Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 N 1.46496 * 109.47033 * 120.00472 * 2 1 3 5 5 C 1.35402 * 126.43927 * 300.01953 * 4 2 1 6 6 C 1.35562 * 107.16467 * 179.97438 * 5 4 2 7 7 N 1.33104 * 108.34719 * 359.73840 * 6 5 4 8 8 C 1.31618 * 109.09216 * 0.43122 * 7 6 5 9 9 C 1.47407 * 125.86015 * 179.82856 * 8 7 6 10 10 O 1.21600 * 119.99700 * 175.28786 * 9 8 7 11 11 N 1.34780 * 120.00224 * 355.28765 * 9 8 7 12 12 C 1.46502 * 119.99988 * 184.56377 * 11 9 8 13 13 C 1.53000 * 109.47029 * 175.21685 * 12 11 9 14 14 C 1.50700 * 115.54754 * 65.28657 * 13 12 11 15 15 H 1.07999 * 120.00710 * 270.75367 * 14 13 12 16 16 C 1.37879 * 119.99826 * 90.76010 * 14 13 12 17 17 N 1.31515 * 120.00506 * 181.64198 * 16 14 13 18 18 Si 1.86807 * 119.99878 * 1.63837 * 16 14 13 19 19 H 1.48497 * 109.47070 * 93.03721 * 18 16 14 20 20 H 1.48498 * 109.47254 * 213.03895 * 18 16 14 21 21 H 1.48500 * 109.46929 * 333.03823 * 18 16 14 22 22 C 1.52994 * 117.49845 * 279.62384 * 13 12 11 23 23 C 1.52995 * 117.50054 * 210.95988 * 13 12 11 24 24 H 1.09000 * 109.46963 * 300.00060 * 1 2 3 25 25 H 1.09002 * 109.47042 * 59.99336 * 1 2 3 26 26 H 1.08996 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46719 * 240.00420 * 2 1 3 28 28 H 1.09002 * 109.46796 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47087 * 299.99999 * 3 2 1 30 30 H 1.08998 * 109.47013 * 60.00600 * 3 2 1 31 31 H 1.08006 * 126.41887 * 0.02562 * 5 4 2 32 32 H 1.07998 * 125.82527 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99691 * 4.56794 * 11 9 8 34 34 H 1.08997 * 109.47147 * 295.21629 * 12 11 9 35 35 H 1.09003 * 109.46799 * 55.21819 * 12 11 9 36 36 H 0.96995 * 120.00201 * 179.97438 * 17 16 14 37 37 H 1.09008 * 117.50266 * 359.97438 * 22 13 12 38 38 H 1.09001 * 117.50182 * 145.02159 * 22 13 12 39 39 H 1.08997 * 117.50038 * 214.97863 * 23 13 12 40 40 H 1.09002 * 117.49468 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7726 -0.3439 2.4817 6 6 2.4097 -1.2458 3.2681 7 7 3.0253 -2.1261 2.4820 8 6 2.8070 -1.8065 1.2241 9 6 3.3199 -2.5312 0.0474 10 8 2.9818 -2.1923 -1.0704 11 7 4.1637 -3.5695 0.2105 12 6 4.7519 -4.2261 -0.9596 13 6 5.7555 -5.2852 -0.4993 14 6 5.1706 -6.4486 0.2593 15 1 5.0702 -6.3974 1.3334 16 6 4.7637 -7.5786 -0.4179 17 7 4.2236 -8.5810 0.2402 18 14 4.9796 -7.6858 -2.2704 19 1 6.2731 -8.3460 -2.5805 20 1 3.8672 -8.4781 -2.8534 21 1 4.9703 -6.3185 -2.8497 22 6 7.1509 -4.8070 -0.0932 23 6 6.9539 -5.5653 -1.4083 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.1794 0.4937 2.8177 32 1 2.4131 -1.2519 4.3480 33 1 4.3813 -3.8820 1.1026 34 1 3.9640 -4.7017 -1.5437 35 1 5.2624 -3.4845 -1.5740 36 1 3.9370 -9.3758 -0.2363 37 1 7.3541 -3.7378 -0.1544 38 1 7.6461 -5.3341 0.7223 39 1 7.3195 -6.5909 -1.4573 40 1 7.0270 -4.9953 -2.3345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634428213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 46.873331 kcal Electronic energy + Delta-G solvation = -21669.756885 eV Core-core repulsion = 18486.463875 eV Total energy + Delta-G solvation = -3183.293010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23275 -38.95719 -37.05299 -36.18639 -33.51826 -32.09436 -30.91112 -29.87107 -27.59061 -26.80138 -25.32693 -23.26436 -22.42062 -21.74701 -20.62135 -19.72309 -19.03683 -17.54574 -16.41099 -15.99613 -15.73828 -15.27508 -14.95570 -14.76808 -14.29359 -14.02666 -13.92046 -13.68818 -13.24653 -13.03132 -12.74271 -12.59259 -12.45007 -12.43564 -12.06956 -11.68370 -11.41765 -11.14587 -10.89406 -10.46311 -10.17769 -10.07601 -9.78826 -9.74804 -9.52993 -9.17065 -8.69540 -8.57080 -8.55099 -8.25867 -6.12206 -4.17039 1.55058 2.52360 2.77623 3.29075 3.40143 3.44524 3.64194 3.70839 4.41182 4.41717 4.57250 4.68039 4.77475 4.95869 5.02827 5.16067 5.19683 5.25046 5.38079 5.39213 5.50738 5.62268 5.66926 5.77177 5.85631 6.02801 6.06446 6.18919 6.30800 6.43653 6.47337 6.67663 6.70699 6.94799 7.00551 7.03470 7.09496 7.69444 7.83726 8.17937 8.45007 8.58706 8.89880 9.50133 10.99115 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.004597 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.697549 B = 6089.423237 C = 6232.222598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.103 3.897 3 C -0.158 4.158 4 N -0.409 5.409 5 C -0.037 4.037 6 C -0.030 4.030 7 N -0.442 5.442 8 C 0.150 3.850 9 C 0.597 3.403 10 O -0.560 6.560 11 N -0.671 5.671 12 C 0.158 3.842 13 C -0.017 4.017 14 C -0.491 4.491 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.880 3.120 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.257 1.257 22 C -0.177 4.177 23 C -0.192 4.192 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.418 0.582 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 18.807 0.959 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 C -0.216 4.216 4 N -0.090 5.090 5 C -0.175 4.175 6 C -0.183 4.183 7 N -0.163 5.163 8 C -0.110 4.110 9 C 0.381 3.619 10 O -0.440 6.440 11 N -0.320 5.320 12 C 0.034 3.966 13 C -0.018 4.018 14 C -0.528 4.528 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.530 5.530 18 Si 0.708 3.292 19 H -0.206 1.206 20 H -0.222 1.222 21 H -0.181 1.181 22 C -0.215 4.215 23 C -0.229 4.229 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.192 0.808 33 H 0.255 0.745 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.668 18.206 0.199 18.796 hybrid contribution -0.412 0.351 -0.641 0.839 sum -5.080 18.557 -0.442 19.245 Atomic orbital electron populations 1.22131 0.93206 1.03338 1.02909 1.22062 0.95624 0.94273 0.87913 1.22138 1.02239 0.94225 1.02978 1.45383 1.35529 1.21079 1.07037 1.22720 1.07090 1.04236 0.83460 1.22400 1.01680 0.94276 0.99952 1.70284 1.21118 1.25647 0.99215 1.22829 1.02127 0.91933 0.94136 1.16507 0.79482 0.80648 0.85279 1.90669 1.60343 1.68450 1.24512 1.45615 1.43731 1.30093 1.12530 1.21231 0.96207 0.93220 0.85902 1.19612 0.85983 0.96668 0.99518 1.20215 1.41190 0.96554 0.94839 0.90118 1.24995 0.93808 0.95301 0.98272 1.69892 1.40522 1.06331 1.36276 0.86842 0.77280 0.78890 0.86141 1.20559 1.22220 1.18088 1.22886 1.02700 0.97809 0.98082 1.22939 1.05725 1.00782 0.93483 0.92071 0.90381 0.91587 0.84585 0.91762 0.90368 0.92042 0.80660 0.80802 0.74481 0.91522 0.93213 0.92508 0.90881 0.89241 0.89151 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.25 37.16 0.34 -1.10 16 2 C 0.10 1.18 3.50 -67.93 -0.24 0.94 16 3 C -0.16 -1.36 9.25 37.16 0.34 -1.02 16 4 N -0.41 -5.60 2.62 -107.51 -0.28 -5.88 16 5 C -0.04 -0.42 10.53 -16.93 -0.18 -0.60 16 6 C -0.03 -0.39 11.85 -17.96 -0.21 -0.61 16 7 N -0.44 -7.56 10.90 -11.26 -0.12 -7.69 16 8 C 0.15 2.58 7.78 -154.52 -1.20 1.38 16 9 C 0.60 11.58 7.80 -12.53 -0.10 11.48 16 10 O -0.56 -11.41 14.38 5.28 0.08 -11.33 16 11 N -0.67 -13.54 5.48 -61.39 -0.34 -13.88 16 12 C 0.16 3.35 5.24 -4.04 -0.02 3.33 16 13 C -0.02 -0.37 0.85 -155.67 -0.13 -0.50 16 14 C -0.49 -13.16 9.22 -34.44 -0.32 -13.47 16 15 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 18 Si 0.88 21.44 24.74 -169.99 -4.21 17.23 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -5.93 6.00 56.52 0.34 -5.59 16 22 C -0.18 -3.49 9.96 -26.69 -0.27 -3.75 16 23 C -0.19 -3.95 7.19 -26.69 -0.19 -4.14 16 24 H 0.06 0.47 7.95 -51.93 -0.41 0.05 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.14 1.91 5.36 -51.93 -0.28 1.63 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 31 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.42 8.52 8.03 -40.82 -0.33 8.20 16 34 H 0.07 1.53 7.57 -51.93 -0.39 1.14 16 35 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 38 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 39 H 0.09 1.95 6.67 -51.93 -0.35 1.60 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -31.39 331.29 -7.39 -38.78 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.02 Total: 9.72 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.27 Total: -5.95 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.03 Total: -53.45 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.21 Total: 17.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.39 -7.39 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634428213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.656 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds