Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46786 * 2 1 4 4 N 1.46499 * 109.46954 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00084 * 270.00263 * 4 3 2 6 6 H 1.07999 * 120.00307 * 38.13058 * 5 4 3 7 7 C 1.38812 * 119.99763 * 218.13230 * 5 4 3 8 8 N 1.31616 * 120.00279 * 21.28402 * 7 5 4 9 9 Si 1.86809 * 119.99968 * 201.27932 * 7 5 4 10 10 H 1.48497 * 109.46868 * 89.99680 * 9 7 5 11 11 H 1.48495 * 109.47100 * 210.00286 * 9 7 5 12 12 H 1.48501 * 109.46633 * 330.00372 * 9 7 5 13 13 C 1.46504 * 120.00125 * 90.00029 * 4 3 2 14 14 C 1.52993 * 109.47353 * 264.50492 * 13 4 3 15 15 N 1.46494 * 109.47317 * 180.02562 * 14 13 4 16 16 C 1.34777 * 120.00198 * 180.02562 * 15 14 13 17 17 O 1.21510 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.48173 * 120.00009 * 179.97438 * 16 15 14 19 19 C 1.39308 * 119.72403 * 179.97438 * 18 16 15 20 20 C 1.38590 * 119.06012 * 179.97438 * 19 18 16 21 21 C 1.38621 * 118.48650 * 0.02562 * 20 19 18 22 22 C 1.38550 * 119.35548 * 0.24718 * 21 20 19 23 23 N 1.31526 * 120.90161 * 359.50048 * 22 21 20 24 24 H 1.08998 * 109.47267 * 299.99522 * 1 2 3 25 25 H 1.08999 * 109.47633 * 59.99410 * 1 2 3 26 26 H 1.09006 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46784 * 240.00680 * 2 1 3 28 28 H 1.08994 * 109.47181 * 119.99791 * 2 1 3 29 29 H 1.09001 * 109.47319 * 60.00161 * 3 2 1 30 30 H 1.09005 * 109.47398 * 300.00241 * 3 2 1 31 31 H 0.97008 * 120.00299 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46907 * 144.50047 * 13 4 3 33 33 H 1.09008 * 109.46613 * 24.50561 * 13 4 3 34 34 H 1.09001 * 109.47229 * 59.99416 * 14 13 4 35 35 H 1.08997 * 109.46853 * 299.99621 * 14 13 4 36 36 H 0.97006 * 120.00182 * 359.97438 * 15 14 13 37 37 H 1.08001 * 120.46859 * 0.02562 * 19 18 16 38 38 H 1.08004 * 120.75430 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.32341 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.55328 * 179.74984 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8234 0.8647 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5891 3.1901 0.4961 9 14 6.5945 1.7567 2.6443 10 1 7.5729 0.7741 2.1129 11 1 7.3094 2.9869 3.0693 12 1 5.8855 1.1687 3.8092 13 6 4.2369 1.4428 -1.2697 14 6 4.6115 0.0071 -1.6427 15 7 5.3439 0.0073 -2.9113 16 6 5.7772 -1.1544 -3.4397 17 8 5.5606 -2.2020 -2.8634 18 6 6.5176 -1.1541 -4.7231 19 6 6.9632 -2.3582 -5.2638 20 6 7.6539 -2.3420 -6.4652 21 6 7.8753 -1.1216 -7.0841 22 6 7.4083 0.0378 -6.4862 23 7 6.7514 -0.0067 -5.3477 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 6.4041 3.7087 0.5852 32 1 5.1432 2.0396 -1.1662 33 1 3.6083 1.8692 -2.0515 34 1 3.7052 -0.5897 -1.7460 35 1 5.2400 -0.4192 -0.8608 36 1 5.5166 0.8436 -3.3716 37 1 6.7724 -3.2912 -4.7542 38 1 8.0114 -3.2594 -6.9091 39 1 8.4106 -1.0745 -8.0209 40 1 7.5827 0.9908 -6.9636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567420965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 10.393873 kcal Electronic energy + Delta-G solvation = -21090.225167 eV Core-core repulsion = 17905.350288 eV Total energy + Delta-G solvation = -3184.874878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52426 -38.65547 -36.44196 -34.28076 -32.93514 -32.62781 -31.54753 -30.69907 -28.15623 -25.54431 -24.78716 -23.64807 -23.04032 -21.03518 -20.47733 -20.02938 -18.04677 -16.82213 -16.50093 -16.04481 -15.26695 -15.07073 -14.90024 -14.75031 -14.31628 -13.98972 -13.63074 -13.54938 -13.26222 -12.92243 -12.74770 -12.47732 -12.09724 -11.56901 -11.46866 -11.15166 -10.91631 -10.73634 -10.42172 -10.32639 -10.15643 -10.14197 -10.03091 -9.84792 -9.69816 -9.45726 -9.33969 -8.53020 -8.41350 -6.59489 -5.79095 -3.41153 0.58171 1.05874 2.91768 3.37007 3.44967 3.45370 3.47935 3.88692 4.16135 4.48454 4.60907 4.78815 4.82393 4.92229 5.28836 5.32733 5.51412 5.56394 5.68061 5.78033 5.81031 5.92076 6.04794 6.15697 6.24977 6.31418 6.41823 6.44706 6.55904 6.64124 6.69459 6.89718 6.99520 7.05516 7.19303 7.56257 7.63132 7.83325 8.01203 8.50261 8.55786 9.17015 9.78881 10.36997 11.19066 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.004626 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.010033 B = 6051.193417 C = 7102.872874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.135 3.865 14 C 0.097 3.903 15 N -0.696 5.696 16 C 0.559 3.441 17 O -0.542 6.542 18 C 0.088 3.912 19 C -0.116 4.116 20 C -0.084 4.084 21 C -0.158 4.158 22 C 0.097 3.903 23 N -0.457 5.457 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.408 0.592 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -6.576 -14.750 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.527 5.527 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.008 3.992 14 C -0.028 4.028 15 N -0.345 5.345 16 C 0.343 3.657 17 O -0.420 6.420 18 C -0.051 4.051 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.178 4.178 22 C -0.062 4.062 23 N -0.169 5.169 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.243 0.757 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.344 -6.367 -13.858 15.310 hybrid contribution 1.221 -0.680 -0.068 1.400 sum 2.565 -7.048 -13.926 15.817 Atomic orbital electron populations 1.21721 0.97335 1.00372 1.01016 1.22207 0.93837 1.01030 1.01510 1.20950 0.85039 0.92850 0.99009 1.43603 0.99417 1.85083 1.01804 1.19029 1.06152 1.22713 0.91353 0.92062 1.25190 1.00800 0.94602 0.97932 1.69973 1.25915 1.17057 1.39789 0.86404 0.81722 0.77529 0.81841 1.21240 1.21700 1.20129 1.21077 0.99668 0.91661 0.86822 1.22500 0.94956 1.02640 0.82738 1.46014 1.55145 1.08777 1.24579 1.17908 0.79533 0.84649 0.83636 1.90762 1.57982 1.31607 1.61629 1.21417 0.98240 0.89589 0.95846 1.22165 0.96248 0.99635 0.95654 1.21618 0.96217 0.98723 0.94393 1.22350 1.00542 0.93626 1.01306 1.22834 0.93521 0.98768 0.91099 1.67610 1.11913 1.28587 1.08797 0.93197 0.93457 0.93840 0.92993 0.92377 0.93259 0.94960 0.93496 0.88402 0.95082 0.92756 0.91439 0.75692 0.83455 0.84235 0.84396 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.70 6.26 -26.73 -0.17 -2.86 16 3 C 0.15 3.11 5.71 -4.04 -0.02 3.09 16 4 N -0.58 -14.20 2.43 -173.23 -0.42 -14.62 16 5 C -0.26 -7.11 9.42 -15.06 -0.14 -7.25 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 7 C 0.02 0.42 5.00 -17.43 -0.09 0.34 16 8 N -0.89 -25.02 11.43 55.49 0.63 -24.39 16 9 Si 0.90 21.69 29.60 -169.99 -5.03 16.66 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.14 3.09 5.50 -4.04 -0.02 3.06 16 14 C 0.10 2.06 5.97 -4.05 -0.02 2.03 16 15 N -0.70 -13.01 5.54 -61.15 -0.34 -13.35 16 16 C 0.56 10.39 7.81 -12.18 -0.10 10.29 16 17 O -0.54 -11.52 16.32 5.36 0.09 -11.43 16 18 C 0.09 1.33 6.75 -83.01 -0.56 0.77 16 19 C -0.12 -1.45 9.63 -39.05 -0.38 -1.82 16 20 C -0.08 -0.76 10.17 -39.31 -0.40 -1.16 16 21 C -0.16 -1.30 10.11 -39.33 -0.40 -1.70 16 22 C 0.10 0.99 11.18 -17.57 -0.20 0.79 16 23 N -0.46 -6.35 9.54 -9.80 -0.09 -6.45 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.98 6.65 -51.93 -0.35 0.64 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 30 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.10 2.52 5.53 -51.93 -0.29 2.23 16 33 H 0.03 0.66 7.83 -51.92 -0.41 0.25 16 34 H 0.05 1.16 6.65 -51.93 -0.35 0.81 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.41 7.03 7.80 -40.82 -0.32 6.72 16 37 H 0.15 1.79 7.64 -52.49 -0.40 1.38 16 38 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -31.30 338.74 -8.04 -39.35 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.86 Total: 5.37 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.12 Total: 3.76 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.22 Total: -58.80 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.30 -8.04 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567420965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.740 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds