Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 N 1.46490 * 109.47493 * 120.00656 * 2 1 3 5 5 C 1.46507 * 119.99860 * 305.50248 * 4 2 1 6 6 C 1.50694 * 109.47087 * 269.99861 * 5 4 2 7 7 H 1.08005 * 120.00176 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99859 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00331 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46912 * 59.99865 * 10 8 6 12 12 H 1.48498 * 109.47476 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47343 * 299.99931 * 10 8 6 14 14 C 1.34781 * 120.00494 * 125.50531 * 4 2 1 15 15 O 1.21603 * 120.00465 * 185.06877 * 14 4 2 16 16 C 1.47431 * 119.99696 * 5.06139 * 14 4 2 17 17 C 1.41710 * 126.49693 * 44.27931 * 16 14 4 18 18 N 1.30289 * 108.00951 * 179.97438 * 17 16 14 19 19 N 1.40513 * 109.01600 * 359.94208 * 18 17 16 20 20 C 1.34220 * 108.28102 * 0.22840 * 19 18 17 21 21 C 1.51393 * 110.36716 * 179.69496 * 20 19 18 22 22 C 1.54568 * 104.14972 * 343.54189 * 21 20 19 23 23 C 1.47255 * 140.81267 * 180.28582 * 19 18 17 24 24 H 1.08998 * 109.46514 * 299.99714 * 1 2 3 25 25 H 1.09002 * 109.47471 * 59.99353 * 1 2 3 26 26 H 1.08996 * 109.47353 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46963 * 240.00551 * 2 1 3 28 28 H 1.09007 * 109.46953 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47289 * 300.00388 * 3 2 1 30 30 H 1.09000 * 109.46749 * 60.00420 * 3 2 1 31 31 H 1.08996 * 109.46731 * 30.00450 * 5 4 2 32 32 H 1.09001 * 109.46813 * 149.99686 * 5 4 2 33 33 H 0.97001 * 120.00653 * 180.02562 * 9 8 6 34 34 H 1.08000 * 126.00644 * 359.92315 * 17 16 14 35 35 H 1.08999 * 110.49634 * 224.86945 * 21 20 19 36 36 H 1.09011 * 110.49237 * 102.20645 * 21 20 19 37 37 H 1.09004 * 110.98679 * 266.94279 * 22 21 20 38 38 H 1.08992 * 111.02523 * 143.13441 * 22 21 20 39 39 H 1.09001 * 110.22582 * 78.02715 * 23 19 18 40 40 H 1.08999 * 110.23109 * 316.15621 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5679 -0.2644 2.5233 6 6 2.5039 0.7890 3.0571 7 1 3.3501 1.1088 2.4669 8 6 2.2808 1.3439 4.2994 9 7 1.2508 0.9542 5.0183 10 14 3.4407 2.6503 4.9608 11 1 3.4471 3.8174 4.0425 12 1 2.9842 3.0823 6.3063 13 1 4.8125 2.0904 5.0593 14 6 2.8822 -1.7183 1.0754 15 8 3.2161 -2.3506 2.0589 16 6 3.4221 -2.0757 -0.2491 17 6 3.9087 -1.1776 -1.2314 18 7 4.2972 -1.8771 -2.2596 19 7 4.0840 -3.2402 -1.9930 20 6 3.5469 -3.3506 -0.7680 21 6 3.2901 -4.8048 -0.4344 22 6 3.3600 -5.5240 -1.8008 23 6 4.2572 -4.5649 -2.6122 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.5612 0.1470 2.4505 32 1 1.5624 -1.1209 3.1975 33 1 1.0936 1.3449 5.8922 34 1 3.9496 -0.1020 -1.1436 35 1 2.3023 -4.9256 0.0104 36 1 4.0608 -5.1844 0.2366 37 1 2.3702 -5.6063 -2.2498 38 1 3.8250 -6.5049 -1.7031 39 1 5.2993 -4.8780 -2.5471 40 1 3.9364 -4.5391 -3.6536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464572927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = 29.488027 kcal Electronic energy + Delta-G solvation = -22223.799639 eV Core-core repulsion = 19039.752746 eV Total energy + Delta-G solvation = -3184.046894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.82401 -40.40978 -37.54034 -37.18126 -34.89270 -32.39415 -32.14389 -30.41950 -29.62873 -28.19316 -27.72528 -25.03100 -23.49189 -22.97339 -21.92250 -21.25309 -19.51244 -18.54974 -18.29221 -17.53045 -16.92086 -16.29118 -15.77913 -15.74387 -15.63577 -14.96602 -14.73607 -14.59267 -14.36752 -14.15521 -14.09697 -13.72780 -13.33487 -13.23111 -12.99260 -12.85356 -12.70655 -12.49927 -12.48298 -12.21920 -12.12528 -12.04350 -11.92704 -11.64904 -11.47925 -10.67406 -10.56475 -10.27007 -9.63250 -9.30765 -8.15269 -6.27217 0.59961 1.17756 1.29129 1.38793 1.42591 1.49633 2.22114 2.35436 2.53922 3.09176 3.14155 3.48036 3.66503 3.90162 3.97087 4.03425 4.19726 4.31306 4.35652 4.47447 4.49912 4.57373 4.68214 4.82010 4.86788 4.88742 4.99902 5.01199 5.06899 5.09724 5.15413 5.27108 5.39555 5.43948 5.60083 5.68822 5.71678 5.95119 6.15947 6.59313 6.78513 6.87788 7.34896 7.54864 8.91777 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.005082 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.676870 B = 5508.528896 C = 5725.373409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 C -0.155 4.155 4 N -0.588 5.588 5 C 0.263 3.737 6 C -0.527 4.527 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.578 3.422 15 O -0.602 6.602 16 C -0.296 4.296 17 C 0.085 3.915 18 N -0.293 5.293 19 N -0.383 5.383 20 C 0.113 3.887 21 C -0.076 4.076 22 C -0.111 4.111 23 C 0.115 3.885 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.030 0.970 32 H -0.006 1.006 33 H 0.265 0.735 34 H 0.204 0.796 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -10.192 -19.060 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 C -0.213 4.213 4 N -0.318 5.318 5 C 0.142 3.858 6 C -0.566 4.566 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.206 1.206 14 C 0.367 3.633 15 O -0.484 6.484 16 C -0.311 4.311 17 C -0.101 4.101 18 N -0.112 5.112 19 N -0.164 5.164 20 C -0.021 4.021 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.003 4.003 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.012 0.988 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.530 -10.447 -19.830 22.555 hybrid contribution 0.140 1.014 1.993 2.241 sum 2.669 -9.433 -17.836 20.353 Atomic orbital electron populations 1.22090 0.94341 1.01859 1.02931 1.21398 0.95163 0.93908 0.87188 1.22157 1.00805 0.95525 1.02823 1.48154 1.43591 1.31545 1.08486 1.18724 0.94824 0.93386 0.78871 1.21641 1.11344 1.21252 1.02362 0.92722 1.25773 0.97062 0.99359 0.96808 1.70045 1.29980 1.44440 1.12513 0.85577 0.78685 0.79412 0.77795 1.18469 1.20539 1.20623 1.17841 0.78332 0.79671 0.87425 1.90671 1.61888 1.54607 1.41270 1.19621 1.20355 0.92958 0.98154 1.24365 0.96126 1.00580 0.89047 1.77048 1.25628 0.85098 1.23420 1.50504 1.46265 1.05729 1.13887 1.22977 0.94132 0.96749 0.88220 1.21185 1.04899 0.85036 1.00410 1.22909 1.01793 0.99143 0.91042 1.22942 1.03421 0.74184 0.99779 0.93590 0.88674 0.93136 0.88232 0.93280 0.89161 0.93134 0.95190 0.98809 0.92619 0.77924 0.88700 0.87763 0.87988 0.84222 0.87405 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.06 71.98 0.65 -4.16 16 2 C 0.13 4.38 2.59 44.99 0.12 4.50 16 3 C -0.16 -5.09 8.31 71.98 0.60 -4.50 16 4 N -0.59 -26.85 2.39 -806.00 -1.92 -28.77 16 5 C 0.26 14.59 4.78 85.63 0.41 15.00 16 6 C -0.53 -30.66 7.86 25.60 0.20 -30.46 16 7 H 0.05 3.15 7.59 -2.91 -0.02 3.12 16 8 C 0.01 0.49 5.46 84.65 0.46 0.96 16 9 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 10 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 14 C 0.58 27.21 7.55 86.66 0.65 27.87 16 15 O -0.60 -33.90 16.65 -4.04 -0.07 -33.96 16 16 C -0.30 -11.00 5.06 -20.01 -0.10 -11.10 16 17 C 0.09 2.75 9.68 85.78 0.83 3.58 16 18 N -0.29 -8.89 12.64 -56.07 -0.71 -9.60 16 19 N -0.38 -9.83 4.81 -328.20 -1.58 -11.41 16 20 C 0.11 3.39 7.50 42.41 0.32 3.71 16 21 C -0.08 -1.56 6.86 30.60 0.21 -1.35 16 22 C -0.11 -1.03 7.18 31.59 0.23 -0.80 16 23 C 0.11 1.50 7.77 86.70 0.67 2.18 16 24 H 0.05 1.65 6.51 -2.39 -0.02 1.64 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.10 3.10 4.79 -2.39 -0.01 3.08 16 28 H 0.05 1.62 7.15 -2.38 -0.02 1.60 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.99 6.93 -2.39 -0.02 1.98 16 31 H 0.03 1.68 6.15 -2.39 -0.01 1.67 16 32 H -0.01 -0.40 7.36 -2.39 -0.02 -0.42 16 33 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.20 5.86 6.36 -2.91 -0.02 5.84 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -81.25 324.73 4.33 -76.93 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.04 Total: 10.33 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.25 Total: 5.42 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -3.93 Total: -106.47 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.07 Total: -33.96 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.25 4.33 -76.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464572927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.415 kcal (2) G-P(sol) polarization free energy of solvation -81.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds