Wall clock time and date at job start Mon Mar 30 2020 02:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46882 * 2 1 4 4 H 1.09006 * 109.47492 * 55.00438 * 3 2 1 5 5 C 1.50708 * 109.46970 * 174.99990 * 3 2 1 6 6 H 1.08000 * 119.99737 * 120.00062 * 5 3 2 7 7 C 1.37878 * 120.00054 * 299.99914 * 5 3 2 8 8 N 1.31514 * 119.99975 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47404 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47070 * 120.00402 * 9 7 5 12 12 H 1.48509 * 109.46784 * 239.99779 * 9 7 5 13 13 N 1.46497 * 109.47517 * 294.99916 * 3 2 1 14 14 C 1.34783 * 120.00011 * 84.99865 * 13 3 2 15 15 O 1.21279 * 119.99632 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99858 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47444 * 39.99643 * 16 14 13 18 18 N 1.46901 * 109.47094 * 160.00588 * 16 14 13 19 19 C 1.53004 * 109.46912 * 280.00089 * 16 14 13 20 20 C 1.50701 * 109.47223 * 175.00603 * 19 16 14 21 21 C 1.38658 * 120.78488 * 270.29652 * 20 19 16 22 22 C 1.38203 * 119.15897 * 180.21971 * 21 20 19 23 23 N 1.31872 * 120.76276 * 359.47460 * 22 21 20 24 24 C 1.31868 * 121.73078 * 0.27879 * 23 22 21 25 25 C 1.38209 * 120.76227 * 359.97289 * 24 23 22 26 26 H 1.08996 * 109.47350 * 59.99825 * 1 2 3 27 27 H 1.09004 * 109.46805 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47274 * 299.99803 * 1 2 3 29 29 H 1.08996 * 109.47087 * 240.00040 * 2 1 3 30 30 H 1.08999 * 109.46931 * 119.99904 * 2 1 3 31 31 H 0.96994 * 120.00502 * 179.97438 * 8 7 5 32 32 H 0.97005 * 120.00323 * 265.00629 * 13 3 2 33 33 H 1.00905 * 110.99450 * 296.04119 * 18 16 14 34 34 H 1.00896 * 111.00180 * 59.98893 * 18 16 14 35 35 H 1.08995 * 109.47547 * 55.00359 * 19 16 14 36 36 H 1.09001 * 109.47055 * 294.99758 * 19 16 14 37 37 H 1.07994 * 120.41972 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.61988 * 179.75634 * 22 21 20 39 39 H 1.07999 * 119.61884 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.41921 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0050 0.8801 1.3811 10 1 6.5988 1.5441 0.1931 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5191 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4341 16 6 0.0363 3.3377 -2.6548 17 1 0.3958 2.7493 -3.4989 18 7 -1.4275 3.4431 -2.7193 19 6 0.6513 4.7376 -2.7101 20 6 0.3552 5.3638 -4.0485 21 6 1.2204 5.1936 -5.1186 22 6 0.9183 5.7868 -6.3297 23 7 -0.1822 6.4984 -6.4763 24 6 -1.0301 6.6772 -5.4823 25 6 -0.7918 6.1186 -4.2408 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0618 2.9495 32 1 2.2719 2.1232 -1.9978 33 1 -1.8548 2.5295 -2.7494 34 1 -1.7855 3.9845 -1.9468 35 1 1.7302 4.6661 -2.5731 36 1 0.2245 5.3535 -1.9185 37 1 2.1209 4.6083 -5.0059 38 1 1.5890 5.6624 -7.1671 39 1 -1.9214 7.2662 -5.6404 40 1 -1.4901 6.2683 -3.4307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577040368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:25 Heat of formation + Delta-G solvation = -39.333170 kcal Electronic energy + Delta-G solvation = -21426.163707 eV Core-core repulsion = 18239.132502 eV Total energy + Delta-G solvation = -3187.031205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25171 -40.62807 -37.34046 -36.31551 -34.29319 -33.45249 -32.75429 -31.96968 -29.59558 -28.79189 -25.79867 -24.62018 -24.22334 -22.67023 -21.68692 -21.01278 -19.02982 -17.87938 -17.47372 -17.30303 -17.09989 -16.73223 -16.37311 -16.14294 -15.80171 -15.22091 -14.90053 -14.60764 -14.47757 -14.29642 -13.90161 -13.60213 -13.32045 -13.18359 -13.06818 -12.90177 -12.73312 -12.57447 -12.17202 -12.14520 -12.06339 -11.60942 -11.12761 -11.02851 -10.55973 -10.36958 -10.33715 -9.93324 -9.68692 -9.62047 -8.16792 -6.34044 0.35867 0.42268 1.43137 1.45228 1.56067 1.79952 2.35725 2.64647 3.01958 3.13071 3.46158 3.71352 3.75895 3.95389 4.09810 4.15334 4.25264 4.36570 4.39584 4.46553 4.54732 4.70390 4.73556 4.82035 4.95794 5.04041 5.05268 5.19313 5.23887 5.41515 5.55063 5.56194 5.62420 5.78045 5.89445 5.92789 6.01994 6.16632 6.40349 6.75157 6.98368 7.16011 7.33496 7.56843 8.88298 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.004135 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.950985 B = 6769.079428 C = 7674.248936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.700 5.700 14 C 0.467 3.533 15 O -0.588 6.588 16 C 0.096 3.904 17 H 0.115 0.885 18 N -0.809 5.809 19 C -0.065 4.065 20 C -0.026 4.026 21 C -0.174 4.174 22 C 0.084 3.916 23 N -0.518 5.518 24 C 0.083 3.917 25 C -0.149 4.149 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.346 0.654 34 H 0.347 0.653 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.624 8.081 -14.200 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.349 5.349 14 C 0.252 3.748 15 O -0.470 6.470 16 C -0.020 4.020 17 H 0.132 0.868 18 N -0.337 5.337 19 C -0.103 4.103 20 C -0.034 4.034 21 C -0.194 4.194 22 C -0.072 4.072 23 N -0.228 5.228 24 C -0.073 4.073 25 C -0.169 4.169 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.170 0.830 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.215 8.724 -14.880 18.020 hybrid contribution 1.253 -1.183 2.195 2.791 sum -3.962 7.541 -12.686 15.280 Atomic orbital electron populations 1.21658 0.96956 0.99040 1.00173 1.21786 0.93764 0.99364 1.01192 1.18336 0.93548 0.89069 0.81694 0.98538 1.21632 0.91555 1.38661 1.06556 0.90900 1.25748 1.03100 0.94470 0.95136 1.70049 1.36942 1.38491 1.09933 0.85370 0.79433 0.77745 0.78232 1.18277 1.21183 1.20664 1.46362 1.15724 1.55462 1.17323 1.22483 0.81945 0.78908 0.91459 1.90665 1.52447 1.61568 1.42283 1.21451 0.90972 0.96325 0.93262 0.86767 1.59245 1.02103 1.21781 1.50588 1.20513 1.01882 0.93441 0.94500 1.20062 0.94019 0.94422 0.94922 1.22306 1.01589 1.01857 0.93618 1.23076 0.93879 0.92857 0.97424 1.67659 1.04469 1.16438 1.34192 1.23052 0.98332 0.97262 0.88670 1.22127 0.97549 0.97959 0.99279 0.93564 0.93810 0.95717 0.94123 0.91261 0.92707 0.76199 0.84160 0.83997 0.88924 0.90534 0.83010 0.81001 0.81282 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.52 71.98 0.61 -4.59 16 2 C -0.12 -5.80 5.45 30.59 0.17 -5.63 16 3 C 0.28 13.50 2.24 44.25 0.10 13.60 16 4 H 0.00 -0.19 7.58 -2.38 -0.02 -0.21 16 5 C -0.55 -27.67 8.73 25.60 0.22 -27.45 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -51.34 11.29 21.45 0.24 -51.10 16 9 Si 0.97 40.97 29.54 68.60 2.03 42.99 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.70 -26.06 5.02 -446.09 -2.24 -28.30 16 14 C 0.47 16.03 5.64 87.65 0.49 16.53 16 15 O -0.59 -24.92 13.39 -3.03 -0.04 -24.96 16 16 C 0.10 2.29 3.14 44.17 0.14 2.43 16 17 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 18 N -0.81 -18.11 8.41 -171.80 -1.44 -19.56 16 19 C -0.07 -1.39 5.02 29.85 0.15 -1.24 16 20 C -0.03 -0.52 4.98 -19.67 -0.10 -0.62 16 21 C -0.17 -3.17 9.82 22.36 0.22 -2.95 16 22 C 0.08 1.60 11.18 84.68 0.95 2.55 16 23 N -0.52 -11.63 10.36 -195.84 -2.03 -13.66 16 24 C 0.08 1.64 11.18 84.68 0.95 2.59 16 25 C -0.15 -2.90 9.47 22.36 0.21 -2.69 16 26 H 0.05 1.86 5.65 -2.39 -0.01 1.85 16 27 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.02 1.15 7.85 -2.38 -0.02 1.13 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 3.74 5.95 -2.39 -0.01 3.73 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.40 12.55 8.54 -92.70 -0.79 11.75 16 33 H 0.35 7.76 9.06 -89.69 -0.81 6.94 16 34 H 0.35 8.16 8.58 -89.70 -0.77 7.39 16 35 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -64.70 332.10 -0.23 -64.93 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.30 Total: 35.87 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.56 Total: -6.22 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -5.47 Total: -112.61 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -64.70 -0.23 -64.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577040368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.593 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds