Wall clock time and date at job start Mon Mar 30 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09008 * 109.46793 * 54.99972 * 3 2 1 5 5 C 1.53000 * 109.46776 * 174.99584 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21553 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.00003 * 180.02562 * 7 6 5 10 10 C 1.40015 * 120.55843 * 179.97438 * 9 7 6 11 11 C 1.38361 * 118.28674 * 179.97438 * 10 9 7 12 12 C 1.38341 * 119.30490 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.46260 * 179.97438 * 12 11 10 14 14 N 1.31929 * 121.08003 * 0.02562 * 12 11 10 15 15 C 1.31695 * 121.87776 * 359.65586 * 14 12 11 16 16 N 1.46496 * 109.47348 * 294.99912 * 3 2 1 17 17 C 1.36941 * 120.00198 * 84.99697 * 16 3 2 18 18 H 1.07996 * 119.99379 * 0.02562 * 17 16 3 19 19 C 1.38810 * 119.99828 * 180.02562 * 17 16 3 20 20 N 1.31617 * 120.00148 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99611 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47407 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47025 * 120.00299 * 21 19 17 24 24 H 1.48504 * 109.47341 * 239.99944 * 21 19 17 25 25 H 1.08999 * 109.47547 * 300.00062 * 1 2 3 26 26 H 1.09005 * 109.47093 * 60.00026 * 1 2 3 27 27 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47094 * 239.99657 * 2 1 3 29 29 H 1.09004 * 109.46831 * 119.99499 * 2 1 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 31 31 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 32 32 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.86173 * 0.03450 * 10 9 7 34 34 H 1.08007 * 120.34787 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47095 * 89.99764 * 13 12 11 36 36 H 1.09008 * 109.46824 * 209.99931 * 13 12 11 37 37 H 1.08999 * 109.46609 * 329.99732 * 13 12 11 38 38 H 1.08003 * 119.71623 * 180.31923 * 15 14 12 39 39 H 0.97002 * 119.99429 * 265.00252 * 16 3 2 40 40 H 0.97004 * 120.00027 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0860 8 8 6.1652 2.1461 0.2570 9 6 5.8885 4.4480 -0.0344 10 6 7.2601 4.7171 0.0474 11 6 7.6789 6.0304 -0.0720 12 6 6.7383 7.0261 -0.2660 13 6 7.1905 8.4578 -0.3960 14 7 5.4518 6.7429 -0.3381 15 6 5.0046 5.5084 -0.2365 16 7 1.6524 2.0975 -1.2518 17 6 0.4156 2.6735 -1.3688 18 1 -0.2740 2.6452 -0.5382 19 6 0.0482 3.2936 -2.5551 20 7 0.8885 3.3276 -3.5676 21 14 -1.6387 4.0799 -2.7145 22 1 -2.3876 3.9068 -1.4440 23 1 -1.4844 5.5282 -3.0042 24 1 -2.3849 3.4304 -3.8220 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8498 1.0377 1.0962 31 1 3.9954 0.8311 -0.6658 32 1 3.4410 3.5484 -0.1308 33 1 7.9730 3.9200 0.1989 34 1 8.7291 6.2757 -0.0135 35 1 7.3835 8.6841 -1.4446 36 1 6.4115 9.1205 -0.0186 37 1 8.1033 8.6043 0.1814 38 1 3.9441 5.3157 -0.3057 39 1 2.2720 2.1231 -1.9977 40 1 0.6317 3.7607 -4.3967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494939506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:01 Heat of formation + Delta-G solvation = -23.274090 kcal Electronic energy + Delta-G solvation = -21168.643021 eV Core-core repulsion = 17982.308190 eV Total energy + Delta-G solvation = -3186.334831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67615 -40.19666 -38.27134 -35.38802 -34.33310 -33.89981 -33.33976 -31.50868 -30.02905 -28.45475 -25.66766 -24.89704 -24.34866 -23.20194 -21.73184 -21.29863 -19.43733 -18.77699 -17.91030 -17.03265 -16.79176 -16.46373 -16.28414 -15.84703 -15.77294 -15.27307 -15.08183 -14.62383 -14.40853 -14.19485 -14.12614 -13.79370 -13.25983 -13.18238 -12.98507 -12.98079 -12.81086 -12.78040 -12.36266 -12.07482 -11.87509 -11.63922 -11.35311 -11.28252 -10.97833 -10.90154 -10.48887 -10.21983 -9.91140 -8.97826 -7.87815 -5.14859 -0.41641 0.18242 1.49304 1.51691 1.59182 1.76838 2.14777 2.59927 2.77799 3.18335 3.46744 3.69086 3.74714 3.81438 3.88690 3.94328 4.01042 4.31416 4.37923 4.48260 4.57098 4.61385 4.71516 4.73468 4.80715 4.87780 5.03381 5.08407 5.09847 5.13026 5.16536 5.21538 5.42549 5.56467 5.60909 5.62459 5.73480 6.32551 6.46895 6.84569 7.09610 7.40687 8.12056 8.36731 9.35302 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.004979 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.243561 B = 5621.802522 C = 7152.179859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.060 0.940 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.560 3.440 8 O -0.578 6.578 9 C -0.208 4.208 10 C -0.022 4.022 11 C -0.170 4.170 12 C 0.137 3.863 13 C -0.105 4.105 14 N -0.513 5.513 15 C 0.137 3.863 16 N -0.728 5.728 17 C -0.215 4.215 18 H 0.082 0.918 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.957 3.043 22 H -0.265 1.265 23 H -0.300 1.300 24 H -0.302 1.302 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.182 0.818 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.157 0.843 39 H 0.372 0.628 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.234 4.878 9.884 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.078 0.922 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.348 3.652 8 O -0.460 6.460 9 C -0.213 4.213 10 C -0.048 4.048 11 C -0.189 4.189 12 C 0.000 4.000 13 C -0.162 4.162 14 N -0.223 5.223 15 C -0.021 4.021 16 N -0.369 5.369 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.788 3.212 22 H -0.189 1.189 23 H -0.228 1.228 24 H -0.230 1.230 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.172 0.828 34 H 0.199 0.801 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.174 0.826 39 H 0.204 0.796 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.966 4.957 9.961 16.340 hybrid contribution -0.794 -0.203 -0.898 1.216 sum 11.172 4.754 9.063 15.151 Atomic orbital electron populations 1.21701 0.95951 1.00609 1.01810 1.21983 0.96650 0.97198 1.01137 1.20738 0.90754 0.93465 0.89545 0.92180 1.21656 0.94530 0.82262 1.01839 1.45919 1.06872 1.11077 1.71611 1.18302 0.82409 0.88347 0.76185 1.90704 1.56651 1.46607 1.52045 1.20939 0.96642 0.93744 1.09954 1.21935 0.93833 0.98364 0.90637 1.22333 1.02984 0.91537 1.02091 1.22272 0.88138 0.99048 0.90535 1.20911 1.02958 0.87925 1.04382 1.67608 1.18123 1.21692 1.14903 1.23034 1.00204 0.87377 0.91491 1.42599 1.15829 1.66118 1.12360 1.19541 0.92458 1.25193 0.97460 0.90060 1.25349 1.00864 1.03493 0.96668 1.69811 1.36771 1.51048 1.04308 0.85303 0.81048 0.77383 0.77456 1.18932 1.22752 1.23001 0.93171 0.93290 0.92842 0.93562 0.90524 0.89723 0.92749 0.75332 0.82813 0.80110 0.88971 0.90646 0.87408 0.82628 0.79604 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.13 5.61 30.59 0.17 -3.96 16 3 C 0.16 5.75 2.59 44.99 0.12 5.87 16 4 H 0.06 2.08 8.08 -2.38 -0.02 2.06 16 5 C 0.12 3.97 5.23 86.38 0.45 4.43 16 6 N -0.70 -23.61 5.34 -465.97 -2.49 -26.10 16 7 C 0.56 19.18 7.78 86.79 0.68 19.86 16 8 O -0.58 -22.38 16.42 -3.88 -0.06 -22.44 16 9 C -0.21 -6.22 5.89 -19.99 -0.12 -6.34 16 10 C -0.02 -0.53 9.72 22.73 0.22 -0.30 16 11 C -0.17 -3.22 9.72 22.32 0.22 -3.00 16 12 C 0.14 3.02 6.78 42.57 0.29 3.31 16 13 C -0.10 -1.44 10.16 71.24 0.72 -0.72 16 14 N -0.51 -14.92 10.25 -182.82 -1.87 -16.79 16 15 C 0.14 4.17 10.71 85.02 0.91 5.08 16 16 N -0.73 -32.78 4.51 -322.94 -1.46 -34.23 16 17 C -0.21 -10.72 7.75 84.03 0.65 -10.07 16 18 H 0.08 3.90 7.32 -2.91 -0.02 3.88 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 20 N -0.97 -56.99 13.06 21.65 0.28 -56.71 16 21 Si 0.96 44.61 29.55 68.60 2.03 46.64 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.99 5.99 -2.38 -0.01 1.97 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.41 13.93 6.20 -92.71 -0.58 13.35 16 33 H 0.15 3.45 7.74 -2.91 -0.02 3.42 16 34 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.11 0.80 8.07 -2.39 -0.02 0.79 16 38 H 0.16 4.78 6.42 -2.91 -0.02 4.76 16 39 H 0.37 18.77 7.80 -92.71 -0.72 18.04 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -65.85 336.23 1.62 -64.23 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.24 Total: 38.77 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.44 Total: 6.64 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -5.54 Total: -133.84 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.85 1.62 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494939506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.953 kcal (2) G-P(sol) polarization free energy of solvation -65.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds