Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47043 * 2 1 4 4 H 1.08996 * 109.47060 * 304.99576 * 3 2 1 5 5 C 1.50703 * 109.46737 * 184.99725 * 3 2 1 6 6 H 1.08000 * 119.99797 * 239.99014 * 5 3 2 7 7 C 1.37876 * 120.00114 * 60.00440 * 5 3 2 8 8 N 1.31513 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99951 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47211 * 59.99269 * 9 7 5 11 11 H 1.48496 * 109.47097 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46752 * 299.99498 * 9 7 5 13 13 N 1.46497 * 109.46960 * 64.99800 * 3 2 1 14 14 C 1.34783 * 120.00011 * 274.99713 * 13 3 2 15 15 O 1.21279 * 119.99632 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99858 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47444 * 39.99643 * 16 14 13 18 18 N 1.46901 * 109.47094 * 160.00588 * 16 14 13 19 19 C 1.53004 * 109.46912 * 280.00089 * 16 14 13 20 20 C 1.50701 * 109.47223 * 175.00603 * 19 16 14 21 21 C 1.38658 * 120.78488 * 270.29652 * 20 19 16 22 22 C 1.38203 * 119.15897 * 180.21971 * 21 20 19 23 23 N 1.31872 * 120.76276 * 359.47460 * 22 21 20 24 24 C 1.31868 * 121.73078 * 0.27879 * 23 22 21 25 25 C 1.38209 * 120.76227 * 359.97289 * 24 23 22 26 26 H 1.08995 * 109.47613 * 300.00184 * 1 2 3 27 27 H 1.08993 * 109.47104 * 60.00594 * 1 2 3 28 28 H 1.09002 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47477 * 239.99278 * 2 1 3 30 30 H 1.09007 * 109.47116 * 119.99492 * 2 1 3 31 31 H 0.96999 * 120.00041 * 180.02562 * 8 7 5 32 32 H 0.97005 * 120.00323 * 95.00477 * 13 3 2 33 33 H 1.00905 * 110.99450 * 296.04119 * 18 16 14 34 34 H 1.00896 * 111.00180 * 59.98893 * 18 16 14 35 35 H 1.08995 * 109.47547 * 55.00359 * 19 16 14 36 36 H 1.09001 * 109.47055 * 294.99758 * 19 16 14 37 37 H 1.07994 * 120.41972 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.61988 * 179.75634 * 22 21 20 39 39 H 1.07999 * 119.61884 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.41921 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3367 -2.1728 9 14 6.0050 0.8812 -1.3816 10 1 6.5975 0.1473 -0.2346 11 1 6.3979 0.2167 -2.6501 12 1 6.4995 2.2815 -1.3820 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3396 2.6319 0.4342 16 6 0.0365 3.3386 2.6543 17 1 0.8862 3.8935 3.0521 18 7 -1.0760 4.2633 2.3989 19 6 -0.4022 2.2811 3.6693 20 6 -0.6833 2.9422 4.9940 21 6 0.3211 3.0970 5.9373 22 6 0.0249 3.7041 7.1429 23 7 -1.1927 4.1426 7.3962 24 6 -2.1711 4.0169 6.5210 25 6 -1.9509 3.4158 5.2961 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0618 -2.9494 32 1 2.2718 2.1232 1.9978 33 1 -0.7920 5.0088 1.7811 34 1 -1.8765 3.7727 2.0293 35 1 0.3914 1.5441 3.7922 36 1 -1.3051 1.7864 3.3113 37 1 1.3213 2.7440 5.7339 38 1 0.8007 3.8249 7.8846 39 1 -3.1555 4.3888 6.7638 40 1 -2.7561 3.3161 4.5833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577040367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = -39.328024 kcal Electronic energy + Delta-G solvation = -21476.726357 eV Core-core repulsion = 18289.695375 eV Total energy + Delta-G solvation = -3187.030982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25579 -40.62520 -37.32797 -36.31885 -34.29629 -33.46320 -32.71953 -31.96652 -29.66732 -28.72675 -25.78700 -24.61409 -24.21952 -22.68750 -21.67473 -21.00739 -19.00494 -17.97425 -17.44589 -17.23974 -17.12035 -16.66291 -16.37472 -16.10209 -15.96654 -15.06733 -14.95433 -14.59057 -14.47904 -14.30014 -13.96517 -13.50895 -13.35150 -13.17347 -13.09361 -12.91254 -12.66441 -12.56612 -12.20845 -12.12784 -12.06321 -11.59482 -11.14515 -11.03725 -10.54569 -10.36519 -10.33414 -9.93009 -9.68714 -9.62096 -8.16713 -6.34350 0.36147 0.42585 1.44616 1.45550 1.53365 1.80078 2.35397 2.64805 3.02089 3.12760 3.46092 3.71639 3.76193 3.95790 4.09267 4.16344 4.25488 4.36795 4.39956 4.48494 4.56786 4.70551 4.75644 4.82283 4.95835 5.05332 5.05516 5.19865 5.25422 5.42904 5.55562 5.56345 5.62050 5.79020 5.89939 5.93077 6.01666 6.17185 6.39853 6.74401 6.98373 7.16342 7.33166 7.56794 8.87827 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.003962 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.190602 B = 7065.214758 C = 7630.134859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.467 3.533 15 O -0.588 6.588 16 C 0.095 3.905 17 H 0.112 0.888 18 N -0.810 5.810 19 C -0.064 4.064 20 C -0.026 4.026 21 C -0.174 4.174 22 C 0.083 3.917 23 N -0.518 5.518 24 C 0.082 3.918 25 C -0.149 4.149 26 H 0.048 0.952 27 H 0.022 0.978 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.345 0.655 34 H 0.347 0.653 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 4.359 15.584 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.349 5.349 14 C 0.252 3.748 15 O -0.470 6.470 16 C -0.021 4.021 17 H 0.130 0.870 18 N -0.338 5.338 19 C -0.102 4.102 20 C -0.035 4.035 21 C -0.194 4.194 22 C -0.073 4.073 23 N -0.228 5.228 24 C -0.074 4.074 25 C -0.169 4.169 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.170 0.830 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.870 4.788 16.338 18.359 hybrid contribution 1.413 -0.785 -2.303 2.814 sum -5.457 4.003 14.035 15.581 Atomic orbital electron populations 1.21666 0.96906 0.99068 1.00284 1.21772 0.93785 0.99182 1.01232 1.18325 0.93436 0.89182 0.81645 0.98707 1.21580 0.91645 1.38886 1.06646 0.91022 1.25745 1.03119 0.94430 0.95097 1.70038 1.37082 1.38337 1.09875 0.85477 0.79383 0.78417 0.77543 1.18854 1.21389 1.19725 1.46363 1.15827 1.55424 1.17265 1.22482 0.81882 0.78888 0.91542 1.90666 1.52452 1.61232 1.42612 1.21462 0.96329 0.93987 0.90330 0.86978 1.59249 1.06943 1.13253 1.54326 1.20511 1.03404 0.95902 0.90354 1.20070 0.93778 0.95114 0.94499 1.22310 1.01024 1.01301 0.94736 1.23075 0.93991 0.93962 0.96265 1.67657 1.01739 1.18472 1.34915 1.23053 0.98739 0.95646 0.89929 1.22129 0.97924 0.98822 0.98010 0.93277 0.95855 0.93793 0.91345 0.93957 0.92673 0.76197 0.84242 0.83951 0.88736 0.90320 0.82980 0.81048 0.81317 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.51 71.98 0.61 -4.59 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.53 16 3 C 0.28 13.55 2.24 44.25 0.10 13.65 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 5 C -0.55 -28.00 8.73 25.60 0.22 -27.78 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.86 5.29 84.65 0.45 1.30 16 8 N -0.92 -51.40 11.29 21.45 0.24 -51.16 16 9 Si 0.97 41.05 29.54 68.60 2.03 43.08 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.70 -26.09 5.02 -446.09 -2.24 -28.33 16 14 C 0.47 16.04 5.64 87.65 0.49 16.53 16 15 O -0.59 -24.93 13.39 -3.03 -0.04 -24.97 16 16 C 0.10 2.27 3.14 44.17 0.14 2.41 16 17 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 18 N -0.81 -18.34 8.41 -171.80 -1.44 -19.78 16 19 C -0.06 -1.30 5.02 29.85 0.15 -1.15 16 20 C -0.03 -0.51 4.98 -19.67 -0.10 -0.61 16 21 C -0.17 -3.11 9.82 22.36 0.22 -2.89 16 22 C 0.08 1.58 11.18 84.68 0.95 2.52 16 23 N -0.52 -11.56 10.36 -195.84 -2.03 -13.59 16 24 C 0.08 1.61 11.18 84.68 0.95 2.56 16 25 C -0.15 -2.84 9.47 22.36 0.21 -2.63 16 26 H 0.05 1.95 5.64 -2.39 -0.01 1.94 16 27 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 3.68 5.95 -2.39 -0.01 3.67 16 30 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.40 12.55 8.54 -92.70 -0.79 11.76 16 33 H 0.35 8.00 9.06 -89.69 -0.81 7.19 16 34 H 0.35 8.15 8.58 -89.70 -0.77 7.38 16 35 H 0.09 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 37 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -64.91 332.10 -0.23 -65.13 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -1.30 Total: 35.81 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.56 Total: -6.20 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -5.47 Total: -112.86 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -64.91 -0.23 -65.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577040367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.806 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds