Wall clock time and date at job start Mon Mar 30 2020 02:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46662 * 2 1 4 4 H 1.09001 * 109.47230 * 55.00500 * 3 2 1 5 5 C 1.53004 * 109.46819 * 174.99888 * 3 2 1 6 6 N 1.46496 * 109.47135 * 174.99960 * 5 3 2 7 7 C 1.34779 * 119.99935 * 180.02562 * 6 5 3 8 8 O 1.21516 * 120.00227 * 0.02562 * 7 6 5 9 9 C 1.48151 * 119.99840 * 180.02562 * 7 6 5 10 10 C 1.39830 * 120.92601 * 0.02562 * 9 7 6 11 11 C 1.38123 * 119.00782 * 180.02562 * 10 9 7 12 12 N 1.31834 * 120.89583 * 359.97438 * 11 10 9 13 13 C 1.31800 * 122.04701 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.54958 * 179.97438 * 13 12 11 15 15 C 1.38168 * 120.89387 * 359.97438 * 13 12 11 16 16 N 1.46504 * 109.47498 * 294.99883 * 3 2 1 17 17 C 1.36937 * 119.99568 * 85.00166 * 16 3 2 18 18 H 1.07993 * 120.00260 * 0.02562 * 17 16 3 19 19 C 1.38809 * 119.99575 * 179.97438 * 17 16 3 20 20 N 1.31621 * 120.00263 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99963 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47262 * 90.00005 * 21 19 17 23 23 H 1.48507 * 109.46736 * 209.99625 * 21 19 17 24 24 H 1.48491 * 109.47472 * 329.99608 * 21 19 17 25 25 H 1.09001 * 109.47333 * 60.00138 * 1 2 3 26 26 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47602 * 299.99769 * 1 2 3 28 28 H 1.09001 * 109.47090 * 240.00174 * 2 1 3 29 29 H 1.08998 * 109.46840 * 119.99952 * 2 1 3 30 30 H 1.08997 * 109.46794 * 55.00207 * 5 3 2 31 31 H 1.08998 * 109.47339 * 295.00424 * 5 3 2 32 32 H 0.96999 * 120.00482 * 0.02562 * 6 5 3 33 33 H 1.08004 * 120.49788 * 0.04428 * 10 9 7 34 34 H 1.08005 * 119.55485 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.46935 * 89.99945 * 14 13 12 36 36 H 1.09000 * 109.46618 * 209.99174 * 14 13 12 37 37 H 1.08994 * 109.47240 * 329.99765 * 14 13 12 38 38 H 1.08002 * 120.50091 * 180.02562 * 15 13 12 39 39 H 0.96991 * 119.99866 * 265.00301 * 16 3 2 40 40 H 0.96996 * 120.00241 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1258 6 7 4.0629 2.8168 0.0060 7 6 5.3856 3.0630 0.0859 8 8 6.1650 2.1465 0.2568 9 6 5.8894 4.4510 -0.0347 10 6 5.0098 5.5202 -0.2311 11 6 5.5226 6.7982 -0.3386 12 7 6.8203 7.0159 -0.2580 13 6 7.6835 6.0372 -0.0735 14 6 9.1553 6.3501 0.0097 15 6 7.2573 4.7282 0.0447 16 7 1.6523 2.0976 -1.2518 17 6 0.4155 2.6735 -1.3687 18 1 -0.2741 2.6452 -0.5381 19 6 0.0485 3.2946 -2.5546 20 7 -1.1402 3.8487 -2.6670 21 14 1.2415 3.3441 -3.9912 22 1 1.0380 2.1464 -4.8452 23 1 1.0001 4.5706 -4.7930 24 1 2.6347 3.3548 -3.4775 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9953 0.8312 -0.6659 31 1 3.8498 1.0377 1.0960 32 1 3.4409 3.5484 -0.1308 33 1 3.9455 5.3493 -0.2974 34 1 4.8512 7.6306 -0.4900 35 1 9.4274 6.5444 1.0472 36 1 9.7287 5.5016 -0.3635 37 1 9.3743 7.2306 -0.5944 38 1 7.9702 3.9312 0.1962 39 1 2.2718 2.1232 -1.9977 40 1 -1.3967 4.2824 -3.4958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495076247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:33 Heat of formation + Delta-G solvation = -19.332373 kcal Electronic energy + Delta-G solvation = -21265.923112 eV Core-core repulsion = 18079.759206 eV Total energy + Delta-G solvation = -3186.163905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72349 -40.29348 -38.42957 -35.50771 -34.42123 -33.85897 -33.42094 -32.08599 -29.75760 -28.59591 -26.16960 -24.87073 -23.90613 -23.55268 -21.80973 -21.22720 -19.74431 -18.78570 -17.82800 -17.14906 -16.74279 -16.59591 -16.30060 -16.12757 -15.79753 -15.33389 -15.03927 -14.73093 -14.68221 -14.48938 -14.16314 -14.10906 -13.33713 -13.12971 -13.10015 -12.92432 -12.89419 -12.72134 -12.33206 -12.13071 -11.92157 -11.61415 -11.46254 -11.39757 -11.01950 -10.95896 -10.57926 -10.17280 -10.02026 -9.30670 -7.95819 -5.28138 -0.40372 0.01524 1.38057 1.41017 1.47107 1.73965 2.00144 2.50695 2.74517 3.28978 3.35665 3.44453 3.58450 3.69181 3.84320 3.90606 3.99299 4.29362 4.38763 4.43458 4.54125 4.55056 4.67046 4.72064 4.78436 4.80744 4.91835 5.01119 5.05970 5.08395 5.15951 5.19257 5.35330 5.51155 5.59423 5.72889 5.87316 6.26648 6.37439 6.85441 6.98855 7.12608 7.86896 8.05254 9.25094 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.005080 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.029403 B = 5510.927058 C = 6629.529400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.118 3.882 6 N -0.705 5.705 7 C 0.554 3.446 8 O -0.569 6.569 9 C -0.097 4.097 10 C -0.150 4.150 11 C 0.100 3.900 12 N -0.487 5.487 13 C 0.116 3.884 14 C -0.101 4.101 15 C -0.123 4.123 16 N -0.747 5.747 17 C -0.206 4.206 18 H 0.071 0.929 19 C -0.055 4.055 20 N -0.981 5.981 21 Si 0.937 3.063 22 H -0.291 1.291 23 H -0.302 1.302 24 H -0.255 1.255 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.412 0.588 33 H 0.150 0.850 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.362 0.638 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.713 1.361 7.120 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.060 3.940 4 H 0.080 0.920 5 C -0.006 4.006 6 N -0.356 5.356 7 C 0.341 3.659 8 O -0.449 6.449 9 C -0.108 4.108 10 C -0.170 4.170 11 C -0.056 4.056 12 N -0.198 5.198 13 C -0.021 4.021 14 C -0.158 4.158 15 C -0.144 4.144 16 N -0.391 5.391 17 C -0.337 4.337 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.632 5.632 21 Si 0.767 3.233 22 H -0.218 1.218 23 H -0.230 1.230 24 H -0.180 1.180 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.168 0.832 34 H 0.205 0.795 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.169 0.831 39 H 0.195 0.805 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.338 1.599 7.244 18.858 hybrid contribution -0.753 -0.443 -1.295 1.563 sum 16.585 1.155 5.949 17.657 Atomic orbital electron populations 1.21696 0.96338 1.00460 1.01642 1.21962 0.96144 0.96874 1.01838 1.20713 0.90911 0.93539 0.88856 0.91979 1.21740 0.94037 0.82183 1.02678 1.45949 1.06822 1.11320 1.71528 1.18420 0.82541 0.88343 0.76570 1.90724 1.56661 1.46423 1.51101 1.20425 0.95405 0.93112 1.01891 1.22577 1.01565 0.93569 0.99291 1.23175 0.91645 0.96579 0.94242 1.67503 1.03993 1.36691 1.11626 1.21820 0.98213 0.88030 0.94048 1.20825 0.86577 1.04044 1.04364 1.22237 0.94889 0.98670 0.98616 1.42836 1.15325 1.67704 1.13209 1.18962 0.91200 1.25109 0.98401 0.91131 1.25234 0.97754 1.01525 1.00128 1.69839 1.21577 1.44565 1.27213 0.85692 0.80363 0.76376 0.80899 1.21797 1.22971 1.17975 0.93522 0.92803 0.93837 0.92590 0.90127 0.91732 0.89295 0.75053 0.83201 0.79537 0.88844 0.88920 0.89940 0.83057 0.80463 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.18 71.98 0.66 -4.15 16 2 C -0.13 -3.75 5.61 30.59 0.17 -3.58 16 3 C 0.17 5.35 2.59 44.99 0.12 5.47 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 3.33 5.23 86.38 0.45 3.78 16 6 N -0.71 -20.47 5.35 -465.68 -2.49 -22.96 16 7 C 0.55 16.87 7.80 86.88 0.68 17.55 16 8 O -0.57 -20.04 16.45 -3.77 -0.06 -20.10 16 9 C -0.10 -2.61 5.91 -19.88 -0.12 -2.73 16 10 C -0.15 -3.59 9.62 22.63 0.22 -3.38 16 11 C 0.10 2.23 11.17 84.66 0.95 3.18 16 12 N -0.49 -11.67 10.25 -184.04 -1.89 -13.56 16 13 C 0.12 2.54 6.78 42.55 0.29 2.83 16 14 C -0.10 -1.43 10.17 71.24 0.72 -0.71 16 15 C -0.12 -2.96 9.31 22.63 0.21 -2.75 16 16 N -0.75 -29.96 4.31 -322.93 -1.39 -31.35 16 17 C -0.21 -10.26 8.23 84.03 0.69 -9.57 16 18 H 0.07 3.86 7.55 -2.91 -0.02 3.84 16 19 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 20 N -0.98 -59.19 13.97 21.65 0.30 -58.88 16 21 Si 0.94 43.24 27.74 68.60 1.90 45.14 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 25 H 0.05 1.95 5.99 -2.39 -0.01 1.93 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.41 11.84 6.28 -92.71 -0.58 11.26 16 33 H 0.15 3.35 6.54 -2.91 -0.02 3.33 16 34 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.15 3.37 7.74 -2.91 -0.02 3.35 16 39 H 0.36 14.65 5.66 -92.71 -0.52 14.12 16 40 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -65.88 333.31 1.77 -64.11 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.11 Total: 34.17 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.51 Total: 3.43 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -5.47 Total: -126.76 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.90 Total: 45.14 kcal Total: -65.88 1.77 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495076247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.773 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds