Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 H 1.08995 * 109.47436 * 55.00404 * 3 2 1 5 5 C 1.53001 * 109.46953 * 175.00212 * 3 2 1 6 6 N 1.46500 * 109.47275 * 175.00383 * 5 3 2 7 7 C 1.34777 * 120.00143 * 180.02562 * 6 5 3 8 8 O 1.21511 * 119.99981 * 359.97438 * 7 6 5 9 9 C 1.48168 * 119.99799 * 179.97438 * 7 6 5 10 10 N 1.32742 * 119.72382 * 353.94008 * 9 7 6 11 11 C 1.31499 * 121.64195 * 179.71130 * 10 9 7 12 12 C 1.38606 * 120.89976 * 0.56152 * 11 10 9 13 13 C 1.38579 * 119.34977 * 359.72671 * 12 11 10 14 14 C 1.38637 * 118.49353 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.47083 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.47321 * 294.99803 * 3 2 1 17 17 C 1.36939 * 119.99844 * 84.72419 * 16 3 2 18 18 H 1.08005 * 119.99976 * 0.27847 * 17 16 3 19 19 C 1.38811 * 120.00096 * 180.27747 * 17 16 3 20 20 N 1.31621 * 119.99806 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99953 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47411 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47145 * 119.99941 * 21 19 17 24 24 H 1.48497 * 109.46986 * 239.99893 * 21 19 17 25 25 H 1.08998 * 109.46861 * 300.00320 * 1 2 3 26 26 H 1.09000 * 109.46958 * 59.99707 * 1 2 3 27 27 H 1.08995 * 109.47502 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46861 * 239.99680 * 2 1 3 29 29 H 1.09000 * 109.46958 * 120.00293 * 2 1 3 30 30 H 1.09004 * 109.46777 * 295.00019 * 5 3 2 31 31 H 1.08997 * 109.47378 * 54.99891 * 5 3 2 32 32 H 0.97003 * 119.99446 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.54896 * 180.30712 * 11 10 9 34 34 H 1.08000 * 120.32590 * 179.74364 * 12 11 10 35 35 H 1.07999 * 120.75576 * 179.97438 * 13 12 11 36 36 H 1.08994 * 109.46977 * 263.25424 * 15 14 13 37 37 H 1.08999 * 109.47467 * 23.26110 * 15 14 13 38 38 H 1.09004 * 109.46646 * 143.25629 * 15 14 13 39 39 H 0.97001 * 120.00289 * 265.00215 * 16 3 2 40 40 H 0.96994 * 119.99787 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3858 3.0628 0.0858 8 8 6.1650 2.1464 0.2575 9 6 5.8898 4.4509 -0.0358 10 7 5.0496 5.4315 -0.3430 11 6 5.4549 6.6775 -0.4550 12 6 6.7865 7.0125 -0.2662 13 6 7.6987 6.0185 0.0504 14 6 7.2419 4.7148 0.1682 15 6 8.1951 3.5992 0.5114 16 7 1.6525 2.0975 -1.2518 17 6 0.4136 2.6686 -1.3708 18 1 -0.2762 2.6400 -0.5402 19 6 0.0442 3.2842 -2.5588 20 7 0.8850 3.3194 -3.5708 21 14 -1.6456 4.0638 -2.7208 22 1 -2.3947 3.8903 -1.4503 23 1 -1.4965 5.5119 -3.0143 24 1 -2.3890 3.4085 -3.8267 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8499 1.0376 1.0960 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5482 -0.1314 33 1 4.7412 7.4496 -0.7016 34 1 7.1100 8.0382 -0.3645 35 1 8.7417 6.2539 0.2021 36 1 8.5130 3.0987 -0.4032 37 1 9.0659 4.0096 1.0226 38 1 7.6957 2.8823 1.1632 39 1 2.2720 2.1232 -1.9978 40 1 0.6268 3.7493 -4.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714062878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = -17.379141 kcal Electronic energy + Delta-G solvation = -21441.649729 eV Core-core repulsion = 18255.570522 eV Total energy + Delta-G solvation = -3186.079207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71883 -39.99739 -38.26805 -35.50743 -34.44812 -34.00309 -32.97436 -31.49100 -29.69314 -28.20522 -26.02799 -25.20116 -23.93716 -22.99800 -21.73107 -21.37352 -19.41590 -18.77049 -17.78616 -17.05133 -16.63120 -16.50983 -16.34334 -15.80352 -15.77829 -15.07267 -14.85573 -14.63574 -14.43892 -14.09378 -13.98785 -13.76372 -13.63571 -13.22212 -12.98543 -12.89720 -12.80645 -12.75644 -12.35062 -12.06191 -11.85223 -11.62353 -11.32848 -11.06328 -10.89410 -10.75941 -10.33944 -10.18555 -9.80664 -8.96524 -7.86289 -5.13504 -0.31146 0.27577 1.49288 1.50342 1.59028 1.74631 2.20068 2.60522 2.87307 3.23831 3.47877 3.79009 3.87330 3.90294 3.95312 3.99651 4.06925 4.38024 4.47503 4.51802 4.56754 4.58832 4.72486 4.80527 4.82254 4.87225 5.09121 5.10522 5.12865 5.17813 5.21806 5.34498 5.50276 5.58729 5.61624 5.72629 5.73655 6.33565 6.48249 6.87684 7.18135 7.40983 8.12743 8.37592 9.37244 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.005146 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.072758 B = 5439.608339 C = 6810.935663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.055 0.945 5 C 0.120 3.880 6 N -0.696 5.696 7 C 0.558 3.442 8 O -0.561 6.561 9 C 0.040 3.960 10 N -0.483 5.483 11 C 0.074 3.926 12 C -0.129 4.129 13 C -0.085 4.085 14 C -0.085 4.085 15 C -0.110 4.110 16 N -0.727 5.727 17 C -0.214 4.214 18 H 0.080 0.920 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.299 1.299 24 H -0.300 1.300 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.413 0.587 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.371 0.629 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.212 5.112 10.373 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.055 3.945 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.346 5.346 7 C 0.344 3.656 8 O -0.441 6.441 9 C -0.097 4.097 10 N -0.194 5.194 11 C -0.087 4.087 12 C -0.148 4.148 13 C -0.110 4.110 14 C -0.089 4.089 15 C -0.166 4.166 16 N -0.368 5.368 17 C -0.346 4.346 18 H 0.098 0.902 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.226 1.226 24 H -0.228 1.228 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.196 0.804 34 H 0.200 0.800 35 H 0.197 0.803 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.202 0.798 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.649 4.251 10.448 16.947 hybrid contribution -0.493 0.861 -0.949 1.373 sum 12.156 5.112 9.499 16.252 Atomic orbital electron populations 1.21698 0.95907 1.00650 1.01773 1.21974 0.96699 0.96991 1.01165 1.20729 0.90836 0.93511 0.89436 0.92661 1.21674 0.94588 0.82374 1.01759 1.45932 1.07217 1.10966 1.70468 1.18300 0.82583 0.87858 0.76841 1.90660 1.56002 1.45715 1.51759 1.20971 0.91922 0.92964 1.03839 1.67529 1.39431 1.02064 1.10417 1.23331 0.96623 0.92266 0.96431 1.22811 0.93157 1.02639 0.96231 1.21991 1.02378 0.90353 0.96303 1.21202 0.93490 0.97926 0.96245 1.20966 0.97384 0.95694 1.02585 1.42571 1.15661 1.66271 1.12274 1.19542 0.92185 1.25543 0.97359 0.90193 1.25399 1.01120 1.03503 0.96629 1.69834 1.36773 1.51253 1.04236 0.85243 0.80753 0.77380 0.77457 1.18959 1.22627 1.22824 0.93259 0.93319 0.92674 0.93504 0.90436 0.89669 0.92740 0.74973 0.80438 0.80023 0.80338 0.91213 0.89093 0.90591 0.79755 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.17 71.98 0.66 -4.29 16 2 C -0.13 -4.30 5.61 30.59 0.17 -4.13 16 3 C 0.16 6.20 2.59 44.99 0.12 6.31 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 4.26 5.23 86.38 0.45 4.71 16 6 N -0.70 -26.41 5.38 -465.66 -2.50 -28.92 16 7 C 0.56 20.83 7.75 86.88 0.67 21.50 16 8 O -0.56 -21.75 13.31 -3.75 -0.05 -21.80 16 9 C 0.04 1.32 6.75 41.90 0.28 1.60 16 10 N -0.48 -16.04 9.56 -184.91 -1.77 -17.81 16 11 C 0.07 1.78 11.18 84.83 0.95 2.73 16 12 C -0.13 -2.15 10.11 22.44 0.23 -1.92 16 13 C -0.08 -1.50 9.83 22.45 0.22 -1.28 16 14 C -0.09 -2.20 5.93 -19.52 -0.12 -2.32 16 15 C -0.11 -2.55 8.74 71.23 0.62 -1.93 16 16 N -0.73 -34.91 4.51 -322.93 -1.46 -36.37 16 17 C -0.21 -11.25 7.74 84.03 0.65 -10.60 16 18 H 0.08 4.03 7.31 -2.91 -0.02 4.01 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 21 Si 0.96 45.79 29.55 68.60 2.03 47.82 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 2.05 5.97 -2.39 -0.01 2.03 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.41 16.97 7.48 -92.71 -0.69 16.27 16 33 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 38 H 0.08 2.15 5.86 -2.38 -0.01 2.13 16 39 H 0.37 19.95 7.80 -92.71 -0.72 19.23 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.48 332.86 1.55 -66.93 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.36 Total: 42.24 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.38 Total: 6.68 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -5.44 Total: -141.87 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -68.48 1.55 -66.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714062878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds