Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46790 * 2 1 4 4 H 1.09000 * 109.47055 * 304.99648 * 3 2 1 5 5 C 1.52996 * 109.47759 * 64.99873 * 3 2 1 6 6 C 1.50706 * 109.46972 * 185.00334 * 3 2 1 7 7 N 1.31792 * 119.04006 * 120.00155 * 6 3 2 8 8 C 1.32267 * 120.89085 * 180.02562 * 7 6 3 9 9 C 1.39234 * 119.01850 * 359.97438 * 8 7 6 10 10 N 1.39971 * 120.87189 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99946 * 34.91569 * 10 9 8 12 12 O 1.21289 * 119.99868 * 355.30892 * 11 10 9 13 13 C 1.50707 * 120.00336 * 175.31702 * 11 10 9 14 14 H 1.08997 * 109.46981 * 59.99322 * 13 11 10 15 15 C 1.53003 * 109.46905 * 299.99448 * 13 11 10 16 16 C 1.50699 * 109.47260 * 179.97438 * 13 11 10 17 17 H 1.08005 * 119.99915 * 359.97438 * 16 13 11 18 18 C 1.37876 * 119.99629 * 180.02562 * 16 13 11 19 19 N 1.31515 * 120.00501 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99587 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47058 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47092 * 119.99828 * 20 18 16 23 23 H 1.48498 * 109.46840 * 239.99415 * 20 18 16 24 24 C 1.39238 * 118.25694 * 0.27267 * 9 8 7 25 25 N 1.31796 * 119.03447 * 300.01565 * 6 3 2 26 26 H 1.09003 * 109.47602 * 60.00122 * 1 2 3 27 27 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47449 * 300.00353 * 1 2 3 29 29 H 1.08995 * 109.47149 * 239.99606 * 2 1 3 30 30 H 1.09003 * 109.47139 * 119.99618 * 2 1 3 31 31 H 1.09000 * 109.47020 * 59.99754 * 5 3 2 32 32 H 1.08994 * 109.47686 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47258 * 300.00097 * 5 3 2 34 34 H 1.08002 * 120.49344 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00522 * 214.90498 * 10 9 8 36 36 H 1.08995 * 109.47160 * 179.97438 * 15 13 11 37 37 H 1.09004 * 109.46653 * 300.00148 * 15 13 11 38 38 H 1.09000 * 109.46740 * 59.99626 * 15 13 11 39 39 H 0.96999 * 120.00229 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.49276 * 179.70549 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1266 1.3072 6 6 3.5418 1.4443 -0.1239 7 7 4.0980 2.0500 -1.1538 8 6 5.4125 2.0736 -1.2990 9 6 6.2089 1.4471 -0.3441 10 7 7.6038 1.4488 -0.4591 11 6 8.2360 2.5207 -0.9767 12 8 7.5928 3.4480 -1.4209 13 6 9.7421 2.5669 -1.0037 14 1 10.1209 1.7295 -1.5896 15 6 10.2809 2.4746 0.4254 16 6 10.1938 3.8617 -1.6286 17 1 9.4633 4.5792 -1.9723 18 6 11.5396 4.1298 -1.7626 19 7 12.4291 3.2560 -1.3445 20 14 12.0995 5.7345 -2.5379 21 1 10.9122 6.5393 -2.9223 22 1 12.9196 6.4962 -1.5618 23 1 12.9120 5.4433 -3.7463 24 6 5.5810 0.8143 0.7255 25 7 4.2607 0.8399 0.8007 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0697 1.5877 2.1491 32 1 1.9988 3.1541 1.3074 33 1 0.5488 2.1253 1.3969 34 1 5.8615 2.5722 -2.1453 35 1 8.1157 0.6787 -0.1662 36 1 11.3701 2.5076 0.4059 37 1 9.9020 3.3121 1.0112 38 1 9.9540 1.5380 0.8770 39 1 13.3759 3.4448 -1.4384 40 1 6.1635 0.3131 1.4844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585952154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -27.756668 kcal Electronic energy + Delta-G solvation = -21040.678216 eV Core-core repulsion = 17854.149006 eV Total energy + Delta-G solvation = -3186.529210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.44594 -40.73080 -37.50784 -35.93433 -35.87387 -34.74765 -32.83570 -31.43416 -29.77866 -27.24217 -26.49594 -25.81871 -24.82831 -23.65180 -21.67372 -21.12191 -19.21842 -18.64607 -18.15808 -17.68245 -17.32358 -16.57018 -16.19985 -15.77506 -15.73802 -15.24377 -15.02460 -14.66843 -14.49763 -14.31228 -13.67427 -13.44901 -13.08143 -12.99056 -12.87970 -12.70864 -12.62046 -12.52289 -12.30307 -12.09622 -12.07109 -11.92399 -11.87731 -11.62623 -11.48475 -11.07020 -10.75401 -10.49883 -10.21284 -9.45799 -8.18648 -6.28648 -0.22891 -0.01426 1.38318 1.41645 1.53562 1.68090 2.00172 2.43687 2.68330 2.91569 3.11702 3.12848 3.46134 3.80868 3.97037 4.01727 4.09673 4.25365 4.50774 4.57595 4.64228 4.72089 4.74507 4.78585 4.90492 4.95930 4.99210 5.06840 5.13212 5.17928 5.22157 5.42976 5.45801 5.51244 5.52254 5.71926 5.86922 5.93642 6.15314 6.47346 6.79690 7.02859 7.21153 7.40950 8.87196 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.003318 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.673319 B = 8436.911861 C = 8768.710592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.020 4.020 4 H 0.092 0.908 5 C -0.136 4.136 6 C 0.284 3.716 7 N -0.520 5.520 8 C 0.125 3.875 9 C 0.043 3.957 10 N -0.654 5.654 11 C 0.525 3.475 12 O -0.560 6.560 13 C 0.030 3.970 14 H 0.053 0.947 15 C -0.123 4.123 16 C -0.531 4.531 17 H 0.050 0.950 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.952 3.048 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.134 3.866 25 N -0.495 5.495 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.430 0.570 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.059 0.941 39 H 0.266 0.734 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.239 -9.686 6.472 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.040 4.040 4 H 0.110 0.890 5 C -0.193 4.193 6 C 0.016 3.984 7 N -0.234 5.234 8 C -0.043 4.043 9 C -0.058 4.058 10 N -0.302 5.302 11 C 0.316 3.684 12 O -0.437 6.437 13 C 0.009 3.991 14 H 0.071 0.929 15 C -0.181 4.181 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.176 4.176 19 N -0.547 5.547 20 Si 0.778 3.222 21 H -0.206 1.206 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.036 4.036 25 N -0.208 5.208 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.176 0.824 35 H 0.270 0.730 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.398 -9.018 6.233 21.416 hybrid contribution 2.064 0.784 -0.724 2.324 sum -16.334 -8.234 5.509 19.104 Atomic orbital electron populations 1.21800 0.93480 1.02572 1.02668 1.21451 0.97373 0.93396 1.02083 1.20105 0.83828 0.99250 1.00863 0.89011 1.21798 1.02945 0.99197 0.95401 1.23690 0.98977 0.89651 0.86085 1.68296 1.11988 1.18572 1.24500 1.23398 0.88609 0.94845 0.97446 1.19776 0.86001 1.02743 0.97239 1.43516 1.03251 1.20052 1.63400 1.21992 0.92360 0.80007 0.74039 1.90540 1.68650 1.38329 1.46135 1.18832 0.84468 0.98679 0.97120 0.92887 1.21608 1.03785 0.98724 0.94015 1.21295 0.92098 1.03582 1.39929 0.93207 1.25522 0.96533 0.99790 0.95779 1.69929 1.01544 1.36001 1.47248 0.85592 0.77883 0.80168 0.78544 1.20558 1.20056 1.20033 1.23684 0.90600 0.95357 0.93926 1.68199 1.06455 1.18384 1.27763 0.92428 0.91694 0.91226 0.93303 0.90992 0.91773 0.94145 0.89087 0.82435 0.73018 0.90851 0.95844 0.92203 0.92505 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.14 16 2 C -0.10 -1.83 5.26 30.59 0.16 -1.66 16 3 C -0.02 -0.43 2.72 -11.54 -0.03 -0.46 16 4 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 5 C -0.14 -2.46 8.84 71.98 0.64 -1.83 16 6 C 0.28 8.05 6.34 138.75 0.88 8.93 16 7 N -0.52 -17.46 10.29 -187.38 -1.93 -19.39 16 8 C 0.12 4.43 9.98 84.87 0.85 5.28 16 9 C 0.04 1.30 6.34 38.32 0.24 1.55 16 10 N -0.65 -20.25 5.22 -302.91 -1.58 -21.83 16 11 C 0.52 22.17 7.01 87.66 0.61 22.79 16 12 O -0.56 -27.84 12.96 -3.06 -0.04 -27.88 16 13 C 0.03 1.40 2.63 -12.28 -0.03 1.37 16 14 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.12 -5.15 8.87 71.98 0.64 -4.51 16 16 C -0.53 -29.32 8.37 25.60 0.21 -29.10 16 17 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 18 C 0.02 1.26 5.30 84.65 0.45 1.71 16 19 N -0.91 -48.91 11.32 21.45 0.24 -48.67 16 20 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.13 3.31 11.26 84.87 0.96 4.27 16 25 N -0.50 -13.08 9.88 -187.38 -1.85 -14.93 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.07 0.72 6.57 -2.39 -0.02 0.71 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.06 1.20 8.01 -2.39 -0.02 1.18 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.17 6.56 -2.39 -0.02 1.16 16 34 H 0.16 6.31 6.33 -2.91 -0.02 6.29 16 35 H 0.43 9.97 8.39 -92.71 -0.78 9.19 16 36 H 0.07 3.45 6.07 -2.39 -0.01 3.44 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.90 7.68 -2.39 -0.02 1.88 16 39 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 40 H 0.21 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -65.98 330.94 3.41 -62.57 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.27 Total: 17.14 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.27 Total: 7.19 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -5.12 Total: -104.83 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.04 Total: -27.88 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.98 3.41 -62.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585952154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.813 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds