.631 15 O -0.424 6.424 16 C -0.270 4.270 17 C -0.104 4.104 18 N -0.100 5.100 19 N -0.173 5.173 20 C -0.020 4.020 21 C -0.107 4.107 22 C -0.171 4.171 23 C 0.009 3.991 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.212 0.788 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.811 -9.942 -16.912 19.701 hybrid contribution 0.369 0.974 1.187 1.579 sum 2.180 -8.968 -15.725 18.233 Atomic orbital electron populations 1.22126 0.95632 1.01677 1.02333 1.21075 0.94124 0.93691 0.88501 1.22223 1.01010 0.96180 1.02513 1.48148 1.43711 1.31189 1.08656 1.19260 0.95096 0.95801 0.77220 1.21435 1.11339 1.20995 1.01977 0.92368 1.24911 0.95475 0.97141 0.96563 1.69921 1.28346 1.43165 1.12119 0.86629 0.81404 0.81800 0.77999 1.20287 1.21322 1.20284 1.17223 0.79078 0.80512 0.86280 1.90726 1.59946 1.52741 1.38998 1.19905 1.17071 0.90705 0.99325 1.24295 0.96330 1.00140 0.89596 1.77129 1.25468 0.83804 1.23609 1.50000 1.48134 1.05038 1.14166 1.22395 0.95878 0.95775 0.87959 1.20933 1.05104 0.87144 0.97509 1.22836 1.00883 0.98595 0.94750 1.22341 1.01562 0.76706 0.98489 0.91142 0.92470 0.93061 0.90317 0.92947 0.93201 0.89891 0.94630 0.93972 0.92818 0.78800 0.88288 0.88013 0.89396 0.87949 0.89350 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.06 37.16 0.34 -2.19 16 2 C 0.13 2.28 2.59 -67.93 -0.18 2.10 16 3 C -0.16 -2.70 8.31 37.16 0.31 -2.39 16 4 N -0.59 -12.82 2.39 -168.73 -0.40 -13.22 16 5 C 0.25 6.41 4.78 -5.19 -0.02 6.39 16 6 C -0.52 -14.50 7.86 -34.44 -0.27 -14.77 16 7 H 0.06 1.62 7.59 -52.48 -0.40 1.22 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.58 13.10 7.55 -12.51 -0.09 13.01 16 15 O -0.55 -14.44 16.65 5.28 0.09 -14.35 16 16 C -0.26 -4.70 5.06 -104.84 -0.53 -5.23 16 17 C 0.08 1.37 9.68 -16.88 -0.16 1.21 16 18 N -0.28 -4.52 12.64 30.93 0.39 -4.13 16 19 N -0.39 -5.50 4.81 -55.09 -0.27 -5.77 16 20 C 0.11 1.72 7.50 -81.22 -0.61 1.11 16 21 C -0.07 -0.75 6.86 -26.72 -0.18 -0.94 16 22 C -0.13 -0.89 7.18 -25.19 -0.18 -1.07 16 23 C 0.13 1.11 7.77 -2.91 -0.02 1.09 16 24 H 0.07 1.24 6.51 -51.93 -0.34 0.90 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.27 4.79 -51.93 -0.25 1.02 16 28 H 0.05 0.88 7.15 -51.93 -0.37 0.50 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 31 H 0.04 0.93 6.15 -51.93 -0.32 0.61 16 32 H 0.04 1.26 7.36 -51.93 -0.38 0.87 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.20 2.87 6.36 -52.49 -0.33 2.54 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -35.06 324.73 -6.98 -42.04 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.69 Total: -0.47 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.71 Total: -0.07 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.46 Total: -48.97 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.06 -6.98 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464572927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.352 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds