Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46786 * 2 1 4 4 N 1.46499 * 109.46954 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00084 * 270.00263 * 4 3 2 6 6 H 1.07999 * 120.00307 * 38.13058 * 5 4 3 7 7 C 1.38812 * 119.99763 * 218.13230 * 5 4 3 8 8 N 1.31616 * 120.00279 * 21.28402 * 7 5 4 9 9 Si 1.86809 * 119.99968 * 201.27932 * 7 5 4 10 10 H 1.48497 * 109.46868 * 89.99680 * 9 7 5 11 11 H 1.48495 * 109.47100 * 210.00286 * 9 7 5 12 12 H 1.48501 * 109.46633 * 330.00372 * 9 7 5 13 13 C 1.46504 * 120.00125 * 90.00029 * 4 3 2 14 14 C 1.52993 * 109.47353 * 264.50492 * 13 4 3 15 15 N 1.46494 * 109.47317 * 180.02562 * 14 13 4 16 16 C 1.34777 * 120.00198 * 180.02562 * 15 14 13 17 17 O 1.21510 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.48173 * 120.00009 * 179.97438 * 16 15 14 19 19 C 1.39308 * 119.72403 * 179.97438 * 18 16 15 20 20 C 1.38590 * 119.06012 * 179.97438 * 19 18 16 21 21 C 1.38621 * 118.48650 * 0.02562 * 20 19 18 22 22 C 1.38550 * 119.35548 * 0.24718 * 21 20 19 23 23 N 1.31526 * 120.90161 * 359.50048 * 22 21 20 24 24 H 1.08998 * 109.47267 * 299.99522 * 1 2 3 25 25 H 1.08999 * 109.47633 * 59.99410 * 1 2 3 26 26 H 1.09006 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46784 * 240.00680 * 2 1 3 28 28 H 1.08994 * 109.47181 * 119.99791 * 2 1 3 29 29 H 1.09001 * 109.47319 * 60.00161 * 3 2 1 30 30 H 1.09005 * 109.47398 * 300.00241 * 3 2 1 31 31 H 0.97008 * 120.00299 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46907 * 144.50047 * 13 4 3 33 33 H 1.09008 * 109.46613 * 24.50561 * 13 4 3 34 34 H 1.09001 * 109.47229 * 59.99416 * 14 13 4 35 35 H 1.08997 * 109.46853 * 299.99621 * 14 13 4 36 36 H 0.97006 * 120.00182 * 359.97438 * 15 14 13 37 37 H 1.08001 * 120.46859 * 0.02562 * 19 18 16 38 38 H 1.08004 * 120.75430 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.32341 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.55328 * 179.74984 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8234 0.8647 2.0206 7 6 5.3561 2.1847 1.3129 8 7 5.5891 3.1901 0.4961 9 14 6.5945 1.7567 2.6443 10 1 7.5729 0.7741 2.1129 11 1 7.3094 2.9869 3.0693 12 1 5.8855 1.1687 3.8092 13 6 4.2369 1.4428 -1.2697 14 6 4.6115 0.0071 -1.6427 15 7 5.3439 0.0073 -2.9113 16 6 5.7772 -1.1544 -3.4397 17 8 5.5606 -2.2020 -2.8634 18 6 6.5176 -1.1541 -4.7231 19 6 6.9632 -2.3582 -5.2638 20 6 7.6539 -2.3420 -6.4652 21 6 7.8753 -1.1216 -7.0841 22 6 7.4083 0.0378 -6.4862 23 7 6.7514 -0.0067 -5.3477 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 6.4041 3.7087 0.5852 32 1 5.1432 2.0396 -1.1662 33 1 3.6083 1.8692 -2.0515 34 1 3.7052 -0.5897 -1.7460 35 1 5.2400 -0.4192 -0.8608 36 1 5.5166 0.8436 -3.3716 37 1 6.7724 -3.2912 -4.7542 38 1 8.0114 -3.2594 -6.9091 39 1 8.4106 -1.0745 -8.0209 40 1 7.5827 0.9908 -6.9636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567420965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -9.965494 kcal Electronic energy + Delta-G solvation = -21091.108015 eV Core-core repulsion = 17905.350288 eV Total energy + Delta-G solvation = -3185.757727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58035 -39.98409 -38.25046 -35.85950 -34.62588 -33.60224 -32.70783 -32.31242 -29.81721 -27.35710 -26.07647 -24.73056 -24.30049 -22.66671 -22.01586 -21.61224 -19.36994 -18.47271 -17.74816 -17.09391 -16.89885 -16.53056 -16.46277 -15.92882 -15.85742 -15.63634 -14.92350 -14.84707 -14.63848 -14.32129 -14.11120 -14.03320 -13.36993 -13.07660 -12.93633 -12.89975 -12.66368 -12.52519 -12.24755 -12.02972 -11.88893 -11.71682 -11.49129 -11.28753 -10.95772 -10.56917 -10.53315 -10.31324 -10.00354 -8.61248 -7.85115 -5.51781 -0.36132 0.27251 1.41748 1.46104 1.52705 1.69413 2.06592 2.48329 2.87997 3.12252 3.21741 3.70390 3.87139 3.97895 4.05780 4.10702 4.20190 4.31194 4.35245 4.46950 4.54557 4.67008 4.69912 4.78106 4.84642 4.98350 5.07489 5.12758 5.16250 5.20683 5.25573 5.34826 5.42833 5.61560 5.62779 5.65713 5.73267 6.38743 6.45683 6.82005 7.09221 7.14600 7.80447 8.33358 9.08669 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.004626 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.010033 B = 6051.193417 C = 7102.872874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.053 0.947 7 C -0.027 4.027 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.292 1.292 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.144 3.856 14 C 0.120 3.880 15 N -0.695 5.695 16 C 0.556 3.444 17 O -0.579 6.579 18 C 0.052 3.948 19 C -0.124 4.124 20 C -0.077 4.077 21 C -0.133 4.133 22 C 0.088 3.912 23 N -0.484 5.484 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.415 0.585 37 H 0.141 0.859 38 H 0.179 0.821 39 H 0.185 0.815 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -7.120 -17.222 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.071 0.929 7 C -0.225 4.225 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.219 1.219 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.017 3.983 14 C -0.007 4.007 15 N -0.345 5.345 16 C 0.342 3.658 17 O -0.460 6.460 18 C -0.085 4.085 19 C -0.145 4.145 20 C -0.103 4.103 21 C -0.152 4.152 22 C -0.072 4.072 23 N -0.197 5.197 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.251 0.749 37 H 0.159 0.841 38 H 0.196 0.804 39 H 0.202 0.798 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.892 -6.911 -16.337 17.839 hybrid contribution 1.080 -0.515 0.541 1.313 sum 2.972 -7.426 -15.796 17.706 Atomic orbital electron populations 1.21652 0.94145 1.01815 1.02030 1.22030 0.96534 0.98696 1.00260 1.21074 0.83177 0.94567 0.99174 1.43834 1.00917 1.85365 1.01547 1.19178 1.06767 1.22183 0.92078 0.92899 1.25776 1.02124 0.94673 0.99940 1.70069 1.26178 1.17847 1.41204 0.85548 0.79605 0.77033 0.79997 1.21941 1.21354 1.19309 1.20909 0.98696 0.91960 0.86777 1.21987 0.94301 1.01240 0.83123 1.45882 1.55318 1.09584 1.23730 1.18538 0.78850 0.83654 0.84735 1.90717 1.59469 1.32633 1.63151 1.20896 1.00947 0.91374 0.95269 1.22269 0.96789 0.98311 0.97117 1.22074 0.94608 1.00881 0.92692 1.22878 0.98140 0.92206 1.01991 1.23498 0.92586 1.01158 0.89986 1.67496 1.13332 1.28265 1.10563 0.92511 0.92125 0.92205 0.93693 0.94189 0.94090 0.93640 0.93711 0.91053 0.93534 0.92952 0.94952 0.74871 0.84125 0.80405 0.79781 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.19 16 2 C -0.14 -4.99 6.26 30.59 0.19 -4.80 16 3 C 0.15 6.15 5.71 86.38 0.49 6.64 16 4 N -0.60 -29.96 2.43 -701.99 -1.71 -31.66 16 5 C -0.27 -15.10 9.42 84.03 0.79 -14.31 16 6 H 0.05 2.97 7.92 -2.91 -0.02 2.95 16 7 C -0.03 -1.50 5.00 84.86 0.42 -1.07 16 8 N -0.91 -52.59 11.43 21.65 0.25 -52.35 16 9 Si 0.95 45.53 29.60 68.60 2.03 47.56 16 10 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.14 6.78 5.50 86.38 0.47 7.25 16 14 C 0.12 5.33 5.97 86.38 0.52 5.85 16 15 N -0.70 -27.20 5.54 -465.69 -2.58 -29.78 16 16 C 0.56 21.60 7.81 86.88 0.68 22.28 16 17 O -0.58 -25.92 16.32 -3.75 -0.06 -25.98 16 18 C 0.05 1.58 6.75 41.91 0.28 1.87 16 19 C -0.12 -2.97 9.63 22.61 0.22 -2.75 16 20 C -0.08 -1.11 10.17 22.45 0.23 -0.89 16 21 C -0.13 -1.56 10.11 22.44 0.23 -1.34 16 22 C 0.09 1.52 11.18 84.81 0.95 2.47 16 23 N -0.48 -13.07 9.54 -184.92 -1.76 -14.84 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.04 1.70 6.65 -2.39 -0.02 1.69 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 30 H 0.05 1.79 7.86 -2.38 -0.02 1.77 16 31 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 32 H 0.07 3.82 5.53 -2.39 -0.01 3.80 16 33 H 0.05 2.01 7.83 -2.38 -0.02 1.99 16 34 H 0.05 2.33 6.65 -2.39 -0.02 2.32 16 35 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 14.90 7.80 -92.70 -0.72 14.17 16 37 H 0.14 3.45 7.64 -2.91 -0.02 3.43 16 38 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -71.12 338.74 2.66 -68.46 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.31 Total: 20.59 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.19 Total: 18.00 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.81 Total: -128.63 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.06 Total: -25.98 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.12 2.66 -68.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567420965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds