Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46790 * 2 1 4 4 H 1.09000 * 109.47055 * 304.99648 * 3 2 1 5 5 C 1.52996 * 109.47759 * 64.99873 * 3 2 1 6 6 C 1.50706 * 109.46972 * 185.00334 * 3 2 1 7 7 N 1.31792 * 119.04006 * 120.00155 * 6 3 2 8 8 C 1.32267 * 120.89085 * 180.02562 * 7 6 3 9 9 C 1.39234 * 119.01850 * 359.97438 * 8 7 6 10 10 N 1.39971 * 120.87189 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99946 * 34.91569 * 10 9 8 12 12 O 1.21289 * 119.99868 * 355.30892 * 11 10 9 13 13 C 1.50707 * 120.00336 * 175.31702 * 11 10 9 14 14 H 1.08997 * 109.46981 * 59.99322 * 13 11 10 15 15 C 1.53003 * 109.46905 * 299.99448 * 13 11 10 16 16 C 1.50699 * 109.47260 * 179.97438 * 13 11 10 17 17 H 1.08005 * 119.99915 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99629 * 180.02562 * 16 13 11 19 19 N 1.31515 * 120.00501 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99587 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47092 * 119.99828 * 20 18 16 23 23 H 1.48498 * 109.46840 * 239.99415 * 20 18 16 24 24 C 1.39238 * 118.25694 * 0.27267 * 9 8 7 25 25 N 1.31796 * 119.03447 * 300.01565 * 6 3 2 26 26 H 1.09003 * 109.47602 * 60.00122 * 1 2 3 27 27 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47449 * 300.00353 * 1 2 3 29 29 H 1.08995 * 109.47149 * 239.99606 * 2 1 3 30 30 H 1.09003 * 109.47139 * 119.99618 * 2 1 3 31 31 H 1.09000 * 109.47020 * 59.99754 * 5 3 2 32 32 H 1.08994 * 109.47686 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47258 * 300.00097 * 5 3 2 34 34 H 1.08002 * 120.49344 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00522 * 214.90498 * 10 9 8 36 36 H 1.08995 * 109.47160 * 179.97438 * 15 13 11 37 37 H 1.09004 * 109.46653 * 300.00148 * 15 13 11 38 38 H 1.09000 * 109.46740 * 59.99626 * 15 13 11 39 39 H 0.96999 * 120.00229 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.49276 * 179.70549 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1266 1.3072 6 6 3.5418 1.4443 -0.1239 7 7 4.0980 2.0500 -1.1538 8 6 5.4125 2.0736 -1.2990 9 6 6.2089 1.4471 -0.3441 10 7 7.6038 1.4488 -0.4591 11 6 8.2360 2.5207 -0.9767 12 8 7.5928 3.4480 -1.4209 13 6 9.7421 2.5669 -1.0037 14 1 10.1209 1.7295 -1.5896 15 6 10.2809 2.4746 0.4254 16 6 10.1938 3.8617 -1.6286 17 1 9.4633 4.5792 -1.9723 18 6 11.5396 4.1298 -1.7626 19 7 12.4291 3.2560 -1.3445 20 14 12.0995 5.7345 -2.5379 21 1 10.9122 6.5393 -2.9223 22 1 12.9196 6.4962 -1.5618 23 1 12.9120 5.4433 -3.7463 24 6 5.5810 0.8143 0.7255 25 7 4.2607 0.8399 0.8007 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0697 1.5877 2.1491 32 1 1.9988 3.1541 1.3074 33 1 0.5488 2.1253 1.3969 34 1 5.8615 2.5722 -2.1453 35 1 8.1157 0.6787 -0.1662 36 1 11.3701 2.5076 0.4059 37 1 9.9020 3.3121 1.0112 38 1 9.9540 1.5380 0.8770 39 1 13.3759 3.4448 -1.4384 40 1 6.1635 0.3131 1.4844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585952154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -9.242321 kcal Electronic energy + Delta-G solvation = -21039.875374 eV Core-core repulsion = 17854.149006 eV Total energy + Delta-G solvation = -3185.726368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19685 -39.19333 -36.50143 -34.57163 -33.97604 -33.51834 -31.16091 -30.25425 -28.71337 -25.46166 -25.26376 -24.63314 -23.52476 -22.27814 -20.51315 -19.76941 -17.79937 -17.24506 -16.78236 -16.06274 -15.72962 -15.07740 -14.94206 -14.61838 -14.21163 -14.17816 -13.58721 -13.40006 -13.25302 -12.76904 -12.62677 -12.29630 -11.90091 -11.76762 -11.69375 -11.14882 -11.05931 -11.02103 -10.87590 -10.79508 -10.71653 -10.66584 -10.54107 -10.35814 -10.08702 -9.21766 -9.11658 -8.82818 -8.47871 -8.14509 -6.15290 -4.19525 0.99965 1.21351 3.25520 3.28641 3.34142 3.37157 3.45829 3.88749 3.98851 4.25929 4.37907 4.66647 4.81157 4.88522 4.98014 5.10511 5.18711 5.30458 5.35719 5.40930 5.50248 5.74315 5.80485 5.85156 5.91187 5.91959 6.01651 6.18901 6.25144 6.34421 6.45686 6.64837 6.73015 6.78460 7.14982 7.28148 7.56651 7.73293 7.93265 8.16095 8.23486 8.79315 8.90236 9.46989 10.92309 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.003318 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.673319 B = 8436.911861 C = 8768.710592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.017 4.017 4 H 0.093 0.907 5 C -0.141 4.141 6 C 0.284 3.716 7 N -0.499 5.499 8 C 0.142 3.858 9 C 0.059 3.941 10 N -0.677 5.677 11 C 0.520 3.480 12 O -0.522 6.522 13 C 0.033 3.967 14 H 0.059 0.941 15 C -0.135 4.135 16 C -0.506 4.506 17 H 0.076 0.924 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.112 3.888 25 N -0.495 5.495 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.182 0.818 35 H 0.412 0.588 36 H 0.097 0.903 37 H 0.033 0.967 38 H 0.014 0.986 39 H 0.262 0.738 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.167 -8.358 4.940 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.037 4.037 4 H 0.111 0.889 5 C -0.199 4.199 6 C 0.016 3.984 7 N -0.212 5.212 8 C -0.026 4.026 9 C -0.042 4.042 10 N -0.324 5.324 11 C 0.311 3.689 12 O -0.395 6.395 13 C 0.012 3.988 14 H 0.076 0.924 15 C -0.193 4.193 16 C -0.544 4.544 17 H 0.094 0.906 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.057 4.057 25 N -0.208 5.208 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.199 0.801 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.320 -7.644 4.688 19.504 hybrid contribution 1.823 0.427 -0.266 1.891 sum -15.497 -7.217 4.422 17.658 Atomic orbital electron populations 1.21821 0.95419 1.01659 1.02019 1.21501 0.95771 0.95008 1.02684 1.19909 0.85956 0.97798 1.00083 0.88903 1.21824 1.01280 1.00345 0.96495 1.22968 0.97386 0.91062 0.86952 1.68282 1.12298 1.17350 1.23258 1.23623 0.87772 0.94062 0.97176 1.19778 0.86676 1.01409 0.96345 1.44047 1.02897 1.20865 1.64602 1.22499 0.93133 0.79348 0.73889 1.90546 1.68235 1.36478 1.44223 1.18930 0.82727 1.00713 0.96385 0.92362 1.21782 1.05582 0.96781 0.95133 1.21143 0.92131 1.02212 1.38937 0.90567 1.24943 0.96500 0.97264 0.95382 1.69862 1.01353 1.35099 1.47065 0.86370 0.78685 0.83204 0.78873 1.19480 1.20957 1.20938 1.23063 0.90657 0.97464 0.94546 1.68036 1.06278 1.18380 1.28099 0.92659 0.92694 0.92290 0.92255 0.90876 0.91568 0.92848 0.91686 0.80103 0.75160 0.88474 0.94801 0.96732 0.92817 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -1.08 5.26 -26.73 -0.14 -1.22 16 3 C -0.02 -0.20 2.72 -91.77 -0.25 -0.45 16 4 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 5 C -0.14 -1.43 8.84 37.16 0.33 -1.10 16 6 C 0.28 4.19 6.34 -157.19 -1.00 3.19 16 7 N -0.50 -8.32 10.29 -10.58 -0.11 -8.43 16 8 C 0.14 2.49 9.98 -16.99 -0.17 2.32 16 9 C 0.06 0.94 6.34 -83.40 -0.53 0.41 16 10 N -0.68 -10.91 5.22 -9.68 -0.05 -10.96 16 11 C 0.52 10.90 7.01 -10.98 -0.08 10.82 16 12 O -0.52 -12.51 12.96 5.55 0.07 -12.44 16 13 C 0.03 0.77 2.63 -92.92 -0.24 0.53 16 14 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -2.88 8.87 37.16 0.33 -2.55 16 16 C -0.51 -13.64 8.37 -34.44 -0.29 -13.93 16 17 H 0.08 2.18 6.75 -52.48 -0.35 1.82 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C 0.11 1.54 11.26 -16.99 -0.19 1.35 16 25 N -0.49 -7.09 9.88 -10.58 -0.10 -7.19 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 31 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 34 H 0.18 3.40 6.33 -52.49 -0.33 3.07 16 35 H 0.41 5.32 8.39 -40.82 -0.34 4.97 16 36 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.24 7.68 -51.93 -0.40 -0.16 16 39 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -29.90 330.94 -7.34 -37.24 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.78 Total: 4.05 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.96 Total: 0.09 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.36 Total: -50.06 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.90 -7.34 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585952154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds