Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47169 * 2 1 4 4 H 1.08998 * 109.47049 * 304.99789 * 3 2 1 5 5 C 1.52997 * 109.47337 * 184.99426 * 3 2 1 6 6 N 1.46498 * 109.47611 * 184.99644 * 5 3 2 7 7 C 1.34776 * 120.00143 * 179.97438 * 6 5 3 8 8 O 1.21549 * 120.00201 * 0.02562 * 7 6 5 9 9 C 1.47846 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.40021 * 120.55367 * 179.97438 * 9 7 6 11 11 C 1.38361 * 118.28541 * 179.70393 * 10 9 7 12 12 C 1.38357 * 119.29972 * 0.27997 * 11 10 9 13 13 C 1.50700 * 119.45540 * 179.97438 * 12 11 10 14 14 N 1.31916 * 121.08079 * 0.02562 * 12 11 10 15 15 C 1.31690 * 121.88251 * 359.97438 * 14 12 11 16 16 N 1.46500 * 109.47235 * 64.99535 * 3 2 1 17 17 C 1.36932 * 120.00379 * 274.99890 * 16 3 2 18 18 H 1.08006 * 119.99887 * 359.97438 * 17 16 3 19 19 C 1.38813 * 120.00550 * 179.97438 * 17 16 3 20 20 N 1.31619 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00272 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46993 * 90.00025 * 21 19 17 23 23 H 1.48499 * 109.47083 * 210.00339 * 21 19 17 24 24 H 1.48500 * 109.47227 * 330.00155 * 21 19 17 25 25 H 1.08996 * 109.47183 * 299.99979 * 1 2 3 26 26 H 1.09002 * 109.46661 * 60.00723 * 1 2 3 27 27 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47161 * 239.99056 * 2 1 3 29 29 H 1.09007 * 109.46510 * 119.99997 * 2 1 3 30 30 H 1.09006 * 109.46892 * 64.99603 * 5 3 2 31 31 H 1.09003 * 109.47622 * 305.00349 * 5 3 2 32 32 H 0.96998 * 119.99815 * 0.02562 * 6 5 3 33 33 H 1.08002 * 120.86196 * 359.97438 * 10 9 7 34 34 H 1.08003 * 120.34925 * 180.25565 * 11 10 9 35 35 H 1.08999 * 109.47436 * 90.00128 * 13 12 11 36 36 H 1.09004 * 109.46824 * 210.00137 * 13 12 11 37 37 H 1.09008 * 109.47293 * 329.99511 * 13 12 11 38 38 H 1.08007 * 119.71871 * 180.02562 * 15 14 12 39 39 H 0.97005 * 120.00059 * 94.99986 * 16 3 2 40 40 H 0.96997 * 120.00359 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 3.5648 1.4443 -0.1256 6 7 4.0631 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0857 8 8 6.1653 2.1461 -0.2574 9 6 5.8886 4.4479 0.0357 10 6 7.2604 4.7167 -0.0449 11 6 7.6788 6.0307 0.0687 12 6 6.7380 7.0265 0.2622 13 6 7.1898 8.4587 0.3870 14 7 5.4521 6.7426 0.3404 15 6 5.0048 5.5082 0.2383 16 7 1.6524 2.0975 1.2517 17 6 0.4157 2.6735 1.3687 18 1 -0.2739 2.6453 0.5379 19 6 0.0481 3.2937 2.5549 20 7 0.8886 3.3286 3.5672 21 14 -1.6393 4.0789 2.7146 22 1 -2.6054 3.0756 3.2295 23 1 -1.5652 5.2240 3.6572 24 1 -2.0887 4.5614 1.3840 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.8500 1.0376 -1.0959 31 1 3.9955 0.8311 0.6661 32 1 3.4411 3.5482 0.1315 33 1 7.9733 3.9196 -0.1962 34 1 8.7287 6.2763 0.0073 35 1 7.2121 8.9200 -0.6004 36 1 6.4963 9.0040 1.0272 37 1 8.1878 8.4882 0.8245 38 1 3.9443 5.3156 0.3071 39 1 2.2719 2.1232 1.9978 40 1 0.6318 3.7616 4.3963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494939505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = -23.140045 kcal Electronic energy + Delta-G solvation = -21168.376455 eV Core-core repulsion = 17982.047436 eV Total energy + Delta-G solvation = -3186.329018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67599 -40.19686 -38.27077 -35.38712 -34.33179 -33.89933 -33.33910 -31.50758 -30.02841 -28.45393 -25.66370 -24.89659 -24.34784 -23.20151 -21.73112 -21.29832 -19.43565 -18.77523 -17.90989 -17.02968 -16.79168 -16.46271 -16.28204 -15.85352 -15.77411 -15.26417 -15.07979 -14.62489 -14.40422 -14.20206 -14.12315 -13.78899 -13.26194 -13.17638 -12.98846 -12.96732 -12.79819 -12.77880 -12.36360 -12.09887 -11.89262 -11.63751 -11.35069 -11.28248 -10.97727 -10.88822 -10.48806 -10.21894 -9.91000 -8.97693 -7.87413 -5.14525 -0.41571 0.18345 1.50378 1.51709 1.58568 1.76933 2.14816 2.60214 2.77869 3.18401 3.46872 3.69153 3.74768 3.81510 3.88773 3.94383 4.01071 4.31472 4.37965 4.48258 4.57058 4.61462 4.71421 4.73441 4.80964 4.87783 5.03424 5.08438 5.09838 5.12990 5.16719 5.21498 5.42535 5.56441 5.60994 5.62233 5.73396 6.32687 6.46982 6.84700 7.09668 7.40878 8.12296 8.37031 9.35468 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.004978 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.784520 B = 5622.875956 C = 7152.674009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.060 0.940 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.560 3.440 8 O -0.578 6.578 9 C -0.208 4.208 10 C -0.022 4.022 11 C -0.170 4.170 12 C 0.137 3.863 13 C -0.105 4.105 14 N -0.513 5.513 15 C 0.137 3.863 16 N -0.728 5.728 17 C -0.216 4.216 18 H 0.081 0.919 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.957 3.043 22 H -0.294 1.294 23 H -0.304 1.304 24 H -0.268 1.268 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.182 0.818 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.372 0.628 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 4.946 -9.909 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.078 0.922 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.348 3.652 8 O -0.460 6.460 9 C -0.213 4.213 10 C -0.048 4.048 11 C -0.190 4.190 12 C 0.000 4.000 13 C -0.162 4.162 14 N -0.223 5.223 15 C -0.021 4.021 16 N -0.369 5.369 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.788 3.212 22 H -0.222 1.222 23 H -0.231 1.231 24 H -0.193 1.193 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.247 0.753 33 H 0.172 0.828 34 H 0.199 0.801 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.174 0.826 39 H 0.204 0.796 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.977 5.036 -9.974 16.379 hybrid contribution -0.807 -0.225 0.868 1.207 sum 11.170 4.811 -9.105 15.193 Atomic orbital electron populations 1.21702 0.95954 1.00607 1.01810 1.21984 0.96651 0.97205 1.01132 1.20733 0.90753 0.93457 0.89550 0.92188 1.21654 0.94531 0.82265 1.01837 1.45918 1.06876 1.11080 1.71604 1.18301 0.82406 0.88346 0.76190 1.90703 1.56653 1.46611 1.52043 1.20941 0.96636 0.93758 1.09953 1.21936 0.93832 0.98380 0.90629 1.22336 1.03012 0.91514 1.02089 1.22272 0.88139 0.99042 0.90526 1.20910 1.02957 0.87981 1.04326 1.67599 1.18112 1.21664 1.14946 1.23033 1.00202 0.87388 0.91473 1.42590 1.15817 1.66135 1.12355 1.19501 0.92474 1.25329 0.97488 0.90101 1.25353 1.00855 1.03470 0.96666 1.69802 1.36768 1.51033 1.04306 0.85367 0.80986 0.77417 0.77391 1.22169 1.23089 1.19333 0.93306 0.93138 0.92856 0.90522 0.93576 0.89728 0.92753 0.75330 0.82820 0.80115 0.88487 0.90906 0.87624 0.82624 0.79603 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 3 C 0.16 5.76 2.59 44.99 0.12 5.88 16 4 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 5 C 0.12 3.98 5.23 86.38 0.45 4.43 16 6 N -0.70 -23.63 5.34 -465.97 -2.49 -26.12 16 7 C 0.56 19.19 7.78 86.79 0.68 19.87 16 8 O -0.58 -22.39 16.42 -3.87 -0.06 -22.45 16 9 C -0.21 -6.23 5.89 -19.99 -0.12 -6.34 16 10 C -0.02 -0.53 9.72 22.73 0.22 -0.31 16 11 C -0.17 -3.22 9.72 22.33 0.22 -3.00 16 12 C 0.14 3.02 6.78 42.57 0.29 3.31 16 13 C -0.10 -1.44 10.16 71.24 0.72 -0.71 16 14 N -0.51 -14.90 10.25 -182.82 -1.87 -16.78 16 15 C 0.14 4.17 10.71 85.02 0.91 5.08 16 16 N -0.73 -32.81 4.51 -322.96 -1.46 -34.26 16 17 C -0.22 -10.80 7.75 84.03 0.65 -10.15 16 18 H 0.08 3.88 7.33 -2.91 -0.02 3.86 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.97 -56.98 13.06 21.65 0.28 -56.69 16 21 Si 0.96 44.60 29.55 68.60 2.03 46.62 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H 0.05 1.98 5.99 -2.39 -0.01 1.97 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.41 13.94 6.20 -92.71 -0.58 13.36 16 33 H 0.15 3.45 7.74 -2.91 -0.02 3.42 16 34 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.11 0.84 8.07 -2.38 -0.02 0.83 16 38 H 0.16 4.78 6.42 -2.91 -0.02 4.76 16 39 H 0.37 18.78 7.80 -92.70 -0.72 18.06 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -65.80 336.23 1.62 -64.17 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.24 Total: 38.92 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.44 Total: 6.59 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -5.54 Total: -133.85 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -65.80 1.62 -64.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494939505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.034 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds